Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_815362 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_815362.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_815362/ | public | [Carbon NEXAFS standards] - Carbon near edge X-ray absorption fine structure (NEXAFS) spectra of standard compounds (Geochemical controls on organic carbon quantity and quality in the deep subsurface) | Carbon near edge X-ray absorption fine structure (NEXAFS) spectra of standard compounds. These data contain incident energy and absorption values at that energy for a standard compounds.\n\ncdm_data_type = Other\nVARIABLES:\neV (E V, electron volts (eV))\nBSA (unitless)\nphenylalanin (unitless)\nleucine (unitless)\nagarose (unitless)\nalginate (unitless)\nlipo (unitless)\nphospholipid (unitless)\nHMWDOM (unitless)\nhumic_acid (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_815362/index.htmlTable | https://www.bco-dmo.org/dataset/815362
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_815362.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_815362&showErrors=false&email= | BCO-DMO | bcodmo_dataset_815362 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750972 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750972.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_750972/ | public | [Micronekton AA CSIA ALOHA: Amino acid specific isotopes in micronekton] - Amino acid compound specific isotope values for micronekton from R/V Kilo Moana KM1109, KM1123, KM1407, KM1418, and other cruises in the Central North Pacific, Station ALOHA, Tropical Pacific, 2007-2014 (Collaborative Research: Isotopic insights to mercury in marine food webs and how it varies with ocean biogeochemistry) | This dataset contains amino acid compound specific concentrations in micronekton collected during R/V Kilo Moana cruises around the ALOHA observatory (KM1407, KM1418, KM2011, and a few other undocumented cruises). For more information about the ALOHA observatory see: http://aco-ssds.soest.hawaii.edu/. These data were published in Gloeckler et al (2018), Supporting Information file lno10762-sup-0001-suppinfo1.xlsx\n\ncdm_data_type = Other\nVARIABLES:\nSpeciesID (Species ID, unitless)\nFamilyID (Family ID, unitless)\nSpecimenID (Specimen ID, unitless)\nSample_site (unitless)\nYear (unitless)\nMonth (unitless)\nCruiseID (Cruise ID, unitless)\nn (individuals)\nLength_mm (millimeters)\nLength_Type (length)\nTissue_Type (sample_type)\ndelta15N_ppt_v_AIR (Delta15 N Ppt V AIR, permil)\ndelta13C_ppt_v_VPDB (Delta13 C Ppt V VPDB, permil)\nC_N_mol_mol (unitless)\nAlanine (unitless)\nGlycine (unitless)\nThreonine (unitless)\nSerine (unitless)\nValine (unitless)\nLeucine (unitless)\nIsoleucine (unitless)\nProline (unitless)\nAspartic_acid (unitless)\n... (7 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_750972/index.htmlTable | https://www.bco-dmo.org/dataset/750972
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_750972.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_750972&showErrors=false&email= | BCO-DMO | bcodmo_dataset_750972 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_917239_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_917239_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_917239_v1/ | public | [Siphonophore CSIA-AA] - Compound-specific isotope analysis of amino acids (CSIA-AA) from a subset of siphophore samples collected during four research cruises on the R/V Wester Flyer in the California Current Ecosystem between 2019 and 2021 (Collaborative research: The effects of predator traits on the structure of oceanic food webs) | Samples of siphonophores (Cnidaria, Hydrozoa) were collected using blue‑water diving, midwater trawls, and remotely operated vehicles in the California Current Ecosystem, from 0 to 3,000 meters depth. Siphonophore samples were collected on four research cruises on the R/V Wester Flyer between 2019-2021. To remove potential biases associated with tissue‑specific variability in stable isotope values, the gelatinous swimming bells (nectophores) of siphonophores were sampled. This approach was possible for most specimens, except for physonect species that are extremely fragile or have nectosomes that are a small fraction of the colony length and are often not collected. For these species (e.g., Apolemia spp.), the gelatinous bracts and pieces of the siphosome, excluding gastrozooids, were used. For small individuals (Diphyes dispar, Nanomia bijuga, and Sphaeronectes koellikeri), nectophores from several colonies that were captured at the same time and sampling location were pooled to obtain an adequate mass for isotope analyses. A subset of samples was selected for compound-specific isotope analysis of amino acids. These specific taxa were selected as representatives of different depth habitats, suborders, and hypothesized diets. Bulk and compound-specific isotope analyses were performed at the University of Hawaii's Biogeochemistry Stable Isotope Facility. This dataset includes the compound-specific isotope analysis data.\n\ncdm_data_type = Other\nVARIABLES:\nCollection_Date (unitless)\nYear (unitless)\nMonth (unitless)\nGenus (unitless)\nBest_Taxonomic_ID (unitless)\nAlanine (parts per thousand)\nGlycine (parts per thousand)\nThreonine (parts per thousand)\nSerine (parts per thousand)\nValine (parts per thousand)\nLeucine (parts per thousand)\nIsoleucine (parts per thousand)\nProline (parts per thousand)\n... (21 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_917239_v1/index.htmlTable | https://www.bco-dmo.org/dataset/917239
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_917239_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_917239_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_917239_v1 | |||||
| log in | [Thalassiosira pseudonana CCMP1335 endometabolite uptake by Ruegeria pomeroyi DSS-3] - Thalassiosira pseudonana CCMP1335 endometabolite uptake by Ruegeria pomeroyi DSS-3 (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux) | The ocean's temperature increase has fundamental implications for physiological rates and processes of marine microbes. In this study, a marine diatom Thalassiosira pseudonana CCMP1335 was acclimated for three months at temperatures below (14°C), equal to (20°C), and above (28°C). Heterotrophic bacterium Ruegeria pomeroyi DSS-3 was inoculated into cultures, and transporter expression was compared between temperatures. R. pomeroyi transporter expression leveraged as a biosensor of available diatom exometabolites indicated temperature-related substitution of diatom osmolytes dimethylsulfoniopropionate (DMSP), dihydroxypropanesulfonate (DHPS), and homarine (dominating carbon transfer at lower temperatures) with glycine betaine and choline (dominating at higher temperatures). T. pseudonana endometabolome pools and biosynthetic pathway expression indicated increased availability of amino acids and glycerol-3-phosphate at higher temperatures. Overall trends across datasets supported a greater importance of organic sulfur compounds in diatom-bacterial metabolite transfer at lower temperatures and greater importance of organic nitrogen compounds at higher temperatures.\n\ncdm_data_type = Other\nVARIABLES:\nExperiment (unitless)\nSample_ID (unitless)\nMetabolomics_Workbench_Project_ID (unitless)\nMetabolomics_Workbench_Study_ID (unitless)\nMetabolomics_Workbench_Sample_ID (unitless)\nNumber (unitless)\nTemperature (degrees Celsius (°C))\nReplicate (unitless)\nCulture (unitless)\nJGI_Sample_ID (unitless)\nTime_Point_h (hours (h))\nBacteria_presence (unitless)\nGlycine_Betaine (NMR peak intensity per biovolume)\nProline (NMR peak intensity per biovolume)\nDHPS (NMR peak intensity per biovolume)\n... (13 more variables)\n | BCO-DMO | bcodmo_dataset_928203_v1 |