Accessing BCO-DMO data
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_674134 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_674134.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_674134/ | public | [Coral recruits] - Density of coral recruits in and out of MPAs in Viti Levu, Fiji from 2010 to 2012 (Killer Seaweeds project) (Killer Seaweeds: Allelopathy against Fijian Corals) | Density of coral recruits in and out of MPAs in Viti Levu, Fiji from 2010 to 2012 (Killer Seaweeds project)\n\ncdm_data_type = Other\nVARIABLES:\nstatus (unitless)\nsite (unitless)\nplot (unitless)\ntransects (count)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_674134/index.htmlTable | https://www.bco-dmo.org/dataset/674134
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_674134.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_674134&showErrors=false&email= | BCO-DMO | bcodmo_dataset_674134 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516621.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516621 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516621.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_516621/ | public | [macroalgal and coral cover] - Macroalgal and coral cover by species at 4x5 m plots, Panama, 1984-2010 (EPac Corals projects I-VII) (Ecological Effects of the 1982/83 El Nino-Associated Disturbance to Eastern Pacific Coral Reefs) | Macroalgal and coral cover surveys were conducted at the Uva Island coral reef (7o48\\u201950.43\\u201dN, 81o45\\u201932.41\\u201dW), Gulf of Chiriqu\\u00ed, Panama from 1984 to 2010.\n\ncdm_data_type = Other\nVARIABLES:\nyear (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nmonth (unitless)\nplot (unitless)\nbenthic_cover (unitless)\narea (pixels)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_516621_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_516621/index.htmlTable | https://www.bco-dmo.org/dataset/516621
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_516621.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_516621&showErrors=false&email= | BCO-DMO | bcodmo_dataset_516621 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925751_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_925751_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_925751_v1/ | public | [Macroalgal biodiversity experiment: coral growth and tissue mortality data] - Coral (Pocillopora verrucosa) growth and tissue mortality from experimental field plots in Moʻorea, French Polynesia in 2021 (Positive Effects of Coral Biodiversity on Coral Performance: Patterns, Processes, and Dynamics) | Hundreds of studies now document positive relationships between biodiversity and critical ecosystem processes, but as ecological communities worldwide shift towards new species configurations, less is known regarding how biodiversity of undesirable species will shape the functioning of ecosystems or foundation species. We manipulated macroalgal species richness in experimental field plots to test whether and how identity and diversity of competing macroalgae affected the growth, survival, and microbiome of a common coral in Moʻorea, French Polynesia. These data include coral (Pocillopora verrucosa) percent growth and tissue mortality among corals outplanted into 25 cm x 21 cm experimental plots in the back reef lagoon on the north coast of Moʻorea, French Polynesia (17°28′37″S 149°50′21″W). We varied the macroalgal community on the upper surface of each plot by outplanting monocultures holding similar masses of: (1) Sargassum pacificum, (2) Turbinaria ornata, or (3) Amansia rhodantha, as well as (4) polycultures containing all three species (12 plots per treatment; Figure 1 of Clements et al., 2024). There were also two additional treatments: (5) plots with plastic algal mimics to control for effects of shading or abrasion unrelated to the biotic properties of live seaweeds and 6) control plots where corals, but not living algae or physical mimics, were present (n = 12 plots/treatment).\n\nThis dataset includes coral (Pocillopora verrucosa) growth and tissue mortality at 9 weeks for plots with no algae (control), plastic algal mimics, monocultures of Amansia rhodantha, Turbinaria ornata, or Sargassum pacificum, and polycultures containing all three algal species.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nTreatment (unitless)\nPlot (unitless)\nColony (unitless)\nPosition (unitless)\nGrowth_percent (unitless)\nMortality_percent (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_925751_v1/index.htmlTable | https://www.bco-dmo.org/dataset/925751
