Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log in | [Deep-DOM Metaproteome] - Sample information for metaproteomic samples taken from Station 2 from R/V Knorr KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados from March 2013 (Dissolved Organic Matter Composition in the Deep Atlantic Ocean) | This dataset includes metadata from metaproteomic samples collected at Station 2 during the R/V Knorr Cruise KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados in 2013. The accompanying total spectral counts for proteins and peptides from these samples are available on the PRoteomics IDEentifications Database (PRIDE) under Project PXD034035.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\nms_ms_sample_name (unitless)\nstation_id (unitless)\ndepth (Depth_m, m)\nlatitude_dd (degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndate_ISO (unitless)\ntime_h_m_s (unitless)\nminimum_filter_size_microns (microns)\nmaximum_filter_size_microns (microns)\ncruise_id (unitless)\nevent_number (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n | BCO-DMO | bcodmo_dataset_875622_v1 | ||||||||||||
| log in | [Peptide spectral counts (MetZyme 0.2)] - Peptides and their spectral counts from KM1128 the METZYME expedition on R/V Kilo Moana in the tropical North Pacific in 2011 (Connecting Trace Elements and Metalloenzymes Across Marine Biogeochemical Gradients (GPc03)) | Global metaproteomic dataset for KM1128 the METZYME expedition. Size fractionated samples collected by McLane pump filters (filter size 0.2 – 3.0 micron). The global proteome dataset presented here included 16951 protein identifications and 31994 unique peptide identifications compiled from 37 samples and 74 raw files (CID and HCD modes for each file) and ### total spectra.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\nstation_id (unitless)\ndepth (Depth_m, m)\nlatitude (Latitude_dd, degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndate_y_m_d (unitless)\ntime_h_m_s (unitless)\nsample_id (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nMS_MS_sample_name (unitless)\nprotein_id (unitless)\nprotein_molecular_weight_kDa (kilodalton (kDa))\nbest_protein_id_probability (unitless)\npeptide_sequence (unitless)\npeptide_start_index (unitless)\npeptide_stop_index (unitless)\nplus2H_spectra_count (unitless)\nplus3H_spectra_count (unitless)\nplus4H_spectra_count (unitless)\nBest_SEQUEST_DCn_score (unitless)\nBest_SEQUEST_XCorr_score (unitless)\nmedian_retention_time (minutes)\ntotal_precursor_intensity (unitless)\nTIC (unitless)\n... (4 more variables)\n | BCO-DMO | bcodmo_dataset_731314_v5 | ||||||||||||
| log in | [ProteOMZ Peptide Level Spectral Counts] - Total spectral counts of peptides from the R/V Falkor cruise 160115 in the Central Pacific for the ProteOMZ expedition in 2016 (The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean) | Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 109952 unique peptides, each with spectral counts associated with each of the 103 samples, for 10 million data points.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\nMS_MS_sample_name (unitless)\nprotein_id (unitless)\nprotein_molecular_weight_kDa (kDa)\nbest_protein_id_probability (unitless)\npeptide_sequence (unitless)\npeptide_start_index (unitless)\npeptide_stop_index (unitless)\nplus2H_spectra_count (count)\nplus3H_spectra_count (count)\nplus4H_spectra_count (count)\nbest_sequest_DCn_score (unitless)\nbest_sequest_Xcorr_score (unitless)\nmedian_retention_time (minutes)\ntotal_precursor_intensity (unitless)\nTIC (unitless)\nspectral_count_sum (count)\nother_protein_ids (unitless)\nstation_id (unitless)\ndepth (Depth_m, m)\nlatitude (Latitude_dd, degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndate_ymd (unitless)\ntime_hms (unitless)\nminimum_filter_size_microns (microns)\nmaximum_filter_size_microns (microns)\ncruise_id (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n | BCO-DMO | bcodmo_dataset_737596_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_737620_v3 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_737620_v3.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_737620_v3/ | public | [ProteOMZ Protein Level Spectral Counts] - Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016 (The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean) | Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 56,577 protein identifications over 102 samples, for ~6 million data points.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (untiless)\nMS_MS_sample_name (untiless)\nstation_id (unitless)\ndepth (Depth_m, m)\nlatitude (Latitude_dd, degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndate_ymd (unitless)\ntime_hms (unitless)\nminimum_filter_size_microns (microns)\nmaximum_filter_size_microns (microns)\ncruise_id (unitless)\nprotein_id (unitless)\nspectral_count_sum (count)\nmolecular_weight_kDa (kDa)\nprotein_name (unitless)\nncbi_id (taxon)\nncbi_name (verbatimIdentifiation)\nkegg_id (unitless)\nkegg_description (unitless)\nkegg_pathway (unitless)\npfams_id (unitless)\npfams_name (unitless)\nuniprot_id (unitless)\nenzyme_comm_id (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_737620_v3_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_737620_v3_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_737620_v3/index.htmlTable | https://www.bco-dmo.org/dataset/737620
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_737620_v3.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_737620_v3&showErrors=false&email= | BCO-DMO | bcodmo_dataset_737620_v3 | |||
| log in | [Total spectral count of proteins (MetZyme 0.2)] - Total spectral count of proteins from R/V Kilo Moana cruise KM1128 for the METZYME expedition in the tropical North Pacific in 2011. (Connecting Trace Elements and Metalloenzymes Across Marine Biogeochemical Gradients (GPc03)) | Global metaproteomic dataset for KM1128 the METZYME expedition. The global proteome dataset presented here included 16951 protein identifications and 31994 unique peptide identifications compiled from 37 samples and 74 raw files (CID and HCD modes for each file) and ### total spectra.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\nMS_MS_sample_name (unitless)\nstation_id (unitless)\ndepth (Depth_m, m)\nlatitude (Latitude_dd, degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndate_y_m_d (unitless)\ntime_h_m_s (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\nminimum_filter_size_microns (microns)\nmaximum_filter_size_microns (microns)\ncruise_id (unitless)\nprotein_id (unitless)\nspectral_count_sum (count)\nmolecular_weight_kDa (kilodalton (kDa))\nprotein_name (unitless)\nncbi_id (unitless)\nncbi_name (unitless)\nkegg_id (unitless)\nkegg_description (unitless)\nkegg_pathway (unitless)\npfams_id (unitless)\npfams_name (unitless)\nuniprot_id (unitless)\nenzyme_comm_id (unitless)\n | BCO-DMO | bcodmo_dataset_730722_v5 |