BCO-DMO ERDDAP
Accessing BCO-DMO data 		log in    
Brought to you by BCO-DMO    
 
 
griddap Subset tabledap Make A Graph wms files Accessible Title Summary FGDC ISO 19115 Info Background Info RSS Email Institution Dataset ID
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750308.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750308 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750308.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_750308/ public [[DEPRECATED] AT37-13 Hard Substrata Sampling Locations] - [DEPRECATED] Locations of hard substrata collected during R/V Atlantis cruise AT37-13 in the Pacific Ocean off Costa Rica from May to June 2017 (Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea) Locations of hard substrata collected during R/V Atlantis cruise AT37-13 in the Pacific Ocean off Costa Rica from May to June 2017\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ndive_samplenumber (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsite (unitless)\ncruise (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_750308_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_750308/index.htmlTable https://www.bco-dmo.org/dataset/750308 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_750308.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_750308&showErrors=false&email= BCO-DMO bcodmo_dataset_750308
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750284.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750284 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_750284.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_750284/ public [[DEPRECATED] AT37-13 Push Core Sampling Locations] - [DEPRECATED] Locations of sediment push cores collected during R/V Atlantis cruise AT37-13 in the Pacific Ocean off Costa Rica from May to June 2017 (Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea) Locations of sediment push cores collected during R/V Atlantis cruise AT37-13 in the Pacific Ocean off Costa Rica from May to June 2017\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ndive_samplenumber (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsite (unitless)\ncruise (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_750284_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_750284/index.htmlTable https://www.bco-dmo.org/dataset/750284 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_750284.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_750284&showErrors=false&email= BCO-DMO bcodmo_dataset_750284
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_741158 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_741158.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_741158/ public [A. pisonii: egg energy] - Energy content of mangrove crab, A. pisonii, eggs from three habitats along the Florida eastern coast, 2016 (Linking Variation in Metabolic Processes as a Key to Prediction) This dataset includes calculations of the energy content of eggs of mangrove tree crabs, A. pisonii, from three habitats: mangrove, saltmarsh and mangrove collected along the eastern Florida coast in 2016.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nISO_Date (unitless)\nHabitat (unitless)\nSite (unitless)\nCW (millimeters (mm))\nGW (millimeters (mm))\nGW_CW (unitless)\nEgg_Stage (unitless)\nSample (unitless)\nPellet_W (grams)\nBomb (unitless)\nDish_Pre (grams)\nDish_Post (grams)\nTemp_rise (degrees Celcius)\nFuse (unitless)\nCorr_W (grams)\nBombW (Bomb W, unitless)\nE_Wcorr_kJ (E Wcorr K J, kiloJoules/gram (kJ/g))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_741158/index.htmlTable https://www.bco-dmo.org/dataset/741158 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_741158.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_741158&showErrors=false&email= BCO-DMO bcodmo_dataset_741158
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_741219.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_741219 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_741219.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_741219/ public [A. pisonii: egg fatty acids] - Fatty acid concentration extracted from A. pisonii eggs from three habitats along the Florida eastern coast, 2016 (Linking Variation in Metabolic Processes as a Key to Prediction) This dataset includes concentrations of fatty acids from eggs of mangrove tree crabs, A. pisonii, from three habitats: mangrove, saltmarsh and mangrove collected along the eastern Florida coast in 2016.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nHabitat (unitless)\nSite (unitless)\nYear (unitless)\nMonth (unitless)\nCW (millimeters)\nGW_CW (unitless)\nEgg_ug (micrograms)\nC14_0 (micrograms)\nC14_1 (micrograms)\nC15_0 (micrograms)\nC15_1 (micrograms)\nC16_0 (micrograms)\nC16_1 (micrograms)\nC17_0 (micrograms)\nC17_1 (micrograms)\nC18_0 (micrograms)\nC18_1n9 (micrograms)\ncLA (C LA, micrograms)\ntLA (T LA, micrograms)\nGLA (micrograms)\nALA (micrograms)\nC20_0 (micrograms)\nC20_1n9 (micrograms)\nEicoA (Eico A, micrograms)\n... (37 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_741219/index.htmlTable https://www.bco-dmo.org/dataset/741219 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_741219.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_741219&showErrors=false&email= BCO-DMO bcodmo_dataset_741219
