BCO-DMO ERDDAP
Accessing BCO-DMO data 		log in    
Brought to you by BCO-DMO    
 
 
griddap Subset tabledap Make A Graph wms files Accessible Title Summary FGDC ISO 19115 Info Background Info RSS Email Institution Dataset ID
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3009 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3009.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3009/ public [calvet_ak_ltop] - AK-LTOP CalVET Net Tow counts and biomass collected from multiple cruises from the Northeast Pacific, 1997-2001 (NEP project) (U.S. GLOBEC Northeast Pacific) AK-LTOP CalVET Net Tow counts and biomass collected from multiple cruises from the Northeast Pacific, 1997-2001.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (dimensionless)\nyear (dimensionless)\nstation_name (dimensionless)\nstation (dimensionless)\nyrday_local (dimensionless)\nmonth_local (dimensionless)\nday_local (dimensionless)\ntime_local (dimensionless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_w (Depth, meters)\ndepth_cast (Depth)\nvol_filt\nspecies (dimensionless)\nfamily (dimensionless)\nphylum (dimensionless)\nsubphylum (dimensionless)\nclass (dimensionless)\nsubclass (dimensionless)\norder (dimensionless)\ninfraorder (dimensionless)\nstage (dimensionless)\nabundance (number per cubic meter)\nbiomass_g (grams wet weight per cubic meter)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3009_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3009/index.htmlTable https://www.bco-dmo.org/dataset/3009 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3009.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3009&showErrors=false&email= BCO-DMO bcodmo_dataset_3009
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918546_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918546_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918546_v1/ public [Effect of phenotypic variation on dogwhelk morphology during eco-evolutionary field experiment] - Effect of phenotypic variation on dogwhelk morphology during an eco-evolutionary field experiment (Coastal mosaics of local adaptation and the eco-evolutionary dynamics of a marine predator-prey interaction) Although there is a growing body of work indicating that ecological and evolutionary processes can have reciprocal feedbacks on one another, few studies have tested these feedbacks in natural field settings at the community level. We tested the ecological consequences of selection on intra-population variation in dogwhelk drilling. We reared juvenile dogwhelks (Nucella canaliculata) on four early-life diet treatments (thin-shelled Mytilus trossulus, two treatments of M. californianus from two populations known to differ in adult shell thickness, and acorn barnacles) and then outplanted the dogwhelks to field cages to quantify the community effects of variation in drilling phenotype on mussel bed succession over a year. Changes in Nucella canaliculata morphology (change in length) were determined over the course of the experiment.\n\ncdm_data_type = Other\nVARIABLES:\nBlock (unitless)\nPlot_Number (unitless)\nPlot_Tidal_Height (meters (m))\nFamily (unitless)\nSite_Latitude (degrees_north)\nlongitude (Site_longitude, degrees_east)\nTreatment (unitless)\nFamily_x_Treatment (unitless)\nSnail_ID (unitless)\nSnail_Tag (unitless)\nSex (unitless)\nLength_initial (millimeters (mm))\nLength_final (millimeters (mm))\nLength_change (millimeters (mm))\nDead_vs_Replaced_vs_Never_found (unitless)\nDate_dead_or_replaced (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918546_v1/index.htmlTable https://www.bco-dmo.org/dataset/918546 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918546_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918546_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_918546_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918401_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918401_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918401_v1/ public [Effects of early-life diet on mortality of juvenile Nucella canaliculata] - Effects of early-life diet on mortality of juvenile Nucella canaliculata quantified in the laboratory after 3 months on experimental diets (Coastal mosaics of local adaptation and the eco-evolutionary dynamics of a marine predator-prey interaction) The field of eco-evolutionary dynamics analyzes the reciprocal impacts that ecological and evolutionary processes have on one another on contemporary timescales. A promising approach for studying eco-evolutionary dynamics is to explore whether variation acting over rapid timescales can impose selection on existing within population-variation in functional traits. The Bodega Marine Reserve population of the Channeled Dogwhelk, Nucella canaliculata, contains a mix of drilling phenotypes. A selection experiment was performed to determine the effects of four early-life diet treatments (thin-shelled Mytilus trossulus mussels, two treatments of M. californianus from two populations known to differ in shell thickness, and acorn barnacles) on N. canaliculata phenotype. Dogwhelks were hatched in the laboratory and mortality of juvenile dogwhelks was quantified in the laboratory after 3 months on the experimental diets.