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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
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| log in | [Apostichopus californicus 16S rRNA V4 Sequences] - 16S rRNA V4 sequence metadata from Apostichopus californicus-associated flavivirus experiment under suboxic conditions and organic matter amendment (Exploring the role of boundary layer microbial remineralization in flavivirus-host dynamics) | Microbial activities at the animal-water interface are hypothesized to influence viral replication and possibly contribute to pathology of echinoderm wasting diseases due to hypoxic stress. We assessed the impacts of enhanced microbial production and suboxic stress on Apostichopus californicus (urn:lsid:marinespecies.org:taxname:529363) associated flavivirus (PcaFV) load in a mesocosm experiment. This dataset contains 16S rRNA V4 amplicon sequencing metadata for this experiment. Organic matter amendment and suboxic stress resulted in lower PcaFV load, which also correlated negatively with animal mass loss and microbial activity at the animal-water interface. These data suggest that PcaFV replication and persistence was best supported in healthier specimens. Our results do not support the hypothesis that suboxic stress or microbial activity promote PcaFV replication, but rather that PcaFV appears to be a neutral or beneficial symbiont of Apostichopus californicus.\n\ncdm_data_type = Other\nVARIABLES:\nsample_name (unitless)\nbioproject_accession (unitless)\nbiosample (unitless)\norganism (unitless)\nspecimen_collection_date (unitless)\nswab_collection_date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nenv_broad_scale (unitless)\nenv_local_scale (unitless)\nenv_medium (unitless)\ngeo_loc_name (unitless)\nhost (unitless)\nhost_subject_id (unitless)\nreplicate_ID (unitless)\nhost_tissue_sampled (unitless)\nhost_NCBI_taxid (unitless)\nAphiaID (unitless)\nLSID (unitless)\n | BCO-DMO | bcodmo_dataset_984835_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_845039_v2 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_845039_v2.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_845039_v2/ | public | [Coral Associated Microbes on Mo'orean Coral Reefs] - Coral associated microbes on coral, sediment and water sampled from coral reefs in Mo'orea, French Polynesia in 2017 and 2018 (Collaborative Research: Viral Reefscapes: The Role of Viruses in Coral Reef Health, Disease, and Biogeochemical Cycling) | Three species of coral, plus water and sediment, were sampled at 21 sites around the island of Mo'orea, French Polynesia during the dry and rainy seasons in 2017 and 2018. Coral associated microbes (bacteria and archaea) were investigated and their community composition characterized through sequencing of the 16S rRNA gene.\n\ncdm_data_type = Other\nVARIABLES:\nBioSample_accession (unitless)\nSample_name (unitless)\nOrganism (unitless)\nCollection_date (unitless)\nDepth (meters (m))\nEnv_Local_Scale (unitless)\nGeo_Loc_Name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nHost (unitless)\nHost_Subject_ID (unitless)\nSequencing_Replicate (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_845039_v2_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_845039_v2_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_845039_v2/index.htmlTable | https://www.bco-dmo.org/dataset/845039
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_845039_v2.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_845039_v2&showErrors=false&email= | BCO-DMO | bcodmo_dataset_845039_v2 |