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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908572_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908572_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908572_v1/ public [CDOM] - Chromophoric dissolved organic matter (CDOM) from two microcosm incubation experiments conducted under three light treatments using water originating from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022 (Bacteria as Biosensors of Carbon and Energy Flow in Marine Ecosystems: Quantitative Links Between Substrates, Transcripts, and Metabolism) Chromophoric dissolved organic matter (CDOM) was collected for two microcosm incubation experiments. Sample water originated from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022. The microcosms were 60 liters, conducted in biological duplicates under three light treatment incubations: 12-hour light-dark cycle of photosynthetically active radiation (PAR), 12-hour light-dark cycle of UV-B radiation, or darkness. Samples were collected from the microcosms in duplicate every few days for over one month to examine how light and the resulting microbial activity altered the dissolved organic carbon (DOC) pool over time. Absorbance spectra of 0.2 micron filtered estuarine water was measured from 190 - 1100 nanometers (nm) on a Genesys 10S UV-Vis spectrophotometer for the calculation of absorbance coefficients, spectral slopes, and slope ratio which describe the organic matter complexity as it develops throughout the incubations.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Name (unitless)\nStart_date (unitless)\nTreatment (unitless)\nIncubation_day (days)\nTank_ID (unitless)\nnm (nanometers (nm))\nabsp_coef (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908572_v1/index.htmlTable https://www.bco-dmo.org/dataset/908572 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908572_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908572_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_908572_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_706167 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_706167/ public [Deep convection simulation using MITgcm] - Deep convection simulation from the MITgcm (MIT General Circulation Model) (IVOMLS project) (Interannual variability of oxygen and macro-nutrients in the Labrador Sea) This dataset includes deep convection simulation output from the MITgcm (MIT\nGeneral Circulation Model). The data include profiles under different\nsituations in an idealized domain. \\u00a0The experiment was based\non\\u00a0winter Labrador Sea\\u00a0conditions.\n \nModel output\\u00a0is\\u00a0available to download as MATLAB .mat files by\nclicking the \\Get Data\\ link. \\u00a0Each file includes the output of one run\ncovering 90 days.  \n * Contents of .mat files described in\n\\u00a0[mat_file_variables.csv](\\\\http://dmoserv3.whoi.edu/data_docs/IVOMLS/MITgcm/mat_file_variables.csv\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nexperiment_name (unitless)\nexperiment_type (unitless)\ncomment (unitless)\nfilesize (unitless)\nfile_download_link (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_706167/index.htmlTable https://www.bco-dmo.org/dataset/706167 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_706167.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_706167&showErrors=false&email= BCO-DMO bcodmo_dataset_706167
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908475_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908475_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908475_v1/ public [Dissolved Organic Carbon] - Bulk dissolved organic carbon (DOC) from two microcosm incubation experiments conducted under three light treatments using water originating from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022 (Bacteria as Biosensors of Carbon and Energy Flow in Marine Ecosystems: Quantitative Links Between Substrates, Transcripts, and Metabolism) Bulk dissolved organic carbon (DOC) was collected from two microcosm incubation experiments. Sample water originated from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022. The microcosms were 60 liters, conducted in biological duplicates under three light treatment incubations: 12-hour light-dark cycle of photosynthetically active radiation (PAR), 12-hour light-dark cycle of UV-B radiation, or darkness. Samples were collected from the microcosms in duplicate every few days for over one month to examine how light and the resulting microbial activity altered the DOC pool over time.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Name (unitless)\nStart_date (unitless)\nTreatment (unitless)\nIncubation_day (days)\nTank_ID (unitless)\nDOC_uM (micromoles per liter (umol L-1))\nDOC_Technical_sd (micromoles per liter (umol L-1))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908475_v1/index.htmlTable https://www.bco-dmo.org/dataset/908475 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908475_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908475_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_908475_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_779387.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_779387 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_779387.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_779387/ public [Experiment Metrics] - Experiment details for invertebrate larvae electrophysiology (Vision-mediated influence of low oxygen on the physiology and ecology  of marine larvae) Experiment Details for invertebrate larvae electrophysiology\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nExperiment_Name (unitless)\nNormoxia_Time (minute (min))\nO2_Decay (minute (min))\nNormoxia_O2 (micromole per liter (umol/L))\nLow_O2 (micromole per liter (umol/L))\nO2_Change (micromole per liter (umol/L))\nO2_Change_Time (micromole per liter per minute (umol/l per min))\nLow_O2_Min (minute (min))\nTotal_Exp_Time (hour (hr))\npH (unitless)\nTemp_Max (degrees Celsius (C)\nTemp_Min (degrees Celsius (C)\nTemp_Avg (degrees Celsius (C)\nStimulus_Irradiance (mol photons per second and square meter (mol m-2s-1))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_779387/index.htmlTable https://www.bco-dmo.org/dataset/779387 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_779387.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_779387&showErrors=false&email= BCO-DMO bcodmo_dataset_779387