\n\ncdm_data_type = Other\nVARIABLES:\nFamily (unitless)\nPopulation (unitless)\nSite_Latitude (degrees_north)\nlongitude (Site_longitude, degrees_east)\nTreatment (unitless)\nThree_Month_Mortality (percent (%))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918401_v1/index.htmlTable https://www.bco-dmo.org/dataset/918401 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918401_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918401_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_918401_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918460_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918460_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918460_v1/ public [Effects of early-life diet on Nucella canaliculata drilling phenotype] - Effects of early-life diet on Nucella canaliculata drilling phenotype quantified in the laboratory after rearing on different prey treatments (Coastal mosaics of local adaptation and the eco-evolutionary dynamics of a marine predator-prey interaction) The growing field of eco-evolutionary dynamics has highlighted the importance of reciprocal feedbacks between evolutionary and ecological processes. We tested whether selection could act on existing within-population variation in a predatory trait in the marine dogwhelk, Nucella canaliculata. We reared newly hatched dogwhelks on four prey treatments (thin-shelled Mytilus trossulus, two treatments of M. californianus from two populations known to differ in adult shell thickness, and acorn barnacles). To quantify dogwhelk phenotype, we tested the surviving adult dogwhelks on their ability to drill mid-sized (5-7cm long) M. californianus. We found evidence that dogwhelk phenotype varied among the early-life diet treatments.\n\ncdm_data_type = Other\nVARIABLES:\nContainer (unitless)\nRound (unitless)\nPopulation (unitless)\nSite_Latitude (degrees_north)\nlongitude (Site_longitude, degrees_east)\nFamily (unitless)\nTreatment (unitless)\nFamily_x_Treatment (unitless)\nSnail (unitless)\nDrilled_Binary (unitless)\nTotal_Drilled (unitless)\nCheck_1 (unitless)\nCheck_2 (unitless)\nCheck_3 (unitless)\nCheck_4 (unitless)\nCheck_5 (unitless)\nDead (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918460_v1/index.htmlTable https://www.bco-dmo.org/dataset/918460 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918460_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918460_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_918460_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_728110 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_728110/ public [Epibenthic community taxonomy] - Table of taxonomic hierarchy and the sampling method for organisms collection in Aleutian Island kelp forests, June 2016 and July 2017 (Kelp Forest Ecosystem Engineer Loss project) (Collaborative Research: Changes in ecosystem production and benthic biodiversity following the widespread loss of an ecosystem engineer) This dataset includes the taxonomic hierarchy for epibenthic community organisms collected in Aleutian Island kelp forests, based on biomass data. It also lists the method used to sample, either by a scrape collection or by a visual count along a swath.\n\ncdm_data_type = Other\nVARIABLES:\nTaxon (unitless)\nKingdom (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder_Subclass (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nSampling_method (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_728110/index.htmlTable https://www.bco-dmo.org/dataset/728110 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_728110.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_728110&showErrors=false&email= BCO-DMO bcodmo_dataset_728110
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700226.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700226 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700226.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700226/ public [Fish species survey] - Fish species survey from the Bahamas from 2009-2012. (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish) Fish species survey from the Bahamas from 2009-2012.\n\ncdm_data_type = Other\nVARIABLES:\nyear (unitless)\nfamily (unitless)\nsite (unitless)\nsite_treatment (unitless)\ntime2 (Time, unitless)\nsite_pair (unitless)\nsample_type (unitless)\nsubsample_ID (unitless)\nspecies (unitless)\nsize_1 (count)\nsize_2 (count)\nsize_3 (count)\nsize_4 (count)\nsize_5 (count)\nsize_6 (count)\nsize_15 (count)\nsize_20 (count)\nsize_25 (count)\nsize_30 (count)\nsize_35 (count)\nsize_40 (count)\nsize_45 (count)\nsize_50 (count)\nsize_100 (count)\nsize_150 (count)\nsize_200 (count)\nsize_250 (count)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700226/index.htmlTable https://www.bco-dmo.org/dataset/700226 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700226.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700226&showErrors=false&email= BCO-DMO bcodmo_dataset_700226
