BCO-DMO ERDDAP
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griddap Subset tabledap Make A Graph wms files Accessible Title Summary FGDC ISO 19115 Info Background Info RSS Email Institution Dataset ID
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934706_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934706_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_934706_v1/ public [AE1913 Protein Spectral Counts] - Scaffold-derived metaproteomic exclusive and total spectral counts associated with proteins from samples taken during R/V Atlantic Explorer cruise AE1913 from the Sargasso Sea to Northeast US shelf waters in June of 2019 (Collaborative Research: Direct Characterization of Adaptive Nutrient Stress Responses in the Sargasso Sea using Protein Biomarkers and a Biogeochemical AUV) These are the Scaffold-derived metaproteomic exclusive and total spectral counts associated with proteins.  Samples were taken during R/V Atlantic Explorer cruise AE1913 in Subtropical North Atlantic, beginning at the Bermuda Atlantic Time-series Station (BATS) of the Sargasso Sea  and ending in coastal Northeast US shelf waters in June of 2019.\n\ncdm_data_type = Other\nVARIABLES:\nrow_id (unitless)\nprotein_id (unitless)\nkegg_id (unitless)\nenzyme_comm_id (unitless)\nprotein_name (unitless)\npfams_id (unitless)\nsupergroup (unitless)\nclassification (unitless)\nsample_id (unitless)\nspectral_count (unitless)\ncruise_id (unitless)\nstation_id (unitless)\ndepth (Depth_m, m)\nminimum_filter_size_microns (microns (um))\nmaximum_filter_size_microns (microns (um))\ndate_y_m_d (unitless)\nlatitude (Latitude_dd, degrees_north)\nlongitude (Longitude_dd, degrees_east)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_934706_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_934706_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_934706_v1/index.htmlTable https://www.bco-dmo.org/dataset/934706 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_934706_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_934706_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_934706_v1
log in [ProteOMZ Peptide Level Spectral Counts] - Total spectral counts of peptides from the R/V Falkor cruise 160115 in the Central Pacific for the ProteOMZ expedition in 2016 (The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean) Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 109952 unique peptides, each with spectral counts associated with each of the 103 samples, for 10 million data points.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\nMS_MS_sample_name (unitless)\nprotein_id (unitless)\nprotein_molecular_weight_kDa (kDa)\nbest_protein_id_probability (unitless)\npeptide_sequence (unitless)\npeptide_start_index (unitless)\npeptide_stop_index (unitless)\nplus2H_spectra_count (count)\nplus3H_spectra_count (count)\nplus4H_spectra_count (count)\nbest_sequest_DCn_score (unitless)\nbest_sequest_Xcorr_score (unitless)\nmedian_retention_time (minutes)\ntotal_precursor_intensity (unitless)\nTIC (unitless)\nspectral_count_sum (count)\nother_protein_ids (unitless)\nstation_id (unitless)\ndepth (Depth_m, m)\nlatitude (Latitude_dd, degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndate_ymd (unitless)\ntime_hms (unitless)\nminimum_filter_size_microns (microns)\nmaximum_filter_size_microns (microns)\ncruise_id (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n BCO-DMO bcodmo_dataset_737596_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_737620_v3 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_737620_v3.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_737620_v3/ public [ProteOMZ Protein Level Spectral Counts] - Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016 (The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean) Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 56,577 protein identifications over 102 samples, for ~6 million data points.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (untiless)\nMS_MS_sample_name (untiless)\nstation_id (unitless)\ndepth (Depth_m, m)\nlatitude (Latitude_dd, degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndate_ymd (unitless)\ntime_hms (unitless)\nminimum_filter_size_microns (microns)\nmaximum_filter_size_microns (microns)\ncruise_id (unitless)\nprotein_id (unitless)\nspectral_count_sum (count)\nmolecular_weight_kDa (kDa)\nprotein_name (unitless)\nncbi_id (taxon)\nncbi_name (verbatimIdentifiation)\nkegg_id (unitless)\nkegg_description (unitless)\nkegg_pathway (unitless)\npfams_id (unitless)\npfams_name (unitless)\nuniprot_id (unitless)\nenzyme_comm_id (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_737620_v3_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_737620_v3_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_737620_v3/index.htmlTable https://www.bco-dmo.org/dataset/737620 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_737620_v3.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_737620_v3&showErrors=false&email= BCO-DMO bcodmo_dataset_737620_v3
