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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745527/ public [18S rRNA gene tag sequences from DNA and RNA] - NCBI accession metadata for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014 (Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series) Raw DNA and RNA V4 tag sequences include spatially and temporally distinct samples from coastal California.  Samples were collected in Niskin bottles with a CTD rosette at the San Pedro Ocean Time-series (SPOT) between April of 2013 and January of 2014.  This dataset contains sequence data accession numbers and metadata for the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP070577, BioProject: PRJNA311248).\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nsample_name (unitless)\nSRA_run_ID (unitless)\nSRA_run_link (unitless)\nlibrary_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletpe2 (unitless)\nfilename2 (unitless)\ndepth2 (Depth, various)\nlatitude (degrees_north)\nlongitude (degrees_east)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_745527_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745527/index.htmlTable https://www.bco-dmo.org/dataset/745527 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745527.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745527&showErrors=false&email= BCO-DMO bcodmo_dataset_745527
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_847425_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_847425_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_847425_v1/ public [Acropora cervicornis bleaching sequences] - Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 (Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility) This dataset contains information about sequences of coral the Acropora cervicornis collected from host colonies (genets) at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys, USA in August and September of 2015. The sequence data can be found in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under accession number SRP267474 with the associated BioProject PRJNA639601.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nsample_name (unitless)\nSRA_run_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletype2 (unitless)\nfilename2 (unitless)\nsite (unitless)\ncollection_date (unitless)\nlat (degrees_north)\nlongitude (degrees_east)\nHost_organism (unitless)\ngenotype (unitless)\nbleach_status (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_847425_v1/index.htmlTable https://www.bco-dmo.org/dataset/847425 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_847425_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_847425_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_847425_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_767737.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_767737 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_767737.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_767737/ public [ADCP Lake Michigan 2018] - Velocity observations from a mooring at Station AT55 in Lake Michigan from 2018-04-05 to 2018-04-20 (Collaborative Research: Regulation of plankton and nutrient dynamics by hydrodynamics and profundal filter feeders) A fixed mooring was established to measure water column velocities in Lake Michigan near Milwaukee, WI, during 2018 from April 5 \\u2013 April 20, 2018 at a 55m depth site.  The mooring involved a large tripod, upon which two ADCPs (Nortek Aquadopp HR profiler and Nortek Signature 500) were mounted to measure water column velocities between 13cm and 5087cm above the bed.\n\ncdm_data_type = Other\nVARIABLES:\nHAB_cm (centimeters (cm))\nHAB_m (meters (m))\nlatitude (degrees_north)\nlongitude (degrees_east)\ncomponent (unitless)\nfilename (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nvel (meters per second (m/s))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_767737_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_767737/index.htmlTable https://www.bco-dmo.org/dataset/767737 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_767737.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_767737&showErrors=false&email= BCO-DMO bcodmo_dataset_767737
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_785167.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_785167 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_785167/ public [Crassostrea virginica gonad MBD-BSseq] - Eastern oyster gonad methylation patterns in response to experimental ocean acidification (Collaborative Research: Does ocean acidification induce a methylation response that affects the fitness of the next generation in oysters?) Eastern oyster gonad methylation patterns in response to experimental ocean acidification at pCO2 levels 400 and 2800 ppm. Oysters were collected from an intertidal oyster reef in Plum Island Sound, MA, Gulf of Maine in mid-July 2016. This dataset includes GenBank BioProject PRJNA513384 metadata.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfilename2 (unitless)\nMBD_cv_id (unitless)\npCO2_treatment (P CO2 Treatment, ppm)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_785167/index.htmlTable https://www.bco-dmo.org/dataset/785167 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_785167.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_785167&showErrors=false&email= BCO-DMO bcodmo_dataset_785167