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2860 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2860.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2860/ public [fish_abund] - Fish abundance data from MOC-10 trawls from the ARSV Laurence M. Gould, RVIB Nathaniel B. Palmer LMG0104, NBP0104, LMG0203, NBP0204 from the Southern Ocean, 2001-2002 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean) Fish abundance data from MOC-10 trawls from the ARSV Laurence M. Gould, RVIB Nathaniel B. Palmer LMG0104, NBP0104, LMG0203, NBP0204 from the Southern Ocean, 2001-2002 (SOGLOBEC project)\n\ncdm_data_type = Other\nVARIABLES:\ncruiseid\nyear (unitless)\nstation\ntow\nyrday_gmt\nmonth_gmt\nday_gmt\ntime_start (HHmm)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_w (Depth, meters)\nnet\ndepth_range (Depth, meters)\ndepth_open (Depth, meters)\ndepth (m)\nvol_filt (meters3)\nfamily\nspecies\ndate_gmt (unitless)\ntime_local (unitless)\ncount\nabund_integ (#/m2)\nbiomass (grams 104m-3)\nbiomass_integ (grams/m2)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_2860_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2860/index.htmlTable https://www.bco-dmo.org/dataset/2860 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2860.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2860&showErrors=false&email= BCO-DMO bcodmo_dataset_2860
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700177 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700177.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700177/ public [Grazing assays] - Grazing preferences by herbivorous fishes in The Bahamas in 2011 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish) Grazing preferences by herbivorous fishes in The Bahamas in 2011\n\ncdm_data_type = Other\nVARIABLES:\ndate (unitless)\nsite (unitless)\nsite_treatment (unitless)\nreplicate_number (unitless)\nreplicate_pair (unitless)\nobservation_time (minutes)\nmicro_treatment (unitless)\nalgae_initial (centimeters squared)\nalgae_pcntCoverChange (Algae Pcnt Cover Change, percent)\nfamily (unitless)\nspecies (unitless)\nfish_size (centimeters)\nbite_number (count)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700177/index.htmlTable https://www.bco-dmo.org/dataset/700177 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700177.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700177&showErrors=false&email= BCO-DMO bcodmo_dataset_700177
log in [Integrated Energy Density data of Marine and Freshwater Organisms] - Marine and Freshwater Energy Density Data Integrated and Organized by Taxonomy from Previous Research Sources (1961 through June 2024) Discovered by a Literature Review (Nutritional ecology of climate change: Impacts on Northwest Atlantic fishes) Energy is the currency of exchange within ecosystems which defines the strength and influence of interactions, particularly between predator and prey. The ability to estimate the productivity of an ecosystem is, therefore, dependent upon the estimation of consumer diet contents and their energetic quality. To estimate growth, reproduction, and, ultimately, survival of individuals, measures of prey quality for predators are essential both at the individual level and for scaling to ecosystem-wide fluxes and pools. Among measures of prey quality, energy density (kiloJoules per gram; kJ/g) is the most used in ecology. Considerable efforts have established estimates of energy densities for many aquatic taxa. However, a database of aquatic organism energetics constructed by integrating and organizing across multiple sources spawning marine and freshwater habitats across the globe is needed to add both depth (more samples to measure within-taxa variation) and breadth (more taxa). To generate a comprehensive energy density database of aquatic organisms, we performed a multifaceted review to find sources from the peer-reviewed and grey literature with a broad search on Web of Science, from citations of related literature, and a haphazard recommendation from experts. Estimates of energy density of whole organism live weights (kJ/g wet weight) were prioritized to better relate to diet and energetics studies. When energy density was only provided per gram dry weight, the dry weight and percentage water was used to calculate energy density per gram wet weight. Sub-organism (i.e. tissue specific) energy density estimates are included (e.g. muscle, liver, egg) when