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_925751_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_925751_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_925751_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_716208 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_716208.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_716208/ | public | [Mean Plot-Level Responses] - Mean plot-level responses observed in an experiment conducted at Zeke's Island National Estuarine Research Reserve where abundance of the seaweed Gracilaria vermiculophylla was manipulated to assess impact on multiple ecosystem functions ( Small Grazers, Multiple Stressors and the Proliferation of Fungal Disease in Marine Plant Ecosystems) | These data represent the time-averaged value of each variable measured monthly in each plot over the course of a 10 month experiment carried out on intertidal mud and sandflats located within the Zeke\\u2019s Island National Estuarine Research Reserve (33.95 N, 77.94 W), North Carolina, USA.\n\ncdm_data_type = Other\nVARIABLES:\nPlot (unitless)\nTrtPeg (Trt Peg, unitless (count))\nGcvr (unitless (percent))\nEpi (number per square meter (# m^-2))\nEpiRich (Epi Rich, taxa per square meter (taxa m^-2))\nDsln (grams per day (g d^-1))\nDslnFlip (Dsln Flip, grams per day (g d^-1))\nSed (centimeters per month (cm mo^-1))\nNrsy (number per square meter (# m^-2))\nNrsyRich (Nrsy Rich, taxa per square meter (taxa m^-2))\nDcmp (grams per month (g mo^-1))\nInfa_sr (number per liter (# L^-1))\nInfaRich_sr (Infa Rich Sr, taxa per liter (taxa L^-1))\nRays_sr (number per square meter per day (# m^-2 d^-1))\nRaysFlip_sr (Rays Flip Sr, number per square meter per day (# m^-2 d^-1))\nWfwl_sr (number per square meter per hour (# m^-2 h^-1))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_716208/index.htmlTable | https://www.bco-dmo.org/dataset/716208
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_716208.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_716208&showErrors=false&email= | BCO-DMO | bcodmo_dataset_716208 | |||||
| log in | [RECHARGE 2018 - 2020 Microbiome Data] - Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 (Collaborative Research: Tipping points in coral reefs and their associated microbiomes: interactive effects of herbivory, nutrient enrichment, and temperature) | This dataset contains the complete sample information for the 16S rRNA gene V4 region amplicon sequencing data associated with the NCBI SRA accession from BioProject PRJNA994532. All raw sequencing data can be found at this publicly available NCBI SRA BioProject. \n\nThe associated samples were collected from an in situ coral manipulative experiment in Moorea, French Polynesia between 2018-2020 from Acropora retusa, Porites lobata, and Pocillopora spp. Data collection was a multi-university collaborative effort between the Vega Thurber Laboratory, at Oregon State University during the time of the experiment, and the Burkepile Community Ecology Laboratory at UC Santa Barbara. The experiment, conducted on the fore reef on the north shore of the island, evaluated the interaction of consumer pressure level (termed \"Herbivory\" in the dataset and in Vompe et al., 2023) and nutrient enrichment on coral microbiome composition and host success. The experiment also captured two severe and sequential marine heatwaves in 2019 and 2020. This experiment aimed to evaluate whether managing local inputs, including water column nutrient levels and fishing regimes, interacts with heat stress to affect coral success. Coral microbiomes were sampled as these microbial communities are known to interact with host health during heat stress. The data herein correspond to the microbiomes of the sampled corals.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nDate_MonthYear (unitless)\nCoral_Code (unitless)\nHerbivory (unitless)\nNutrients (unitless)\nPlot (unitless)\nTag (unitless)\nBatch (unitless)\nRun (unitless)\nAssayType (unitless)\nAvgSpotLen (unitless)\nBases (unitless)\n... (32 more variables)\n | BCO-DMO | bcodmo_dataset_954262_v1 | ||||||||||||