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_773146 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_773146.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_773146/ public [CTD Individual Profiles] - CARIACO time series individual CTD profiles from B/O Hermano Gines HG93_CARIACO in the CARIACO basin from 1995-2017 (CARIACO project) (CARIACO Ocean Time-Series Program) This collection of data comprises all the Individual CTD profiles from the Cariaco basin taken as part of the CARIACO Ocean Time-Series Program from November 1995 to January 2017.  These include all the CTD profiles taken during the monthly hydrographic cruises at the CARIACO station (10.50\\u00b0 N, 64.67\\u00b0 W), as well as other CTD profiles from extra legs of the monthly cruises, and few spatial cruises collected in and around the Cariaco basin. CTD\\u2019s Salinity and Oxygen where calibrated with in-situ measurements (see Acquisition Description). This dataset is complimentary to the monthly \\u201cCTD Composite Profiles\\u201d (https://www.bco-dmo.org/dataset/3092), and many fields are very similar to that data-base. The difference with that dataset, is that here we present all the CTD casts for each cruise, the CTD profiles are single (not composite), and the salinity and oxygen profiles were calibrated with in-situ measurements, but fluorescence was no calibrated.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_no (unitless)\nCruiseID (Cruise ID, unitless)\nLeg (unitless)\nStationID (Station ID, unitless)\nCast (unitless)\nCastName (Cast Name, unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nLATITUDE (decimal_degrees)\nLONGITUDE (decimal_degrees)\nyear_localT (Year Local T, unitless)\nmonth_localT (Month Local T, unitless)\nday_localT (Day Local T, unitless)\nhour_localT (Hour Local T, unitless)\nmin_localT (Min Local T, unitless)\nDate_Time_Local (unitless)\ntime (Date Time GMT, seconds since 1970-01-01T00:00:00Z)\n... (45 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_773146_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_773146/index.htmlTable https://www.bco-dmo.org/dataset/773146 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_773146.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_773146&showErrors=false&email= BCO-DMO bcodmo_dataset_773146
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3918 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3918.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3918/ public [CTD Profiles] - Two decibar-averaged CTD profiles collected at Bermuda Atlantic Time Series sites in the Sargasso Sea ongoing from 1988 (BATS project) (Bermuda Atlantic Time-series Study) CTD Profiles. Profiles of basic CTD measurements of (Pressure, Depth, Temperature, Conductivity, and Salinity)  are reported along with dissolved oxygen, beam attenuation, and relative fluorescence, at one-decibar averages.  The profiles were collected during monthly hydrographic cruises to the BATS site at 31° 40' N 64° 10'W and during biweekly cruises to a neighbouring location (32°10′N 64°30′W), known as Hydrostation \"S.\"\n\ncdm_data_type = Point\nVARIABLES:\ncruise_type (unitless)\ncruise_type_text (unitless)\ncast_ID (unitless)\ncruise_number (unitless)\ncast_number (unitless)\ndecimal_year (years)\ntime (ISO Datetime Deployed, seconds since 1970-01-01T00:00:00Z)\nDecimal_date_deployed (unitless)\nDecimal_day_deployed (unitless)\nISO_datetime_recovered (seconds since 1970-01-01T00:00:00Z)\nDecimal_date_recovered (unitless)\nLongitude_CTD_deployed (Longitude, degrees_east)\nLatitude_CTD_deployed (Latitude, degrees_north)\nLongitude_CTD_recovered (Longitude, degrees_east)\nLatitude_CTD_recovered (Latitude, degrees_north)\nfilename (unitless)\ninfo_filename (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nPressure (decibar)\ndepth (m)\nBeam_Attenuation_Coefficient (per meter)\nConductivity (Sea Water Electrical Conductivity, Siemens per meter)\n... (5 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3918_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3918_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3918/index.htmlTable https://www.bco-dmo.org/dataset/3918 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3918.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3918&showErrors=false&email= BCO-DMO bcodmo_dataset_3918