only these were reported. A total of 3810 records are included from 134 sources, covering 2016 unique taxa, of which 1771 (87.76%) are identified at the species level. Species or taxa-specific energy densities ranged from 0.015 to 17.949 kJ/g wet weight (WW) with a mean ± SD = 4.509 ± 1.94 kJ/g WW and median = 4.225 kJ/g WW. Among those phyla with more than three species (n phyla = 9), chordates (n taxa = 1283) had the highest average energy density (mean ± SD; 4.92 ± 1.90; 0.162 – 17.9 kJ/g WW) and ctenophores (n taxa = 4) had the lowest average (0.0988 ± 0.074; 0.03 to 0.205 kJ/g WW). Each record includes the organism taxonomy to the lowest resolution listed in the original source, energetic data available from the source including body composition and energy density data, number of replicates and methodology for measuring energetics information--primarily split between bomb calorimetry and proximate composition--as well as the source's author(s), year, and publication. Additional meta-data are included whenever possible based on details from the original source including the 1) environmental features: area, method, and timing of capture; 2) methodological features: storage method, storage duration, and tissue type measured; and 3) organismal features: weight, length, and sex; as well as any additional notes about the source. This comprehensive database integrates those data discoverable by our search and which met inclusion criteria identified above in a taxonomic and spatial organization framework to facilitate modeling trophic interactions, bioenergetics, growth, productivity, and energy fluxes through marine and freshwater ecosystems.\n\ncdm_data_type = Other\nVARIABLES:\nPhylum (unitless)\n... (41 more variables)\n BCO-DMO bcodmo_dataset_948253_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2326 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_2326.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_2326/ public [MOC10_abund] - Zooplankton abundance data from the 10m2 MOCNESS from R/V Endeavor, R/V Albatross I, and; R/V Oceanus broadscale cruises in the Gulf of Maine and Georges Bank from 1995-1999 (GB project (U.S. GLOBEC Georges Bank) Zooplankton abundance data from the 10m2 MOCNESS from R/V Endeavor, R/V Albatross I, and; R/V Oceanus broadscale cruises in the Gulf of Maine and Georges Bank from 1995-1999\n\ncdm_data_type = Other\nVARIABLES:\ncruiseid (text)\nyear (unitless)\nmonth_local (unitless)\nstation_std (integer)\ntime_of_day (text)\ntime_start (unitless)\ntime_end (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nnet (integer)\ndepth_mid (Depth, meters)\ndepth (m)\nvol_filt (cubic meters (m^3))\nspecies (text)\nabund (number per cubic meters (n/1000 m^3))\nphylum (text)\norder (text)\nfamily\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_2326_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_2326/index.htmlTable https://www.bco-dmo.org/dataset/2326 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_2326.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_2326&showErrors=false&email= BCO-DMO bcodmo_dataset_2326
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908739_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_908739_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_908739_v1/ public [Nucella canaliculata Morphology and Drill Hole Data] - Nucella canaliculata morphology and drill hole data from experiments conducted at Bodega Marine Laboratory from 2020 to 2021 (Coastal mosaics of local adaptation and the eco-evolutionary dynamics of a marine predator-prey interaction) Most predator-prey interactions typically occur over large biogeographic areas with varying abiotic and biotic conditions. If these environmental or biotic gradients are consistent over time they can impose spatially varying selection pressures on the co-evolving predator or prey. Nucella canaliculata is a predatory dogwhelk that inhabits rocky shore ecosystems along the West Coast of North America and preys on multiple barnacle and mussel species by drilling a hole through the shell of their prey. Previous work has documented geographic variation in the ability of N. canaliculata to drill the foundation species, Mytilus californianus. However, the underlying mechanisms and scale of these phenotypic differences haven't been determined. We hatched and raised N. canaliculata from 6 populations, 3 in California and 3 in Oregon, for a year in the laboratory on a common diet of Mytilus trossulus. We then challenged these dogwhelks with a series of M. californianus mussels of increasing size and thickness to identify the largest and thickest mussel drilled for each dogwhelk. There were clear geographic differences in drilling capacity. Dogwhelks from California were able to drill mussels that were substantially larger and thicker than those from Oregon. We are exploring whether selection on drilling capacity is associated with a coastal mosaic of mussel shell thickness and if these differences can influence the dynamics of rocky intertidal ecosystems.