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922718_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922718_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922718_v1/ public [Abyssal megafauna capture records] - Capture records of abyssal megafauna captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 (Collaborative Research: Assessing the relative importance of small vs large particles as sources of nutrition to abyssal communities) This dataset includes the capture records for the abyssal megafauna captured as part of this food web project. Megafauna were captured using submersibles and ROVs at Station ALOHA off Hawaii and Station M off California from 2019 to 2020. These animals were captured as representatives of their abyssal food webs for an isotopic investigation of their original particulate nutritional sources (different sized particles). Each organism was identified, measured, most weighed using a motion compensated scale, and frozen for later drying and isotope analysis. For larger organisms such as holothurians or fishes, samples of tissues were taken and often the whole animal was preserved for later confirmation of taxonomic identification.\n\ncdm_data_type = Other\nVARIABLES:\nCruise_number (unitless)\nsample_code (unitless)\nSample (unitless)\nStation (unitless)\nStation_Latitude (degrees_north)\nlongitude (Station_longitude, degrees_east)\nlocal_date (unitless)\nType_of_organism (unitless)\nspecies (unitless)\nnumber (unitless)\nTotal_Length_cm (centimeters (cm))\nStandard_Length_cm (centimeters (cm))\nPreAnal_Fin_Length_cm (centimeters (cm))\nCarapace_Length_mm (millimeters (mm))\nMass_g (grams (g))\nsex (unitless)\nTissue_fin_clip (unitless)\nTissue_whole_body (unitless)\nTissue_white_muscle (unitless)\nTissue_gut_removed (unitless)\n... (9 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922718_v1/index.htmlTable https://www.bco-dmo.org/dataset/922718 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922718_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922718_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_922718_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739973 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739973.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739973/ public [AE1812 Alkaline phosphatase] - Alkaline phosphatase activities for in situ and incubation samples from RV/Atlantic Explorer cruise AE1812 cruise transect from Bermuda to Rhode Island in May 2018. (Collaborative Research: Defining the biogeochemical drivers of diatom physiological ecology in the North Atlantic) This dataset reports alkaline phosphatase activities (APA) for 3 incubation runs and 33 in situ samples collected on RV/Atlantic Explorer cruise AE1812 in May 2018. The samples were collected between Bermuda and Rhode Island.\n\ncdm_data_type = Other\nVARIABLES:\nincubation (unitless)\nsample (unitless)\nstation (unitless)\ncast (unitless)\ndate_harvest (unitless)\nAPA_nmolP_hr_liter (APA Nmol P Hr Liter, nanomol Phosphate/hour/liter [nmol P/h/L])\nAPA_nmolP_hr_ug_chla (APA Nmol P Hr Ug Chla, nanomol Phosphate/hour/microgram chlorophyll-a [nmol P/h/µg Chl a])\nlatitude (degrees_north)\nlongitude (degrees_east)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_739973_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739973/index.htmlTable https://www.bco-dmo.org/dataset/739973 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739973.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739973&showErrors=false&email= BCO-DMO bcodmo_dataset_739973
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3885 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3885.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3885/ public [algal classes] - ChemTax based chl-a of algal groups from R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station (BATS) from 2011-2012 (Trophic BATS project) (Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea \t) ChemTax based chl-a of algal groups are reported from four cruises in the Sargasso Sea during 2011 and 2012.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (dimensionless)\ndate_gmt (unitless)\ncast (dimensionless)\ntime_gmt (HHMM)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\ndepth (m)\nsample (dimensionless)\nsize_fraction (micrometers)\ncyanobacteria (micrograms of Chl-a per liter)\nprasinophytes (micrograms of Chl-a per liter)\ncryptophytes (micrograms of Chl-a per liter)\ndiatoms (micrograms of Chl-a per liter)\npelagophytes (micrograms of Chl-a per liter)\nhaptophytes (micrograms of Chl-a per liter)\ndinoflagellates (micrograms of Chl-a per liter)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3885_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3885/index.htmlTable https://www.bco-dmo.org/dataset/3885 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3885.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3885&showErrors=false&email= BCO-DMO bcodmo_dataset_3885