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_757784.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_757784 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_757784.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_757784/ public [EN614 Hydrography] - Hydrographic data collected during casts with a CTD-rosette system on R/V Endeavor cruise EN614 from May to June 2018 (Collaborative Research: Impact of the Amazon River Plume on Nitrogen Availability and Planktonic Food Web Dynamics in the Western Tropical North Atlantic) Hydrographic data collected during casts with a CTD-rosette system on R/V Endeavor cruise EN614 from May to June 2018.\n\ncdm_data_type = Other\nVARIABLES:\nCruise (unitless)\nStation (unitless)\nSite (unitless)\nStn_Event (unitless)\nFilename (unitless)\nScan (Unitless)\nTimeJ (Time J, unitless)\nTimeS (Time S, seconds)\ntime (Date ODV, seconds since 1970-01-01T00:00:00Z)\nPrDM (PR DM, decibars (db))\ndepth (Dep SM, m)\nT090C (T090 C, degrees Celsius)\nT190C (T190 C, degrees Celsius)\nT2_T190C (T2 T190 C, degrees Celsius)\nC0S_m (C0 S M, Siemens per meter (S/m))\nC1S_m (C1 S M, Siemens per meter (S/m))\nC2_C1S_m (C2 C1 S M, Siemens per meter (S/m))\nV0 (volts)\nCStarAt0 (CStar At0, reciprocal meters (1/m))\nCStarTr0 (CStar Tr0, unitless (percent))\nV1 (volts)\nFlECO_AFL (Fl ECO AFL, milligrams per cubic meter (mg/m^3))\nV2 (volts)\nAltM (Alt M, meters (m))\nV3 (volts)\nPar (Downwelling Photosynthetic Photon Radiance In Sea Water, micromoles photons per square meter per second (umol photons/m^2/sec))\n... (25 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_757784_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_757784/index.htmlTable https://www.bco-dmo.org/dataset/757784 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_757784.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_757784&showErrors=false&email= BCO-DMO bcodmo_dataset_757784
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_919606_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_919606_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_919606_v1/ public [Globorotaloides hexagonus trace element ablation profiles] - Globorotaloides hexagonus trace element ablation profiles from samples collected from MOCNESS tows from R/V Sikuliaq cruise SKQ201701S in 2017 (Glacial-Interglacial Changes in Oxygen Minimum Zones Using Deep-Dwelling, Low-Oxygen Planktic Foraminifera) The planktic foraminifer Globorotaloides hexagonus is found in temperate to tropical oxygen minimum zones (OMZs). Their preferred habitat make G. hexagonus an important species for the development of oxygen-related paleoproxies. Here we report trace-element-to-calcium (TE/Ca) ratios with depth in the shell of G. hexagonus from the Eastern Tropical North Pacific (21 N, 117 W) . Individuals were isolated from a series of Multiple Opening/Closing Net and Environmental Sensing System (MOCNESS) tows on the R/V Sikuliaq  in January and February 2017 and represent a wide range of depth habitats and  oxygen concentrations. Oxygen concentration and depth from MOCNESS are provided in the metadata for each sample. Trace elements (Mg, Mn, Zn, Sr, Ba, Ca) were quantified using laser ablation ICP-MS from the outside to the inside of the shell, allowing for a reconstruction of TE/Ca with depth in the shell. MOCNESS data were collected by Dr. Karen Wishner (URI),  ablation data were collected by Dr. Catherine Davis (NCSU) and Dr. Jennifer Fehrenbacher (OSU), and data were prepared by Dr. Shannon Doherty (NCSU and UAF).\n\ncdm_data_type = Other\nVARIABLES:\nfilename (unitless)\nMOCNESS_cast (unitless)\nnet (unitless)\nforam (unitless)\nfile (unitless)\ntime_elapsed (Time, seconds)\nX24Mg_43Ca (mol per mol)\nX25Mg_43Ca (mol per mol)\nX55Mn_43Ca (mol per mol)\nX66Zn_43Ca (mol per mol)\nX88Sr_43Ca (mol per mol)\nX138Ba_43Ca (mol per mol)\ndepth_micron (Depth, micron)\ndate_time_UTC (unitless)\nLat_in (degrees_north)\nlongitude (Lat_out, degrees_east)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_919606_v1/index.htmlTable https://www.bco-dmo.org/dataset/919606 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_919606_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_919606_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_919606_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_930084_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_930084_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_930084_v1/ public [Kāneʻohe Bay Time-series - microbial community] - Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements  taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi (Population genomics and ecotypic divergence in the most dominant lineage of marine bacteria) These data include temperature, pH, salinity, chlorophyll a concentrations, cellular abundances of Prochlorococcus, Synechococcus, photosynthetic picoeukaryotes, and heterotrophic bacteria, and 16S ribosomal RNA gene amplicon libraries from 200 surface seawater samples collected as part of the Kāneʻohe Bay Time-series (KByT). Near-monthly sampling of surface seawater was conducted between August 2017 to June 2019 at 10 sites within coastal waters of Kāneʻohe Bay, Oʻahu, Hawaiʻi and in the adjacent offshore. Instruments used were a YSI 6,600 sonde, a Turner 10AU fluorometer, an EPICS ALTRA flow cytometer, and an Illumina MiSeq v2 platform.