\n\ncdm_data_type = Other\nVARIABLES:\nContainer (unitless)\nSite (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nFamily (unitless)\nDogwhelk (unitless)\nSex (unitless)\nLength_Initial (millimeters (mm))\nLength_Final (millimeters (mm))\nLength_change (millimeters (mm))\nCheck (unitless)\nDate (unitless)\n... (4 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_908739_v1/index.htmlTable https://www.bco-dmo.org/dataset/908739 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_908739_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_908739_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_908739_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739345 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739345.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739345/ public [Palatability of algal species] - Feeding rates on and nutritional content of algal species collected in Antarctica, Fiji, and California. (Detecting genetic adaptation during marine invasions) Feeding rates on and nutritional content of algal species collected in Antarctica, Fiji, and California.\n\ncdm_data_type = Other\nVARIABLES:\nDivision (unitless)\nOrder (unitless)\nFamily (unitless)\nGenSpec (Gen Spec, unitless)\nLocation (unitless)\nCollection_Site (unitless)\nZone (unitless)\nLatitude_of_Collection (Latitude, decimal degrees)\nMean_Distribution_Latitude (Latitude, decimal degrees)\nAsh_Free_Dry_Mass (percent per drymass)\nPercent_Protein (percent per drymass)\nPercent_Carbon (percent per drymass)\nPercent_Nitrogen (percent per drymass)\nCarbon_Nitrogen (ratio of absolute milligrams)\nPercent_Phenolics (percent per drymass)\nCrabs_PercentT (Crabs Percent T, percent)\nUrchins_PercentT (Urchins Percent T, percent)\nWet_Mass (grams)\nDry_Mass (grams)\nWM_DM (grams)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739345/index.htmlTable https://www.bco-dmo.org/dataset/739345 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739345.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739345&showErrors=false&email= BCO-DMO bcodmo_dataset_739345
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768138 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768138/ public [Palau lakes: invertebrate barcodes] - Specimen log with OTU identifiers collected from Palau marine lakes (Do Parallel Patterns Arise from Parallel Processes?) List of all barcoded specimens of collected invertebrates with sequence name and OTU identifier collected from Palau marine lakes. FASTA files for major invertebrate groups are included in supplemental files.\n\ncdm_data_type = Other\nVARIABLES:\nOTU_id (unitless)\nID (unitless)\nlake_code (unitless)\nSequenceName (Sequence Name, unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nCRRF_ID (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768138/index.htmlTable https://www.bco-dmo.org/dataset/768138 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768138.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768138&showErrors=false&email= BCO-DMO bcodmo_dataset_768138
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768196 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768196/ public [Palau lakes: voucher summary] - Voucher summary of invertebrates and barcoded OTU's with field identifications, collected from Palau marine lakes (Do Parallel Patterns Arise from Parallel Processes?) Voucher summary of invertebrates and barcoded OTU's with field identifications, collected from Palau marine lakes.\n\ncdm_data_type = Other\nVARIABLES:\nCRRF_ID (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nID_name (unitless)\nOTU_id (specimens)\nlake_code (unitless)\ncomment (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768196/index.htmlTable https://www.bco-dmo.org/dataset/768196 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768196.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768196&showErrors=false&email= BCO-DMO bcodmo_dataset_768196
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918518_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918518_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918518_v1/ public [Percent cover measure of mussel bed succession on rocky shores due to intra-population variation in dogwhelk drilling] - Percent cover measure of mussel bed succession on rocky shores due to intra-population variation in dogwhelk drilling (Coastal mosaics of local adaptation and the eco-evolutionary dynamics of a marine predator-prey interaction) Despite growing interest of eco-evolutionary dynamics, there have been few experiments that test the importance of these feedbacks in natural ecosystems at the community level. A selection experiment on intra-population variation in dogwhelk (Nucella canaliculata) drilling was performed in the laboratory. Dogwhelks were given one of four early-life diet treatments (thin-shelled Mytilus trossulus mussels, two treatments of M. californianus from two populations known to differ in shell thickness, and acorn barnacles) for the first 3 months of life. Surviving adult dogwhelks were outplanted to field cages at Bodega Marine Reserve to test the ecological consequences of divergent phenotypes. Mussel bed succession was quantified by percent cover of sessile organisms in the plots over the course of approximately one year.