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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774859.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774859 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_774859.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_774859/ public [AE1910 CTD Bottles] - Bottle data from R/V Atlantic Explorer cruise AE1910 during May 2019 (Collaborative Research: Diel physiological rhythms in a tropical oceanic copepod) Bottle data from R/V Atlantic Explorer cruise AE1910 during May 2019.\n\ncdm_data_type = Other\nVARIABLES:\ncast (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nBottle (unitless)\nYear (unitless)\nMonth (unitless)\nDay (unitless)\nHours (unitless)\nMinutes (unitless)\nSeconds (unitless)\ndepth (Dep SM Avg, m)\nDepSM_stdev (Dep SM Stdev, meters (m))\nAltM_avg (Alt M Avg, meters (m))\nAltM_stdev (Alt M Stdev, meters (m))\nCStarTr0_avg (CStar Tr0 Avg, percent?)\nCStarTr0_stdev (CStar Tr0 Stdev, percent?)\nC0S_m_avg (C0 S M Avg, siemens per meter (S/m))\nC0S_m_stdev (C0 S M Stdev, siemens per meter (S/m))\nFlC_avg (Fl C Avg, micrograms per liter (ug/L))\nFlC_stdev (Fl C Stdev, micrograms per liter (ug/L))\nSbeox0_avg (micromoles per kilogram (umol/kg))\nSbeox0_stdev (micromoles per kilogram (umol/kg))\nPar_avg (?)\nPar_stdev (?)\nPrDE_avg (Pr DE Avg, psi)\nPrDE_stdev (Pr DE Stdev, psi)\nSal00_avg (PSU)\n... (8 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_774859_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_774859/index.htmlTable https://www.bco-dmo.org/dataset/774859 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_774859.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_774859&showErrors=false&email= BCO-DMO bcodmo_dataset_774859
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783581 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783581.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_783581/ public [Hawaiian crustose coralline algae dissolved organic matter] - Fluorescent characteristics of the dissolved organic exudates of two species of crustose coralline algae in two water treatments and their effect on the microbial community cell count (Collaborative Research: Dissolved organic matter feedbacks in coral reef resilience: The genomic & geochemical basis for microbial modulation of algal phase shifts) Fluorescent characteristics of the dissolved organic exudates of two species of crustose coralline algae (Hydrolithon reinboldii and Porolithon onkodes) in two water treatments (pre-filtered and unfiltered) and their effect on the microbial community cell count.\n\ncdm_data_type = Other\nVARIABLES:\nWater (unitless)\nInhabitant (unitless)\nReplicate (unitless)\nTimepoint (unitless)\nHours (hours)\nCells (cells per microliter (cells uL-1))\ndelta_Cells (cells per microliter (cells uL-1))\nSurface_Area (square centimeters (cm^2))\nUltra_Violet_Humic_like (Raman units of water (RU))\nMarine_Humic_like (Raman units of water (RU))\nVisible_Humic_like (Raman units of water (RU))\nTryptophan_like (Raman units of water (RU))\nTyrosine_like (Raman units of water (RU))\nPhenylalanine_like (Raman units of water (RU))\nFulvic_Acid_like (Raman units of water (RU))\nDOC (micromoles per liter (umol L-1))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_783581/index.htmlTable https://www.bco-dmo.org/dataset/783581 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_783581.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_783581&showErrors=false&email= BCO-DMO bcodmo_dataset_783581
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_754885.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_754885 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_754885.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_754885/ public [Incubation Data] - Vascular plant and microbial biomarkers of dissolved organic matter data from incubation experiments (Collaborative Research:   Calibration and application of vascular plant and aqueous microbial biomarkers to examine transformations of dissolved organic matter) Incubation experiments were conducted in the dark or using a dark/light cycle. Incubations conducted in the dark alone are classified as \\microbial, and incubations using a dark/light cycle are classified as \\coupled\\.\n\ncdm_data_type = Other\nVARIABLES:\nincubation_type (unitless)\nsite_type (unitless)\ntime_point (unitless)\ndays (days)\nhours (hours)\nExposure (hours)\nDose (MJ/m2)\nIrradiance (W/m2)\nDOC_mg_L (mg/L)\nDOC_mM (DOC M M, mM)\nFuc (nanomoles per liter (nmol/L))\nRha (nanomoles per liter (nmol/L))\nAra (nanomoles per liter (nmol/L))\nGal (nanomoles per liter (nmol/L))\nGlu (nanomoles per liter (nmol/L))\nMan (nanomoles per liter (nmol/L))\nXyl (nanomoles per liter (nmol/L))\nD_Asx (nanomoles per liter (nmol/L))\nL_Asx (nanomoles per liter (nmol/L))\nD_Glx (nanomoles per liter (nmol/L))\nL_Glx (nanomoles per liter (nmol/L))\nD_Ser (nanomoles per liter (nmol/L))\nL_Ser (nanomoles per liter (nmol/L))\nD_His (nanomoles per liter (nmol/L))\nL_His (nanomoles per liter (nmol/L))\n... (69 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_754885/index.htmlTable https://www.bco-dmo.org/dataset/754885 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_754885.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_754885&showErrors=false&email= BCO-DMO bcodmo_dataset_754885