\n\nThese data characterize the partitioning of microbial communities across sharp physiochemical gradients in surface seawaters connecting nearshore and offshore waters in the tropical Pacific. This study provides evidence for the ecological differentiation of SAR11 marine bacteria across nearshore to offshore waters in the tropical Pacific and further increases our understanding of how SAR11 genetic diversity partitions into distinct ecological units. Data were collected by Sarah J. Tucker, Kelle C. Freel, Elizabeth A. Monaghan, Clarisse E. S. Sullivan, Oscar Ramfelt, Yoshimi M. Rii, and Michael S. Rappé.\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\ncollection_date (unitless)\ndepth (m)\nenv_broad_scale (unitless)\nenv_local_scale (unitless)\nenv_medium (unitless)\ngeo_loc_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nSite_name (unitless)\nchlorophyll_a_ug_per_L (micrograms per Liter)\nph (no unit)\nsalinity (ppt)\n... (21 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_930084_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_930084_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_930084_v1/index.htmlTable https://www.bco-dmo.org/dataset/930084 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_930084_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_930084_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_930084_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745518 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745518/ public [Microbial eukaryotic focused metatranscriptome data] - Microbial eukaryotic focused metatranscriptome data from seawater collected in coastal California in May of 2015 (Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series) Seawater was collected via Niskin bottles mounted with a CTD from the San Pedro Ocean Time-series (SPOT) station off the coast of Southern California near the surface (5 m), 150 and 890 m, in late May 2015. Raw sequence data was generated as part of a metatranscriptome study targeting the protistan community.  Raw sequences are available at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP110974, BioProject: PRJNA391503).  Sequences for BioProject PRJNA608423 will be available at NCBI on Jan 1st, 2021.\\r\\n\\r\\nThese data were published in Hu et al. (2018).\n\ncdm_data_type = Other\nVARIABLES:\nSRA_run (unitless)\nSRA_run_link (unitless)\nSRA_study (unitless)\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nsample_name (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfilename2 (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745518/index.htmlTable https://www.bco-dmo.org/dataset/745518 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745518.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745518&showErrors=false&email= BCO-DMO bcodmo_dataset_745518
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3782.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3782 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3782.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3782/ public [Niskin bottle samples] - Niskin bottle water samples and CTD measurements at water sample depths collected at Bermuda Atlantic Time-Series sites in the Sargasso Sea ongoing from 1988 (Bermuda Atlantic Time-series Study) Niskin bottle samples. CTD measurements at water sample depths and Niskin bottle water samples from the Bermuda Atlantic Time-series Study (BATS) and from Station S, located 25 km SE of Bermuda (32°10N, 64°30W) Measurements have been collected since 1988 and include nutrients, biogeochemical concentration, bacterial enumeration, and cyanobacteria..\n\ncdm_data_type = Point\nVARIABLES:\ncruise_type (unitless)\ncruise_type_text (unitless)\ncruise_number (unitless)\ncast_number (unitless)\ndecy (year)\ntime (ISO Datetime, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nfilename (unitless)\nId (unitless)\ndepth (m)\nniskin_number (unitless)\np1 (nanograms per kilogram)\np2 (nanograms per kilogram)\np3 (nanograms per kilogram)\np4 (nanograms per kilogram)\np5 (nanograms per kilogram)\np6 (nanograms per kilogram)\np7 (nanograms per kilogram)\np8 (nanograms per kilogram)\np9 (nanograms per kilogram)\np10 (nanograms per kilogram)\np11 (nanograms per kilogram)\np12 (nanograms per kilogram)\n... (41 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3782_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_3782_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3782/index.htmlTable https://www.bco-dmo.org/dataset/3782 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3782.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3782&showErrors=false&email= BCO-DMO bcodmo_dataset_3782