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925050_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925050_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_925050_v1/ public [Microbial Cellular Abundance Epifluorescent Microscopy] - Microbial cellular abundance growth response through epifluorescent microscopy from the Neuse River Estuary, North Carolina USA from 2021-2022 (Bacteria as Biosensors of Carbon and Energy Flow in Marine Ecosystems: Quantitative Links Between Substrates, Transcripts, and Metabolism) Microbial cellular abundance was enumerated for two microcosm incubation experiments to track the growth response of the microbial community. This dataset targets bacterial and phytoplankton abundance through epiflorescent microscopy. Sample water originated from the West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022. The microcosms were 60-L, conducted in biological duplicates under three light treatment incubations: 12 h light-dark cycle of photosynthetically active radiation (PAR), 12 h light-dark cycle of UV-B radiation, or darkness. Unfiltered sample water was stained with SYBR Green I (Fall 2021 experiment) or DAPI (Spring 2022 experiment) for enumeration at 60x for bacterial and cyanobacterial abundance. Autofluorescence from excitation at 620 nm and 60x was used to enumerate small phytoplankton and cyanobacteria. This dataset highlights patterns in microbial growth across treatments over the course of the incubation and is used to generate cell-specific, normalized rates for associated datasets in the project.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate (unitless)\nIncubation_Day (days)\nTreatment (unitless)\nTank_ID (unitless)\nMethod (unitless)\nStain (unitless)\nExcitation (nanometers (nm))\nMagnification (unitless)\nSize_Fraction (micrometers (um))\ncells_per_L_avg (cells L-1)\ncells_per_L_sd (cells L-1)\nratio_620_tot (unitless)\nratio_err (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_925050_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_925050_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_925050_v1/index.htmlTable https://www.bco-dmo.org/dataset/925050 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_925050_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_925050_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_925050_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908626_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908626_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908626_v1/ public [Microbial Respiration] - Microbial respiration from microcosm experiments conducted under three light treatments using water originating from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022 (Bacteria as Biosensors of Carbon and Energy Flow in Marine Ecosystems: Quantitative Links Between Substrates, Transcripts, and Metabolism) Microbial respiration assays were conducted for two microcosm incubation experiments. Sample water originated from West Bay of the Neuse River Estuary, North Carolina USA in 2021 and 2022. The microcosms were 60-liters, conducted in biological duplicates under three light treatment incubations: 12-hour light-dark cycle of photosynthetically active radiation (PAR), 12-hour light-dark cycle of UV-B radiation, or darkness. Respiration assays of the unfiltered and 5-micron filtered community were initiated every few days using foil-membrane optodes to examine light effects on community respiration.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment_Name (unitless)\nDate (unitless)\nTime_EDT (unitless)\nIncubation_day (days)\nTreatment (unitless)\nTank_ID (unitless)\nSize_fraction_um (micrometers (um))\nrespiration_uM_O2_d_1 (micromoles O2 per day (uM O2 d-1))\nrespiration_uM_C_d_1 (micromoles C per day (uM C d-1))\nr2 (unitless)\nRSE (unitless)\nNo_pts (unitless)\nISO_DateTime_Local (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908626_v1/index.htmlTable https://www.bco-dmo.org/dataset/908626 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908626_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908626_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_908626_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_779425 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_779425.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_779425/ public [Oxygen Metrics] - Oxygen metrics for retinal function in marine invertebrate larvae determined with electroretinograms (Vision-mediated influence of low oxygen on the physiology and ecology  of marine larvae) Oxygen metrics for retinal function in marine invertebrate larvae determined with electroretinograms\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nExperiment_Name (unitless)\nMetric (unitless)\nO2_umol_l (micromole per liter (umol/L))\nO2_ml_l (milliliter per liter (ml/l))\nO2_umol_kg (micromole per kg (umol/kg))\nO2_pO2 (O2 P O2, kiloPascale (kPa))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_779425/index.htmlTable https://www.bco-dmo.org/dataset/779425 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_779425.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_779425&showErrors=false&email= BCO-DMO bcodmo_dataset_779425
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_779540 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_779540.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_779540/ public [Retinal Response] - Retinal responses during exposure to decreasing oxygen partial pressure (pO2) (Vision-mediated influence of low oxygen on the physiology and ecology  of marine larvae) Retinal responses during exposure to decreasing oxygen partial pressure (pO2) in marine invertebrate larvae determined with electroretinograms.\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nExperiment_Name (unitless)\nRound (unitless)\nO2_umol_l (micromole per liter (umol/L))\nO2_ml_l (milliliter per liter (ml/l))\nO2_umol_kg (micromole per kg (umol/kg))\nO2_pO2 (O2 P O2, kiloPascal (kPa))\nn_ctrl_area (unitless)\nRunningAvg (Running Avg, unitless)\nRunAvgLine (Run Avg Line, unitless)\nCondition (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_779540/index.htmlTable https://www.bco-dmo.org/dataset/779540 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_779540.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_779540&showErrors=false&email= BCO-DMO bcodmo_dataset_779540

 
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