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_489420.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_489420 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_489420.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_489420/ public [ammonium removal by seaweeds] - Macroalgal contribution to NH4+ removal in tidepools from Cape Flattery, WA from 2010-2011 (Regenerated Nitrogen project) (The Role of Regenerated Nitrogen for Rocky Shore Productivity) We evaluated the role of mussels by adding 15N-labeled NH4+ to an assemblage\nof tidepools where they were either present at natural abundance levels, or\nabsent through manual removal. \\u00a0The role of phototrophs was separately\nexamined by conducting these experiments both during the day and at night.\n\\u00a0The tidal height of pools varied between 1.2 to 1.5 m above Mean Lower\nLow Water (MLLW). Tidepools were thus isolated from each other as well as the\nnearshore environment during the low tide period when experiments were\nconducted. Each experiment included 4 to 5 mussel removal (MR) tidepools\n(since 2002) and 4 to 5 mussel control (MC) tidepools with natural mussel\ndensities. \\u00a0In June 2010, we performed daytime NH4+ tracer experiments\nand in August 2010 nighttime experiments using the same tidepools. The\nfollowing year (July 2011) these experiments were repeated with the addition\nof bottle incubations (see below) to evaluate the effects of suspended\ntidepool components and extended sampling for 6 days after the initial 15N\naddition to test for long-term retention of NH4+. \\u00a0During the 2011\nexperiments, unforeseen rain reduced the salinity in some pools by up to 51%,\nand we have attempted to correct for the expected dilution of NH4+ in our\ntidepool rate calculations.\n \nBecause isotope enrichment levels were relatively low, we used the\nconventional delta notation instead of atom% to describe variations in 15N\nenrichment (where delta-15NH4+ = {(15N:14N sample \\u00f7 15N:14N standard)\n-1}\\u00d71000\\u2030, where the standard is atmospheric N2. \\u00a0Tracer\nlabeled ammonium chloride (15NH4Cl) was added to the pools to approximate a\n1000\\u2030 enrichment in 2010 (doubling the 15N-NH4+ concentration) and a\n2000\\u2030 enrichment in 2011(tripling the 15N-NH4+ concentration). 15N\nnatural abundance is only 0.365% and these tracer additions thus had a\nnegligible effect on the overall NH4+ concentrations increasing them by only\n~0.4% and ~0.8%, respectively. Tidepool volumes were estimated\nspectrophotometrically using varying concentrations of food dye (Pfister\n1995). Together with estimates of NH4+ concentration (from 2009 data), we\nestimated the tracer addition required to achieve the targeted 15N\nenrichments. However, the actual initial enrichments varied substantially,\n684.4 - 2406.4\\u2030 in 2010 and 781.4 - 3880.2\\u2030 in 2011, likely due to\nerror in tidepool volume estimation and natural variations in initial NH4+\nconcentrations. Fortunately, we sampled immediately following each tracer\naddition allowing for the determination of the true initial 15N enrichment.\n\\u00a0\n \nPrior to tracer addition at ebb tide, 100 mL of tidepool water was syringe-\nfiltered (Whatman GF/F) into separate HDPE bottles for natural abundance\n15NH4+ and concentration determination. \\u00a0To each pool, tracer 15NH4+ was\nthen added and distributed by stirring with a stick. Water samples were\nimmediately collected for measuring initial 15N enrichment and subsequently at\n2, 4, and 6 hour intervals to determine isotope and concentration time\ncourses. All water samples were frozen until analysis. Tidepool oxygen, pH,\nand temperature (Hach HQ4D) were also collected at ~ 2 h intervals throughout\nthe experiment.\n \nIn 2011 we also assessed the contribution of the suspended microbial community\nto NH4+ cycling by enclosing tidepool water in a 250 mL transparent\npolycarbonate incubation bottle. Following tracer addition, the bottle was\nfilled, then left to float in the tidepool for the duration of the experiment.\nSamples from bottles were filtered as described both immediately after\ncontainment and at the end of the experiment (~6 h later).\n \nWe assessed macroalgal contribution to NH4+ removal by transplanting two\ntidepool-dwelling algae species. \\u00a0Prionitis sternbergii were sampled 2\nweeks prior to the experiment for baseline natural abundance 15N values and\ntransplanted into the pools with Z-Spar Epoxy (Pfister 2007). On the day of\nthe experiment, the red-alga, Corallina vancouveriensis from a single source\npatch, was also sampled for 15N natural abundance, inserted into pieces of\nStyrofoam, and floated in each pool.\n \nAt the end of each experiment (~6 h sampling point), we sampled tidepool\nparticulate organic material (POM) by filtering through combusted GF/F filters\nuntil they clogged (~ 600 mL), comparing these samples with POM similarly\nsampled from the immediate nearshore. \\u00a0Floating Corallina spp. samples\nwere collected into clean Eppendorf tubes, and similar sized pieces of\nPrionitis spp. were collected from each pool into clean foil packets.