log in [Particle Flux] - Sediment trap flux measurements for the Hawaii Ocean Time-Series (HOT) project from December 1988 to November 2021 at Station ALOHA ([Current] Hawaii Ocean Time-series (HOT): 2018-2023;  [Previous] Hawaii Ocean Time-series (HOT): Sustaining ocean ecosystem and climate observations in the North Pacific Subtropical Gyre) Particle flux measurements from the Hawaii Ocean Time-Series (HOT). Particle flux was measured at a standard reference depth of 150 meters using multiple cylindrical particle interceptor traps deployed on a free-floating array for approximately 60 hours during each cruise. Sediment trap design and collection methods are described in Winn et al. (1991). Samples were analyzed for particulate carbon, nitrogen, phosphorus, and silica. Typically six traps are analyzed for particulate carbon and particulate nitrogen, three for particulate phosphorus, and another three traps for particulate silica.\n\ncdm_data_type = Other\nVARIABLES:\nCruise (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nStart_ISO_DateTime_UTC (unitless)\nEnd_ISO_DateTime_UTC (unitless)\ndepth (m)\nTreatment (unitless)\nCarbon_flux (milligrams per square meter per day (mg/m^2/d))\nCarbon_sd_diff (milligrams per square meter per day (mg/m^2/d))\nCarbon_numreps (unitless)\nNitrogen_flux (milligrams per square meter per day (mg/m^2/d))\nNitrogen_sd_diff (milligrams per square meter per day (mg/m^2/d))\nNitrogen_numreps (unitless)\nPhosphorus_flux (milligrams per square meter per day (mg/m^2/d))\nPhosphorus_sd_diff (milligrams per square meter per day (mg/m^2/d))\nPhosphorus_numreps (unitless)\nMass_flux (milligrams per square meter per day (mg/m^2/d))\nMass_sd_diff (milligrams per square meter per day (mg/m^2/d))\nMass_numreps (unitless)\nSilica_flux (milligrams per square meter per day (mg/m^2/d))\nSilica_sd_diff (milligrams per square meter per day (mg/m^2/d))\n... (11 more variables)\n BCO-DMO bcodmo_dataset_737393_v2
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924886_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924886_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_924886_v1/ public [RADseq data from Atlantic silversides used for linkage and QTL mapping] - RADseq data from Atlantic silversides used for linkage and QTL mapping. (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline) ddRADseq data from 568 Atlantic silversides (Menidia menidia) that are either F1 or F2 offspring to wild-caught parents from Georgia and New York used in a controlled breeding experiment. The data were used to build linkage maps for each of the separate populations and their inter-population cross, and to perform quantitative trait locus mapping.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (units)\nbiosample_accession (units)\ntaxonomic_name (units)\nmother_f0_sampling_location (units)\nlat_mother (degrees_north)\nlon_mother (degrees_east)\nfather_f0_sampling_location (units)\nlat_father (degrees_north)\nlon_father (degrees_east)\nSRA_study_accession (units)\nSRA_experiment_accession (units)\nSRA_run_accession (units)\nlibrary_ID (units)\ntitle (units)\nlibrary_strategy (units)\nlibrary_source (units)\nlibrary_selection (units)\nlibrary_layout (units)\nplatform (units)\ninstrument_model (units)\ndesign_description (units)\nfiletype (units)\nsample_name (units)\nfilename (units)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_924886_v1/index.htmlTable https://www.bco-dmo.org/dataset/924886 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_924886_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_924886_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_924886_v1
log in [Salp and pteropod associated microorganisms] - Salp and pteropod associated microorganisms from the  Western Edge of the Gulf Stream sampled in September 2019. (Collaborative Research: Comparative feeding by gelatinous grazers on microbial prey) Microbial mortality impacts the structure of food webs, carbon flow, and the interactions that create dynamic patterns of abundance across gradients in space and time in diverse ecosystems. In the oceans, estimates of microbial mortality by viruses, protists, and small zooplankton do not account fully for observations of loss, suggesting the existence of underappreciated mortality sources. We examined how ubiquitous mucous mesh feeders (i.e. gelatinous zooplankton) could contribute to microbial mortality in the open ocean. We coupled capture of live animals by blue-water diving to sequence-based approaches to measure the enrichment and selectivity of feeding by two coexisting mucous grazer taxa (pteropods and salps) on numerically dominant marine prokaryotes. We show that mucous mesh grazers consume a variety of marine prokaryotes and select between coexisting lineages and similar cell sizes. We show that Prochlorococcus may evade filtration more than other cells and that planktonic archaea are consumed by macrozooplanktonic grazers. Discovery of these feeding relationships identifies a new source of mortality for Earth's dominant marine microbes and alters our understanding of how top-down processes shape microbial community and function.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nmessage (unitless)\nsample_name (unitless)\nsample_title (unitless)\norganism (unitless)\ncollection_date (unitless)\ndepth_f (Depth, feet)\nenv_broad_scale (unitless)\nenv_local_scale (unitless)\nenv_medium (unitless)\ngeo_loc_name (unitless)\nlatitude (Sampling_lat, degrees_north)\nlongitude (Sampling_lon, degrees_east)\n... (15 more variables)\n BCO-DMO bcodmo_dataset_926841_v1