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768259_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768259_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768259_v1/ public [Ross Sea metaproteome peptide spectral counts] - Ross Sea metaproteome peptide spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015 (Controls of Ross Sea Algal Community Structure) A net tow metaproteome of a Phaeocystis antarctica bloom in the Ross Sea, mapped here to Phaeocystis metatranscriptomes analyzed by 2D LCMS, in units of peptide spectral counts.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\ncruise_id (unitless)\nstation_id (unitless)\nlatitude_dd (degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndepth (Depth_m, m)\ndate_local (unitless)\ntime_local (unitless)\nminimum_filter_size_microns (microns (um))\nmaximum_filter_size_microns (microns (um))\npeptide_sequence (unitless)\npeptide_start_index (unitless)\npeptide_stop_index (unitless)\nprotein_molecular_weight_kDa (kilo-Daltons (kDa))\nprotein_id (unitless)\nspectral_count_sum (unitless)\nother_protein_ids (unitless)\nbest_protein_id_probability (unitless)\nbest_sequest_DCn_score (unitless)\nbest_sequest_Xcorr_score (unitless)\nplus2H_spectra_count (unitless)\nplus3H_spectra_count (unitless)\nplus4H_spectra_count (unitless)\nmedian_retention_time (unitless)\ntotal_precursor_intensity (unitless)\nTIC (unitless)\nabsolute_units_fmol_L (femtomoles per liter (fmol/L))\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768259_v1/index.htmlTable https://www.bco-dmo.org/dataset/768259 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768259_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768259_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_768259_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768259_v2 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768259_v2.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768259_v2/ public [Ross Sea metaproteome peptide spectral counts] - Ross Sea metaproteome peptide spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015 (Controls of Ross Sea Algal Community Structure) A net tow metaproteome of a Phaeocystis antarctica bloom in the Ross Sea, mapped here to Phaeocystis metatranscriptomes analyzed by 2D LCMS, in units of peptide spectral counts.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\ncruise_id (unitless)\nstation_id (unitless)\nlatitude_dd (degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndepth (Depth_m, m)\ndate_local (unitless)\ntime_local (unitless)\nminimum_filter_size_microns (microns (um))\nmaximum_filter_size_microns (microns (um))\npeptide_sequence (unitless)\npeptide_start_index (unitless)\npeptide_stop_index (unitless)\nprotein_molecular_weight_kDa (kilo-Daltons (kDa))\nprotein_id (unitless)\nspectral_count_sum (unitless)\nother_protein_ids (unitless)\nbest_protein_id_probability (unitless)\nbest_sequest_DCn_score (unitless)\nbest_sequest_Xcorr_score (unitless)\nplus2H_spectra_count (unitless)\nplus3H_spectra_count (unitless)\nplus4H_spectra_count (unitless)\nmedian_retention_time (unitless)\ntotal_precursor_intensity (unitless)\nTIC (unitless)\nabsolute_units_fmol_L (femtomoles per liter (fmol/L))\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768259_v2/index.htmlTable https://www.bco-dmo.org/dataset/768259 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768259_v2.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768259_v2&showErrors=false&email= BCO-DMO bcodmo_dataset_768259_v2
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768237_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_768237_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_768237_v1/ public [Ross Sea metaproteome protein spectral counts] - Ross Sea metaproteome protein spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015 (Controls of Ross Sea Algal Community Structure) A net tow metaproteome of a Phaeocystis antarctica bloom in the Ross Sea, mapped here to Phaeocystis metatranscriptomes analyzed by 2D LCMS, in units of protein spectral counts.\n\ncdm_data_type = Other\nVARIABLES:\nsample_id (unitless)\ncruise_id (unitless)\nstation_id (unitless)\nlatitude_dd (degrees_north)\nlongitude (Longitude_dd, degrees_east)\ndepth (Depth_m, m)\ndate_local (unitless)\ntime_local (unitless)\nminimum_filter_size_microns (microns (um))\nmaximum_filter_size_microns (microns (um))\nprotein_id (unitless)\nprotein_name (unitless)\nspectral_count (count)\nmolecular_weight_kDa (kilo-Daltons (kDa))\nncbi_id (unitless)\nncbi_name (unitless)\nkegg_id (unitless)\nkegg_description (unitless)\nkegg_pathway (unitless)\npfams_id (unitless)\npfams_name (unitless)\nuniprot_id (unitless)\nenzyme_comm_id (unitless)\nother_identified_proteins (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_768237_v1/index.htmlTable https://www.bco-dmo.org/dataset/768237 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_768237_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_768237_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_768237_v1

 
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