\\u00a0  \n We evaluated the extent of longer-term 15N tracer retention in 2011 by\nsampling tidepool water, POM and transplanted Prionitis 1, 3, and 6 days\nfollowing tracer addition. We sampled at ebb tide and at again at slack water\njust prior to high tide on the first day after tracer addition (that is, 24 h\nlater) and at slack water prior to high tide on Day 3 and 6.\\u00a0\n \nRelevant References:\n \n2014\\. Pather, S., C. A. Pfister, M. Altabet, D. M. Post. Ammonium cycling in\nthe rocky intertidal: remineralization, removal and retention. Limnology and\nOceanography\n59:361-372.\\u00a0[http://aslo.org/lo/toc/vol_59/issue_2/0361.htm](\\\\http://aslo.org/lo/toc/vol_59/issue_2/0361.html\\\\)\n \nDOI for this dataset:\\u00a0The role of regenerated nitrogen for rocky shore\nproductivity, Cape Flattery, Washington, 2010 &\n2011.\\u00a0Handle:\\u00a0[http://hdl.handle.net/1912/6420](\\\\http://hdl.handle.net/1912/6420\\\\).\\u00a0DOI:10.1575/1912/6420\n \nRelated Datasets:  \n[filter tracer content](\\\\https://www.bco-dmo.org/dataset/489283\\\\)  \n[natural abundance N and C filter content](\\\\http://www.bco-\ndmo.org/dataset/489310\\\\)  \n[tidepool ammonium and mussels](\\\\https://www.bco-dmo.org/dataset/488860\\\\)  \n[tidepool incubation ammonium](\\\\https://www.bco-dmo.org/dataset/489085\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nsite (unitless)\n... (10 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_489420_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_489420/index.htmlTable https://www.bco-dmo.org/dataset/489420 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_489420.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_489420&showErrors=false&email= BCO-DMO bcodmo_dataset_489420
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3670 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3670.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3670/ public [biogeochem_microbes] - Algae, bacteria, DOC, inorganic and organic nutrients collected from the Richard B Gump Research Station at Moorea LTER from 2010-2011 (MCR LTER and Coral DOM projects) (Moorea Coral Reef Long-Term Ecological Research site) This dataset contains experimental and survey biogeochemical and microbial data from samples collected at the Moorea Coral Reef LTER site (French Polynesia). Goals of the study were to investigate how benthic primary producers directly affect seawater chemistry (DO and DOC) and to examine impacts of released DOC on reef bacterioplankton growth and respiration. Rates of photosynthesis, respiration, and DOC relsease were assessed for several benthic reef organisms.\n\ncdm_data_type = Other\nVARIABLES:\ncruiseid (dimensionless)\nyear (unitless)\ncampaign (dimensionless)\nsample (dimensionless)\nmonth_gmt (mm (01 to 12))\nday_gmt (dd (01 to 31))\ntime_gmt (HHMM)\ndate_local (mm/dd/yy)\ntime_local (HHMM)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_bottom (Depth, meters)\ndepth (m)\nbac_plank (10^8 cells per liter)\nphytopl_tot (cells per milliliter)\nprochloro (cells per milliliter)\nsynecho (cells per milliliter)\nDOC (micromolar (uM))\nTDN (micromolar (uM))\nNO3 (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))\nNO2 (Mole Concentration Of Nitrite In Sea Water, micromolar (uM))\nNO3_NO2 (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))\nPO4 (Mass Concentration Of Phosphate In Sea Water, micromolar (uM))\n... (16 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3670_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3670/index.htmlTable https://www.bco-dmo.org/dataset/3670 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3670.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3670&showErrors=false&email= BCO-DMO bcodmo_dataset_3670
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782025 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782025.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_782025/ public [Chemistry and cell counts] - Chemistry and cell counts of formation fluids from North Pond, western flank of the Mid-Atlantic Ridge, from 2012-2014 (Collaborative Research: Characterization of Microbial Transformations in Basement Fluids, from Genes to Geochemical Cycling) Chemistry and cell counts of formation fluids from North Pond\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nbioproject_id (unitless)\ncollection_date (unitless)\ndescription (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_minimum (Depth, meters)\ndepth_maximum (Depth, meters)\nCell_counts (cells per mililiter (cells/mL))\nconfidence_level_95pcnt (cells per mililiter (cells/mL))\nO2 (micromole per Liter (umol/L))\nNO3 (Mole Concentration Of Nitrate In Sea Water, micromole per Liter (umol/L))\nSi (Mass Concentration Of Silicate In Sea Water, micromole per Liter (umol/L))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_782025_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_782025/index.htmlTable https://www.bco-dmo.org/dataset/782025 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_782025.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_782025&showErrors=false&email= BCO-DMO bcodmo_dataset_782025
