Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
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| log in | [16S microbiome data for artificial reef sponges and seawater] - 16S microbiome metadata collected from shallow artificial reef sponges and seawater in the Florida Keys, USA from Apr 2021 to Aug 2021 (Collaborative Research: Investigations into microbially mediated ecological diversification in sponges) | Sponges are a dominant component of coral reefs worldwide and in the Caribbean, where their biomass exceeds that of reef-building corals. For almost a quarter century, the success of sponges in the Caribbean has been linked to their filter-feeding ability. However, recent work demonstrated that coexisting sponges on Caribbean reefs host unique communities of bacteria that might allow sponges to access multiple pools of nutrients that are not available to other organisms. In this project, the investigators will test the hypothesis that ecologically dominant sponge species in the Caribbean have unique metabolic strategies that are mediated by their associations with microbes that live within the sponge body.\n\nIn this dataset, we present the 16S rRNA microbiome NCBI accession and sample collection metadata for an artificial reef experiment where sponges of 10 species were placed on this temporary reef from April to August of 2021 and sampled using VacuSIP. VacuSIP methods capture incurrent (In) and excurrent (Ex) water from each sponge specimen. Incurrent represents the bacteria that are available for the sponge to consume via filter feeding and excurrent represents the bacteria that remain once sponges have consumed their preferred taxa. Additionally, we have provided microbiome metadata for the host sponges for several of these paired In/Ex samples. See the related dataset, NCBI Bioproject PRJNA1179970, for all sequence data. Microbiome data was generated using protocols from the Earth Microbiome project and sequencing was conducted on an Illumina MiSeq at Middle Tennessee State University. The data available at NCBI represents raw sequencing data, and no quality checks or sequencing filtering has been done on the uploaded sequences.\n\ncdm_data_type = Other\nVARIABLES:\ncollection_date (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\naccession (unitless)\nsample_name (unitless)\nspecies_ab (unitless)\nsample_type (unitless)\norganism (unitless)\n... (6 more variables)\n | BCO-DMO | bcodmo_dataset_953999_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925689_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925689_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_925689_v1/ | public | [Allometric scaling of calcification for Mytilus californianus] - Allometric scaling of calcification data for Mytilus californianus from 2021-2022 (OA decoupling project) (Invertebrate calcification and behavior in seawater of decoupled carbonate chemistry) | Calcification rates of mussels spanning a range of sizes. These data were used to determine a biomass scaling function for the main incubation dataset (Incubation data for Mytilus californianus calcification).\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nAphiaID (unitless)\nLSID (unitless)\ndate_local (unitless)\nstart_time_local (unitless)\nISO_Start_DateTime_UTC (unitless)\nduration (hours (h))\nsalinity (PSU)\ntemperature (degrees Celcius (c))\ncalcification (umol hr^-1 g^-0.71592)\ntissue_mass (grams (g))\nshell_mass (grams (g))\nwet_mass (grams (g))\nTA (umol kg-1)\nph (unitless)\ndo (umol kg-1)\nci (umol kg-1)\nincubation_water_mass (kilograms (kg))\nbyssal_threads (threads hr-1)\ndelta_ta (umol kg-1)\ndelta_nh3 (umol kg-1)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_925689_v1/index.htmlTable | https://www.bco-dmo.org/dataset/925689
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_925689_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_925689_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_925689_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925714_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925714_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_925714_v1/ | public | [Control incubation data during calcification experiments] - Control incubation data during Mytilus californianus calcification experiments from 2020 to 2022 (OA decoupling project) (Invertebrate calcification and behavior in seawater of decoupled carbonate chemistry) | These data support Incubation data for Mytilus californianus calcification. These incubations did not contain mussels and demonstrate that background alkalinity changes during experimental modules were minor. These data support Incubation data for Mytilus californianus calcification. These data demonstrate that background alkalinity changes during experimental modules were minor.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (units)\nAphiaID (unitless)\nLSID (unitless)\nmodule (unitless)\ndate_local (unitless)\nstart_time_local (unitless)\nISO_start_DateTime_UTC (unitless)\nduration (hours (h))\nsalinity (PSU)\ntemperature (degrees Celcius (c))\nTA (umol kg-1)\nph (unitless)\nhco3 (umol kg-1)\nco3 (umol kg-1)\nomega (unitless)\npco2 (uatm)\ndic (umol kg-1)\ndo (umol kg-1)\nincubation_water_mass (kilograms (kg))\ndelta_ta (umol kg-1)\ndelta_nh3 (umol kg-1)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_925714_v1/index.htmlTable | https://www.bco-dmo.org/dataset/925714
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_925714_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_925714_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_925714_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925598_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925598_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_925598_v1/ | public | [Incubation data for Mytilus californianus calcification] - Incubation data for Mytilus californianus calcification from January to April 2022 (OA decoupling project) (Invertebrate calcification and behavior in seawater of decoupled carbonate chemistry) | Calcification is vital to marine organisms that produce calcium carbonate shells and skeletons. However, how calcification is impacted by ongoing environmental changes, including ocean acidification, remains incompletely understood due to complex relationships among the carbonate system variables hypothesized to drive calcification. \n\nHere, we experimentally decouple these drivers in an exploration of shell formation in adult marine mussels, Mytilus californianus. In contrast to models that focus on single parameters like calcium carbonate saturation state, our results implicate two independent factors, bicarbonate concentration and seawater pH, in governing calcification. While qualitatively similar to ideas embodied in the related substrate-inhibitor ratio (bicarbonate divided by hydrogen ion concentration), our data highlight that merging bicarbonate ion and hydrogen ion concentrations into a simple quotient obscures important features of calcification. Considering a dual-parameter framework improves mechanistic understanding of how calcifiers interact with complex and changing chemical conditions.