\n\ncdm_data_type = Other\nVARIABLES:\nBlock (unitless)\nPlot_Number (unitless)\nFamily (unitless)\nSite_Latitude (degrees_north)\nlongitude (Site_longitude, degrees_east)\nTreatment (unitless)\nFamily_x_Treatment (unitless)\nDate (unitless)\nCheck (unitless)\nBare_Rock (percent (%))\nAcorn_Barnacles (percent (%))\nMussels (percent (%))\nGooseneck_Barnacles (percent (%))\nOther_Sessile_Animals (percent (%))\nCoralline_Algae (percent (%))\nAlgae_and_Surfgrass (percent (%))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918518_v1/index.htmlTable https://www.bco-dmo.org/dataset/918518 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918518_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918518_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_918518_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914002_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914002_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_914002_v1/ public [Phenotypic plasticity of the ciliated band of early echinoderm larvae] - Phenotypic plasticity of the ciliated band of seven species of echinoderm larvae, collected between 2020 and 2022 in the laboratory at California State University, Long Beach. (RUI: Effects of large inedible particles on larval feeding, planktonic larval duration, and juvenile quality in marine invertebrates) This experiment assesses phenotypic plasticity of the ciliated band. This dataset contains estimates of the ciliated band generated by both direct measurement and by tracing of the band for non-pluteus larvae, used in evaluation of tracing as a proxy for direct measurement. The data was collected between 2020 and 2022 in the laboratory at California State University, Long Beach.\n\ncdm_data_type = Other\nVARIABLES:\nForm (unitless)\nSpecies (unitless)\nAge (days)\nDev (unitless)\nTreatment (unitless)\nFamily (unitless)\nLarva (unitless)\ncbl (mm)\nbl (mm)\nsl (mm)\nsw (mm)\nsgmean (mm)\nmpo (mm)\npo1 (mm)\npo2 (mm)\nmouth (mm)\ntrace1 (mm)\ntrace2 (mm)\ntrace_full (mm)\ngeospatial_bound_N (degrees_north)\ngeospatial_bound_S (degrees_north)\ngeospatial_bound_E (degrees_east)\ngeospatial_bound_W (degrees_east)\nexperiment_location_lat (degrees_north)\nexperiment_location_long (degrees_east)\nexperiment_start (unitless)\nexperiment_end (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_914002_v1/index.htmlTable https://www.bco-dmo.org/dataset/914002 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_914002_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_914002_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_914002_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3817 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3817.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3817/ public [seal_prey_species_counts] - Counts of prey species found in harbor seal scat samples collected in the San Juan Islands from 2005-2008 (Seal_response_to_prey project) (Responses of Seals and Sea Lions to Increased Rockfish Density) Counts of prey species found in harbor seal scat samples collected in the San Juan Islands from 2005-2008.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (text)\ncommon_name (text)\nfamily (text)\nseason (text)\ncount (integer)\npcnt_unweighted (%)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3817/index.htmlTable https://www.bco-dmo.org/dataset/3817 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3817.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3817&showErrors=false&email= BCO-DMO bcodmo_dataset_3817