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922789_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922789_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922789_v1/ public [Compound specific isotope data] - Compound specific isotope data of amino acids for abyssal macrofauna, megafauna, sediments, sediment traps, and in situ filtered particles at Station ALOHA off Hawaii and Station M off California from 2019 to 2020 (Collaborative Research: Assessing the relative importance of small vs large particles as sources of nutrition to abyssal communities) This dataset includes compound specific isotope data of amino acids for abyssal macrofauna, megafauna, sediments, sediment traps, and in situ filtered particles from off California (Station M) and Hawaii (Station ALOHA) collected from 2019 to 2020. These data were collected as part of a food web project to evaluate the relative importance of small and large particle types to abyssal communities.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nCruise (unitless)\nDate_initial (unitless)\nDate_final (unitless)\nSite (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nType (unitless)\nSpecies (unitless)\nType_filter (unitless)\ndepth (m)\nd15N (‰, vs AIR)\nd13C (‰, vs VPDB)\nALA_N (‰, vs AIR)\nGLY_N (‰, vs AIR)\nTHR_N (‰, vs AIR)\nSER_N (‰, vs AIR)\nVAL_N (‰, vs AIR)\nLEU_N (‰, vs AIR)\nILE_N (‰, vs AIR)\nPRO_N (‰, vs AIR)\nASX_N (‰, vs AIR)\nGLX_N (‰, vs AIR)\n... (42 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922789_v1/index.htmlTable https://www.bco-dmo.org/dataset/922789 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922789_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922789_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_922789_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762511 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762511.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762511/ public [Coral colony sequece accessions: Hidden resilience to recurrent bleaching] - RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa) RNA sequence accession numbers for coral colonies that displayed a strong bleaching phenotype at Ofu Island, American Samoa between 2015 and 2016. This dataset includes accession numbers for 36 RNAseq libraries housed at The National Center for Biotechnology Information (NCBI).\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ncolony (unitless)\nspecies (uniless)\ndate (unitless)\nyear (unitless)\nmonth (unitless)\nbleaching_status (percent)\nAccession (unitless)\nAccession_link (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762511/index.htmlTable https://www.bco-dmo.org/dataset/762511 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762511.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762511&showErrors=false&email= BCO-DMO bcodmo_dataset_762511
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_762497.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_762497/ public [Coral colony sequence accessions: The genomics of recovery from coral bleaching] - Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015. (Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa) Coral colony genetic sequence accessions for samples collected from the lagoon environment of Ofu Island in the National Park of American Samoa between 2011 and 2015.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ndate (unitless)\ncolony (unitless)\nbleaching_status (percent (%))\naccession (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nspecies (unitless)\naccession_link (untiless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_762497_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_762497/index.htmlTable https://www.bco-dmo.org/dataset/762497 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_762497.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_762497&showErrors=false&email= BCO-DMO bcodmo_dataset_762497
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_794342.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_794342 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_794342.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_794342/ public [Coral iCA Activity] - Internal carbonic anhydrase activity in three species of coral collected from the Florida Keys in August 2013 (Ocean Acidification: Coral Inorganic Carbon Processing in Response to Ocean Acidification) Internal carbonic anhydrase activity in three species of coral collected from the Florida Keys in August 2013.\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nSample (unitless)\nkif (/s)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntime (Collection Date, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_794342_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_794342/index.htmlTable https://www.bco-dmo.org/dataset/794342 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_794342.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_794342&showErrors=false&email= BCO-DMO bcodmo_dataset_794342