| log in | [RECHARGE 2018 - 2020 Microbiome Host Bleaching and Mortality Data] - Microbiome Host Bleaching and Mortality Data for coral hosts collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 (Collaborative Research: Tipping points in coral reefs and their associated microbiomes: interactive effects of herbivory, nutrient enrichment, and temperature) | This dataset contains bleaching and mortality levels for the coral hosts associated with the 16S rRNA gene V4 region amplicon sequencing data, NCBI SRA accession from BioProject PRJNA994532. Orthorectified photomosaics were assembled from photos taken of experimental plots from an in situ coral manipulative experiment in Moorea, French Polynesia between 2018-2020. Partial bleaching and mortality was assigned from these photomosaics to Acropora retusa, Porites lobata, and Pocillopora spp. coral colonies associated with the microbiome sampling described above, whenever possible. Data collection was a multi-university collaborative effort between the Vega Thurber Laboratory, at Oregon State University during the time of the experiment, and the Burkepile Community Ecology Laboratory at UC Santa Barbara. \n\nThe experiment, conducted on the fore reef on the north shore of the island, evaluated the interaction of consumer pressure level (termed \"Herbivory\" in the dataset and in Vompe et al., 2023) and nutrient enrichment on coral microbiome composition and host bleaching and mortality. The experiment also captured two severe and sequential marine heatwaves in 2019 and 2020. This experiment aimed to evaluate whether managing local inputs, including water column nutrient levels and fishing regimes, interacts with heat stress to affect coral success. Coral colony partial bleaching and partial mortality data were collected for hosts sampled for microbiome analyses, because we aimed to correlate microbiome changes to changes in host phenotypes.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nDate (unitless)\nCoral (unitless)\nHerbivory (unitless)\nNutrients (unitless)\nPlot (unitless)\nTag (unitless)\nRun (unitless)\nColony (unitless)\npercent_bleached (percent)\npercent_dead (percent)\n | BCO-DMO | bcodmo_dataset_954197_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_641692.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_641692 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_641692.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_641692/ | public | [Rock Wall Experiment] - Rock wall manipulation experiment conducted in Bodega Bay, CA from 2010-2011 (Long-term and interactive effects of seaweed diversity and herbivory on intertidal community structure and functioning) | These data summarize results from a field experiment testing effects of\ngastropod grazer diversity and substrate heterogeneity generated by barnacles\non intertidal algal succession. The\\u00a0manipulation experiment was conducted\nin Bodega Bay, CA from 2010-2011.\n\ncdm_data_type = Other\nVARIABLES:\nlocation (dimensionless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsurvey (dimensionless)\ndate (unitless)\nmonth (mm (01 to 12))\nday (dd (01 to 31))\nyear (unitless)\nplot (dimensionless)\nblock (dimensionless)\nherb_trtmt (dimensionless)\nbarnacle_trtmt (dimensionless)\nbarn_trtmt (dimensionless)\narea (square centimeters (cm^2))\ntaxon (dimensionless)\nabundance (varies by taxon/group (see description))\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_641692_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_641692/index.htmlTable | https://www.bco-dmo.org/dataset/641692
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_641692.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_641692&showErrors=false&email= | BCO-DMO | bcodmo_dataset_641692 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669652 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669652.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_669652/ | public | [Sediment chlorophyll and phaeophytin] - Raw benthic chlorophyll and phaeophytin data from cores collected in Massachusetts from 2012-2015. (Eutrophication Effects on Sediment Metabolism and Benthic Algal-bacterial Coupling: An Application of Novel Techniques in a LTER Estuary) | Raw benthic chlorophyll and phaeophytin data from cores collected in Massachusetts from 2012-2015.\n\ncdm_data_type = Other\nVARIABLES:\nmonth (unitless)\nestuary (unitless)\nplot (unitless)\ntimepoint (unitless)\nexperiment (unitless)\nsampleID (Sample ID, unitless)\nchla (Concentration Of Chlorophyll In Sea Water, ug cm-2)\nphaeo (ug cm-2)\nlogchla (log)\nlogphaeo (log)\nchla_phaeo (Concentration Of Chlorophyll In Sea Water, ug cm-2)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_669652/index.htmlTable | https://www.bco-dmo.org/dataset/669652
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_669652.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_669652&showErrors=false&email= | BCO-DMO | bcodmo_dataset_669652 |