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nAphiaID (unitless)\nLSID (unitless)\nmodule (unitless)\ndate_local (unitless)\nstart_datetime_local (unitless)\nISO_Start_DateTime_UTC (unitless)\nduration (hours)\nsalinity (PSU)\ntemperature (degrees Celcius (c))\ncalcification (umol hr^-1 g^-0.71592)\ntissue_mass (grams (g))\nshell_mass (grams (g))\nwet_mass (grams (g))\n... (24 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_925598_v1/index.htmlTable | https://www.bco-dmo.org/dataset/925598
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_925598_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_925598_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_925598_v1 | |||||
| log in | [Palau Coral Reef Experiment 2018: Biometrics] - Coral biometrics data from a heating experiment using samples collected from Nikko Bay and Rebotel Reef in Palau in the spring of 2018 (Collaborative Research: Stability, flexibility, and functionality of thermally tolerant coral symbioses) | Using samples collected from Nikko Bay and Rebotel Reef in Palau in the spring of 2018, this dataset examines coral physiology of two species of coral, Psammacora digitata and Pocillopora verrucosa, as part of a short-term heating experiment.\n\ncdm_data_type = Other\nVARIABLES:\nLocation_Name (unitless)\nlongitude (degrees_east)\nlatitude (degrees_north)\nSpecies (unitless)\nLSID (units)\nDate (unitless)\nDay (unitless)\nSymbiont (unitless)\nTreatment (Degrees Celcius (°C))\nColony (unitless)\nCell_Density (number of cells per square centimeter of coral)\nChl_a (picograms chlorophyll a per algal cell)\nHost_protein (micrograms soluble protein per square centimeter of coral skeleton)\nGross_photosynthesis (micrograms of oxygen per algal cell per hour)\nRespiration (milligrams oxygen per milligrams animal protein per hour)\nPhotosynthesis_Respiration (unitless)\n | BCO-DMO | bcodmo_dataset_855036_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_947067_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_947067_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_947067_v1/ | public | [Seasonal fatty acid profiles of marine algae and invertebrates from Sitka Sound, Alaska in 2019] - Seasonal fatty acid profiles of marine algae and invertebrates from Sitka Sound, Alaska in 2019 (CAREER: Energy fluxes and community stability in a dynamic, high-latitude kelp ecosystem) | These data include fatty acid compositions of select marine macroalgae and macroinvertebrate grazers collected in Sitka Sound, Alaska in January 2019 and July 2019. Samples were collected using SCUBA at three sites, all within 6 km of each other in Sitka Sound: Harris Island (N 57.03165, W 135.27754), Breast Island (N 57.03896, W 135.33309), and Samsing Pinnacle (N 56.98750, W 135.35718). Sampled species included six seaweeds, including three Laminarian kelps (Ochrophyta) and three red algae from the Gigartinales and Ceramiales, that are present in both seasons in these sites: Neoagarum fimbriatum, Macrocystis pyrifera, Hedophyllum nigripes, Cryptopleura ruprechtiana, Opuntiella californica, and Osmundia spectabilis. They also include six macro-invertebrates (two each of gastropods, crustaceans, echinoderms) that are present and dominant herbivores in these sites: Haliotis kamtschatkana, Tegula pulligo, Pentidotea resecata, Pugettia producta, Mesocentrotus franciscanus, and Strongylocentrotus droebachiensis. \nUnderstanding seasonal variation in fatty acid trophic biomarkers between dominant macrophyte resources and their benthic herbivores can help reveal how producers and their primary consumers may respond to future environmental change. These unique data from a high latitude kelp forest ecosystem were collected by a collaborative team of marine ecologists: Dr. Reyn Yoshioka, Dr. Aaron Galloway, Dr. Julie Schram, Dr. Kristy Kroeker, and Dr. Lauren Bell.\n\ncdm_data_type = Other\nVARIABLES:\nsampleID (unitless)\nseason (unitless)\nsite (unitless)\nYear_Month (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nspCode (unitless)\ntype (unitless)\ngenus (unitless)\nspecies (unitless)\nLSID (unitless)\nlengthDia_comment (unitless)\n... (65 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_947067_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_947067_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_947067_v1/index.htmlTable | https://www.bco-dmo.org/dataset/947067
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_947067_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_947067_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_947067_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925664_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925664_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_925664_v1/ | public | [Shell dissolution data for Mytilus californianus] - Shell dissolution data for Mytilus californianus from March to July 2020 (OA decoupling project) (Invertebrate calcification and behavior in seawater of decoupled carbonate chemistry) | This dataset supports the main incubation data. These data document shell dissolution rates for Mytilus californianus which were used to convert net calcification rates of mussels into gross calcification rates.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nAphiaID (unitless)\nLSID (unitless)\nmodule (unitless)\ndatetime_local (unitless)\nstart_time_local (unitless)\nISO_Start_DateTime_UTC (unitless)\nduration (hours)\nsalinity (PSU)\ntemperature (degrees Celcius)\nshell_mass (grams (g))\nTA (umol kg-1)\nph (unitless)\nhco3 (umol kg-1)\nco3 (umol kg-1)\nomega (unitless)\nco2 (umol kg-1)\npco2 (uatm)\ndic (umol kg-1)\nincubation_water_mass (kilograms (kg))\ndelta_ta (umol kg-1)\ndiss_rate (umol hr-1 g-1)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_925664_v1/index.htmlTable | https://www.bco-dmo.org/dataset/925664
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_925664_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_925664_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_925664_v1 |