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_927890_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_927890_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_927890_v1/ public [Coral trait variation] - Growth and chlorophyll density of individual fragments of the coral Porites divaricata measured during a reciprocal transplant experiment conducted at three sites in Turneffe Atoll, Belize from February to July 2022 (OCE-PRF: Drivers of phenotypic diversity and adaptation in asexually propagating coral populations) We sought to investigate the role of genetic, intra-clonal, and environmental variation in driving variation in fitness-related traits in the Caribbean thin finger coral, Porites divaricata (Taxonomy ID: 262287). We conducted a reciprocal transplant experiment whereby fragments from individual coral colonies of known genetic background were transplanted to three sites from February to July 2022. These sites included two mangrove sites and one reef site at Calabash Caye, Turneffe Atoll, Belize. Prior to and post-transplanting, fragments were measured to determine growth rate over this time. Coral fragments were also photographed to determine red channel intensity, which serves as a proxy for chlorophyll density. \n\nThis dataset contains the measures of these two coral traits (coral fragment growth and chlorophyll density (red channel intensity)) for each coral individual and also contains metadata about the genotype, origin site, transplanted site, rope at transplanted site, and age. \n\nA related dataset contains environmental information about each transplanted site over this time period, based on loggers that recorded temperature and light levels. Data were collected by scientists at the University of Texas at Austin and the University of Belize.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\norigin (unitless)\nclone (unitless)\nsubclone (unitless)\nlongitude (Sublcone_longitude, degrees_east)\nsubclone_latitude (degrees_north)\ntrans_site (unitless)\nrope (unitless)\nloc_grtn (unitless)\nage2 (years)\ngrtn (unitless)\nloc (unitless)\n... (6 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_927890_v1/index.htmlTable https://www.bco-dmo.org/dataset/927890 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_927890_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_927890_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_927890_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_780191 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_780191.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_780191/ public [CTD Biogenic Silica] - Biogenic silica concentrations collected from CTD casts during RVIB Nathaniel B. Palmer cruise in the Ross Sea, Southern Ocean from 2017-2018 (Collaborative Research:  Cobalamin and Iron Co-Limitation Of Phytoplankton Species  in Terra Nova Bay) Biogenic silica concentrations collected from CTD casts during RVIB Nathaniel B. Palmer cruise in the Ross Sea, Southern Ocean from 2017-2018\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nNiskin (unitless)\nSample (unitless)\nFltr_Vol (liter (l))\nBsi (micromole (µM))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_780191_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_780191/index.htmlTable https://www.bco-dmo.org/dataset/780191 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_780191.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_780191&showErrors=false&email= BCO-DMO bcodmo_dataset_780191
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_711958 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_711958.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_711958/ public [d15N - HPLC Method Glu and Phe 15N values] - N isotopic composition of Phenylalanine and Glutamic Acid from a number of organisms, demonstrating new HPLC protocol for precise isotopic measurements (The Use of Nitrogen Isotopes of Amino Acids To Understand Marine Sedimentary 15N Records) N isotopic composition of Phenylalanine and Glutamic Acid from a number of organisms, demonstrating new HPLC protocol for precise isotopic measurements.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nGlu_d15N_GCC (Glu D15 N GCC, per mil)\nGlu_d15N_GCC_stdev (Glu D15 N GCC Stdev, per mil)\nPhe_d15N_GCC (Phe D15 N GCC, per mil)\nPhe_d15N_GCC_stdev (Phe D15 N GCC Stdev, per mil)\nTP_GCC (unitless)\nGlu_d15N_HPLC (Glu D15 N HPLC, per mil)\nGlu_d15N_HPLC_stdev (Glu D15 N HPLC Stdev, per mil)\nPhe_d15N_HPLC (Phe D15 N HPLC, per mil)\nPhe_d15N_HPLC_stdev (Phe D15 N HPLC Stdev, per mil)\nTP_HPLC (unitless)\nd15N_EA (D15 N EA, permil (‰))\nd15N_EA_stdev (D15 N EA Stdev, permil (‰))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_711958/index.htmlTable https://www.bco-dmo.org/dataset/711958 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_711958.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_711958&showErrors=false&email= BCO-DMO bcodmo_dataset_711958