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922818_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922818_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922818_v1/ public [Macrophytes' amelioration of seawater acidity: Comparison among species] - Macrophytes' amelioration of seawater acidity: Comparison among four species of marine macrophytes (Ulva lactuca, Zostera marina, Fucus vesiculosus and Saccharina latissima) from the Gulf of Maine from June to July 2015 (REU Site: Bigelow Laboratory for Ocean Sciences - Undergraduate Research Experience in the Gulf of Maine and the World Ocean) An experiment examining the effects of increased CO2 concentrations upon the capacity of the different species of marine macrophytes to ameliorate seawater acidity via several assays in enclosed well-mixed, airtight chambers with no headspace, was conducted indoors at the Bigelow Laboratory for Ocean Sciences (Maine, USA), in June-July 2015. We explored the individual capacities of four species of marine macrophytes (Ulva lactuca, Zostera marina, Fucus vesiculosus and Saccharina latissima) to ameliorate seawater acidity in experimentally elevated pCO2. \n\nThis dataset includes data from experiment 1, comparison among species, described in the manuscript: Optimizing marine macrophyte capacity to locally ameliorate ocean acidification under variable light and flow regimes: Insights from an experimental approach (Ricart, A. M. et al. 2023).\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nSpecies (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndate_start (unitless)\ndate_end (unitless)\nTreatment (microatmospheres)\nLiters (liters (L))\nHours (unitless)\nDry_Weight (grams (g))\nSalinity (unitless)\nTemperature (degrees Celcius (°C))\nInitial_Dissolved_Oxygen (micromolar per liter (uM/L))\nInitial_pH (total scale)\nInitial_ALK (micromolar per kilogram (uM/kg))\nInitial_pCO2 (microatmospheres)\ndelta_DO_norm (unitless)\ndelta_DIC_norm (unitless)\ndelta_pH_norm (unitless)\ndelta_omega_norm (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_922818_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_922818_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922818_v1/index.htmlTable https://www.bco-dmo.org/dataset/922818 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922818_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922818_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_922818_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_722433.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_722433 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_722433.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_722433/ public [Open Mesocosm Oyster N2 and N2O] - Open Mesocosm Oyster 15N2 and N2O (Microbial Regulation of Greenhouse Gas N2O Emission from Intertidal Oyster Reefs) Open Mesocosm Oyster 15N2 and N2O\n\ncdm_data_type = Other\nVARIABLES:\nHours (hours)\nPhyto_15N (Phyto 15 N, percent)\nO1_15N2 (O1 15 N2, permil (/ml))\nO1_N2O (O1 N2 O, nanomole (nM))\nO2_15N2 (O2 15 N2, permil (/ml))\nO2_N2O (O2 N2 O, nanomole (nM))\nO3_15N2 (O3 15 N2, permil (/ml))\nO3_N2O (O3 N2 O, nanomole (nM))\nC1_15N2 (C1 15 N2, permil (/ml))\nC1_N2O (C1 N2 O, nanomole (nM))\nC2_15N2 (C2 15 N2, permil (/ml))\nC2_N2O (C2 N2 O, nanomole (nM))\nC3_15N2 (C3 15 N2, permil (/ml))\nC3_N2O (C3 N2 O, nanomole (nM))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_722433/index.htmlTable https://www.bco-dmo.org/dataset/722433 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_722433.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_722433&showErrors=false&email= BCO-DMO bcodmo_dataset_722433
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_705477 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_705477.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_705477/ public [Seabird and marine mammal sightings] - Seabird and marine mammal observations from the Drake Passage transits aboard RV Laurence M Gould (LMG1410, LMG1504, LMG1509) and coastal zone operations from 2014 to 2015. (Pilot Study:  Addition of Biological Sampling to Drake Passage Transits of the \"L.M. Gould\") Seabird and marine mammal observations from the Drake Passage transits aboard RV Laurence M Gould (LMG1410, LMG1504, LMG1509) and coastal zone operations from 2014 to 2015.\n\ncdm_data_type = Other\nVARIABLES:\ndeployment (unitless)\nyear (unitless)\nmonth (unitless)\nday (unitless)\nhours (hours)\nlatitude (degrees_north)\nlongitude (degrees_east)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_705477_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_705477/index.htmlTable https://www.bco-dmo.org/dataset/705477 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_705477.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_705477&showErrors=false&email= BCO-DMO bcodmo_dataset_705477