log in [SPC-UW-ZooCam classified zooplankton images] - Classified Zooplankton ZooCam Images Captured by the Hoodsport ORCA Profiling Mooring Mounted SPC-2 Zoocam in the Hood Canal, Puget Sound, Washington from July to September 2018 (Zooplankton Swimming project) (Causes and consequences of hypoxia and pH impacts on zooplankton: Linking movement behavior  to vertical distribution.) This dataset consists of images of individual zooplankton taken by an in-situ camera system (the SPC UW ZooCam) that was deployed on the Hoodsport ORCA profiling mooring in Hood Canal (Puget Sound), WA in summer 2018. Images were taxonomically identified by expert zooplankton ecologists. These images are sorted into folders by taxonomic identification and were used as a training set for Machine Learning classification of unknown images to study the behavior of zooplankton under varying ocean conditions.\n\ncdm_data_type = Other\nVARIABLES:\nfilename (unitless)\nrelative_filepath (unitless)\nfilesize_bytes (bytes)\nmd5sum (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\naugmented_image_flag (unitless)\ndatetime_utc (unitless)\nroi_x (image_analysis)\nroi_y (image_analysis)\nroi_w (image_analysis)\nroi_h (image_analysis)\nroi_image_size (pixels)\n BCO-DMO bcodmo_dataset_927518_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_746654.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_746654 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_746654.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_746654/ public [Trichodesmium AHL metatranscriptomes_AE1409] - Trichodesmium AHL amendment metatranscriptomic reads accessions and metadata (Dissolved Phosphorus Processing by Trichodesmium Consortia: Quantitative Partitioning, Role of Microbial Coordination, and Impact on Nitrogen Fixation) Trichodesmium is a marine, diazotrophic cyanobacterium that plays a central role in the biogeochemical cycling of carbon and nitrogen. Colonies ubiquitously co-occur with a diverse microbiome of heterotrophic bacteria. Here we show that manipulation of the microbiome with quorum sensing acyl homoserine lactone (AHL) molecules significantly modulated rates of N2 fixation by Trichodesmium collected from the western North Atlantic, with both positive and negative effects of varied magnitude. Changes in Trichodesmium N2 fixation did not clearly correlate with changes in microbiome composition or geochemical patterns. Metatranscriptome sequencing revealed significant changes in the relative abundance of microbiome transcripts encoding metabolic functions consistent with quorum sensing responses in model bacteria. There was little overlap in specific microbiome transcriptional responses to AHL addition between stations, and this variability in microbiome gene expression may underpin the heterogeneous changes in Trichodesmium N2 fixation. These data suggest the microbiome could play a large and previously overlooked role in modulating Trichodesmium N2 fixation. This metadata form describes the metatranscriptomic sequencing reads that were used in the study.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nassembly (unitless)\nfilename (unitless)\n... (7 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_746654/index.htmlTable https://www.bco-dmo.org/dataset/746654 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_746654.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_746654&showErrors=false&email= BCO-DMO bcodmo_dataset_746654
log in [Year 1 orbitrap MZML files] - Raw proteome mass spectrometry data (.mzML files) from pacific herring embryos sampled at Semiahmoo Bay between February and April 2022 (MCA: Utilizing high-throughput proteomics to build a conceptual model of the effects of environmental change on early life stages of genetically diverse herring populations) These are the raw data files from 5 cohorts of pacific herring embryos collected from Feb through April of 2022.  Embryos were homogenized, and digested for proteomic analysis on a Lumos Orbitrap.  Pooled samples were used with narrow window scans for library generation. The purpose of this data set is exploratory analysis for seasonal differences between early life stage proteome of pacific herring.  All embryos are believed to be from the Semiahmoo Bay population since the Cherry Point population had no spawn detected in 2022.\n\ncdm_data_type = Other\nVARIABLES:\nLocation (unitless)\nDate_Sampling (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nSample_ID (unitless)\nCohort (unitless)\nReplicate (unitless)\nMass_Spec_Run_Number (unitless)\nDate_Mass_Spec (unitless)\nSample_Type (unitless)\nFilename (unitless)\n BCO-DMO bcodmo_dataset_938909_v1

 
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