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916958_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_916958_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_916958_v1/ public [Siphonophore bulk stable isotopes] - Bulk stable isotopes from siphonophores collected during four research cruises on the R/V Wester Flyer in the California Current Ecosystem between 2019 and 2021 (Collaborative research: The effects of predator traits on the structure of oceanic food webs) Samples of siphonophores (Cnidaria, Hydrozoa) were collected using blue‑water diving, midwater trawls, and remotely operated vehicles in the California Current Ecosystem, from 0 to 3,000 meters depth. Siphonophore samples were collected on four research cruises on the R/V Wester Flyer between 2019-2021. To remove potential biases associated with tissue‑specific variability in stable isotope values, the gelatinous swimming bells (nectophores) of siphonophores were sampled. This approach was possible for most specimens, except for physonect species that are extremely fragile or have nectosomes that are a small fraction of the colony length and are often not collected. For these species (e.g., Apolemia spp.), the gelatinous bracts and pieces of the siphosome, excluding gastrozooids, were used. For small individuals (Diphyes dispar, Nanomia bijuga, and Sphaeronectes koellikeri), nectophores from several colonies that were captured at the same time and sampling location were pooled to obtain an adequate mass for isotope analyses. A subset of samples was selected for compound-specific isotope analysis of amino acids. These specific taxa were selected as representatives of different depth habitats, suborders, and hypothesized diets. Bulk and compound-specific isotope analyses were performed at the University of Hawaii's Biogeochemistry Stable Isotope Facility. This dataset includes the bulk stable isotope measurements along with metadata for specimens when possible (collection month and year, latitude, longitude, depth).\n\ncdm_data_type = Other\nVARIABLES:\nShip (unitless)\nChief_Scientist (unitless)\nCruise_Name (unitless)\nYear (unitless)\nMonth (unitless)\nFamily (unitless)\nGenus (unitless)\nBest_Taxonomic_ID (unitless)\ndepth (Depth_m, m)\nLatitude (degrees_north)\nlongitude (degrees_east)\nEAweight_mg (milligrams (mg))\n... (4 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_916958_v1/index.htmlTable https://www.bco-dmo.org/dataset/916958 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_916958_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_916958_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_916958_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3896 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3896.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3896/ public [species list] - Names, codes, and characteristics of species observed during reef surveys in the Bahamas (Lionfish Invasion project) (Ecological Release and Resistance at Sea: Invasion of Atlantic Coral Reefs by Pacific Lionfish) Names, codes, and characteristics of species observed during reef surveys in the Bahamas (Lionfish Invasion project).\n\ncdm_data_type = Other\nVARIABLES:\nspecies_code (dimensionless)\nspecies (text)\nname_change (0 or 1)\nspecies_new (text)\ncommon_name (text)\nfamily (text)\ntransient (0 or 1)\npiscivore (0 or 1)\nherbivore (0 or 1)\nmature_lt_5cm (0 or 1)\nobligate_cleaner (0 or 1)\nfaculative_cleaner (0 or 1)\ninvertebrate (0 or 1)\nLW_a (numeric)\nLW_b (numeric)\nLW_c (numeric)\nLW_ref (code)\nspecies_substitute (text)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3896/index.htmlTable https://www.bco-dmo.org/dataset/3896 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3896.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3896&showErrors=false&email= BCO-DMO bcodmo_dataset_3896
log in [Subsurface Nitrospirota and Nitrospinota Origins] - Collection of subsurface bacteria Nitrospirota and Nitrospinota genome data including IMG and NCBI accessions for sequence datasets in June 2021 (Slow Life in Crust project) (Microbial activity in the crustal deep biosphere) The phyla Nitrospirota and Nitrospinota have received significant research attention due to their unique mitrogen metabolisms important to biogeochemical and industrial processes. These phyla are common inhabitants of marine and terrestrial subsurface environments and contain members capable of diverse physiologies in addition to nitrite oxidation and complete ammonia oxidation. We used phylogenomics and gene-based analysis with ancestral state reconstruction and gene-tree-species tree reconciliation methods to investigate the life histories of these two phyla. This dataset includes list of previously-published sequence datasets that were used for the analysis. The data and interpretations are published at DOI 10.1038/s41396-023-01397-x. Additional metadata such as NCBI accessions, assembly release dates, and NCBI taxon ids were added in December 2024.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nIMG_genome_id (unitless)\nGenBank_assembly (unitless)\nSample (unitless)\nCorrected_BioSample (unitless)\nBioProject (unitless)\nrelease_date (unitless)\nlast_updated_date (seconds since 1970-01-01T00:00:00Z)\npublication_date (seconds since 1970-01-01T00:00:00Z)\nDomain (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nNCBI_organism_taxid (unitless)\nIsolation_Source (unitless)\nIsolationPlot (unitless)\n... (11 more variables)\n BCO-DMO bcodmo_dataset_933610_v1

 
ERDDAP, Version 2.22
Disclaimers | Privacy Policy | Contact