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_722560 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_722560.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_722560/ public [Sealed Oyster Aquarium 15N Tracer, 15N2 and N2O] - N2O, 15N2, 15N tissue tracer in oyster aquariums (Oyster Reef N2O Emission project) (Microbial Regulation of Greenhouse Gas N2O Emission from Intertidal Oyster Reefs) N2O, 15N2, 15N tissue tracer in oyster aquariums\n\ncdm_data_type = Other\nVARIABLES:\nTimepoint (unitless)\nTime_Days (days)\nHours (hours)\nOA1_15N2 (OA1 15 N2, permil)\nOA1_N2O (OA1 N2 O, nM)\nOA1_O2 (mg/L)\nOA1_Del15N_Digestive (OA1 Del15 N Digestive, permil)\nOA1_Del15N_Meat (OA1 Del15 N Meat, permil)\nOA2_15N2 (OA2 15 N2, permil)\nOA2_N2O (OA2 N2 O, nM)\nOA2_O2 (mg/L)\nOA2_Del15N_Digestive (OA2 Del15 N Digestive, permil)\nOA2_Del15N_Meat (OA2 Del15 N Meat, permil)\nOA3_15N2 (OA3 15 N2, permil)\nOA3_N2O (OA3 N2 O, nM)\nOA3_O2 (mg/L)\nOA3_Del15N_Digestive (OA3 Del15 N Digestive, permil)\nOA3_Del15N_Meat (OA3 Del15 N Meat, permil)\nCA1_15N2 (CA1 15 N2, permil)\nCA1_N2O (CA1 N2 O, nM)\nCA1_O2 (mg/L)\nCA2_15N2 (CA2 15 N2, permil)\nCA2_N2O (CA2 N2 O, nM)\nCA2_O2 (mg/L)\nCA3_15N2 (CA3 15 N2, permil)\nCA3_N2O (CA3 N2 O, nM)\nCA3_O2 (mg/L)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_722560/index.htmlTable https://www.bco-dmo.org/dataset/722560 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_722560.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_722560&showErrors=false&email= BCO-DMO bcodmo_dataset_722560
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918841_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918841_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918841_v1/ public [T. pseudonana starve-recover experiments: Physiological data] - Diatom (Thalassiosira pseudonana) physiological data from experiments designed to study single-cell transcriptional profiling of nutrient acquisition heterogeneity in diatoms conducted in December of 2022 (EAGER: Diatom Programmed Cell Death at Single-Cell Resolution) This dataset includes physiological data for diatom Thalassiosira pseudonana grown during experiments conducted as part of a study of \"Single-Cell transcriptional profiling of nutrient acquisition heterogeneity in diatoms.\"  See \"Related Datasets\" section for T. pseudonana gene and cell information collected as part of the same study and experiments.\n\n\nStudy description: \n\nDiatoms (Bacillariophyceae) are unicellular photosynthetic algae, accounting for about 40% of total marine primary production (equivalent to terrestrial rainforests) and critical ecological players in the contemporary ocean. Diatoms can form enormous blooms in the ocean that can be seen from space and are the base of food webs in coastal and upwelling systems, support essential fisheries, and are central to the biogeochemical cycling of important nutrients such as carbon and silicon. Over geological time, diatoms have influenced the world's climate by changing the carbon flux into the oceans. \n\nDiatoms have traditionally been studied on a population level. Growth is often measured by the total increase in biomass, and gene expression is analyzed by isolating mRNA from thousands or millions of cells. These methods generate a valuable analysis on the population's average functioning; however, they fail to show how each individual diatom cell contributes to the population phenotype. Bulk transcriptomes confound different stages and variability of cell states in heterogeneous populations. By contrast, single-cell transcriptomics measures gene expression in thousands of individual diatoms providing a quantitative and ultrahigh-resolution picture of transient cell states in population fractions enabling the reconstruction of the various phenotypic trajectories. Thus, the single-cell physiological and molecular parameters analysis allows an unsupervised assessment of cell heterogeneity within a population—a new dimension in diatoms and phytoplankton in general. \n\nIn this dataset, we examine the model diatom Thalassiosira pseudonana clonal cells grown in different nitrogen conditions, at the single cell level when grown in a light: dark cycle (12:12 h). Nitrogen is the major limiting nutrient for primary production and growth in the ocean's surface, specifically for diatoms and the food webs they support. We investigate nutrient limitation, starvation and recovery. We used droplet-based, single-cell transcriptomics to analyze ten samples in two stages.  In the first stage (\"starvation\"), six samples were collected over four days of culture as nutrient levels decreased.  In the second stage (\"recovery\"), four samples were collected over twelve hours after nutrients were replenished.\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\n... (29 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918841_v1/index.htmlTable https://www.bco-dmo.org/dataset/918841 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918841_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918841_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_918841_v1

 
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