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_778021 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_778021.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_778021/ public [dis_15N2_gas] - Analysis of dissolved 15N2 gas standards by Membrane Inlet Mass Spectrometry (EAGER:  Collaborative Research:  Detection limit in marine nitrogen fixation measurements - Constraints of rates from the mesopelagic ocean) In order to verify that measurements of the 15N2 atom% of dissolved N2 gas samples effectuated by Membrane Inlet Mass Spectrometry are accurate, we developed a specific protocol to prepare dissolved 15N2 gas standards. We detail the protocol herein, and report representative MIMS measurements of the prepared standards.\n\ncdm_data_type = Other\nVARIABLES:\nBottle_vol (mililiters (mL))\nSample (unitless)\nInjection_15N2 (Injection 15 N2, mililiters (mL))\nExpected_15N_At_pcnt (Expected 15 N At Pcnt, unitless)\nTime_of_analysis (unitless)\nm_z_28 (unitless)\nm_z_29 (unitless)\nm_z_30 (unitless)\nm_z_32 (unitless)\nm_z_40 (unitless)\nN2_Ar (unitless)\nratio_28_29 (unitless)\nratio_28_30 (unitless)\nAt_15N_pcnt (At 15 N Pcnt, unitless)\nAt_15N_pcnt_avg (At 15 N Pcnt Avg, unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_778021/index.htmlTable https://www.bco-dmo.org/dataset/778021 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_778021.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_778021&showErrors=false&email= BCO-DMO bcodmo_dataset_778021
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924650_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_924650_v1/ public [Edmunds et al. 2020 ICES: pCO2 flume - Coral area] - Coral area from a study of year-long effects of high pCO2 on the community structure of a tropical fore reef assembled in outdoor flumes in Moorea, French Polynesia from 2017 to 2018 (RUI: Ocean Acidification- Category 1- The effects of ocean acidification on the organismic biology and community ecology of corals, calcified algae, and coral reefs) This coral calcification dataset includes the areas of corals as they changed over a year-long experiment. Flume physical and chemical conditions are provided as a supplemental file. These data are part of a study of year-long effects of high pCO2 on the community structure of a tropical fore reef assembled in outdoor flumes in Moorea, French Polynesia from 2017 to 2018.  \n\nThese coral calcification data support publication (Edmunds et al., 2020; doi:10.1093/icesjms/fsaa015) with the following abstract:\n\nIn this study, fore reef coral communities were exposed to high pCO2 for a year to explore the relationship between net accretion (Gnet) and community structure (planar area growth). Coral reef communities simulating the fore reef at 17-m depth on Mo'orea, French Polynesia, were assembled in three outdoor flumes (each 500 l) that were maintained at ambient (396 matm), 782 matm, and 1434 matm pCO2, supplied with seawater at 300 l h 1, and exposed to light simulating 17-m depth. The communities were constructed using corals from the fore reef, and the responses of massive Porites spp., Acropora spp., and Pocillopora verrucosa were assessed through monthly measurements of Gnet and planar area. High pCO2 depressed Gnet but did not affect colony area by taxon, although the areas of Acropora spp. and P. verrucosa summed to cause multivariate community structure to differ among treatments. These results suggest that skeletal plasticity modulates the effects of reduced Gnet at high pCO2 on planar growth, at least over a year. The low sensitivity of the planar growth of fore reef corals to the effects of ocean acidification.\n\ncdm_data_type = Other\nVARIABLES:\nFlume (unitless)\nYear_Month (unitless)\nSample (unitless)\nType (unitless)\nSpecies (unitless)\npercent_area (percent (%))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_924650_v1/index.htmlTable https://www.bco-dmo.org/dataset/924650 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_924650_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_924650_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_924650_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924603_v1 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_924603_v1/ public [Edmunds et al. 2020 ICES: pCO2 flume - Coral weight] - Coral weight from a study of year-long effects of high pCO2 on the community structure of a tropical fore reef assembled in outdoor flumes in Moorea, French Polynesia from 2017 to 2018 (RUI: Ocean Acidification- Category 1- The effects of ocean acidification on the organismic biology and community ecology of corals, calcified algae, and coral reefs) This coral calcification dataset includes the weight of the corals as used to report net changes in mass (Gnet). Flume physical and chemical conditions are provided as a supplemental file.  These data are part of a study of year-long effects of high pCO2 on the community structure of a tropical fore reef assembled in outdoor flumes in Moorea, French Polynesia from 2017 to 2018.  \n\nThese coral calcification data support publication (Edmunds et al., 2020; doi:10.1093/icesjms/fsaa015) with the following abstract:\n\nIn this study, fore reef coral communities were exposed to high pCO2 for a year to explore the relationship between net accretion (Gnet) and community structure (planar area growth). Coral reef communities simulating the fore reef at 17-m depth on Mo'orea, French Polynesia, were assembled in three outdoor flumes (each 500 l) that were maintained at ambient (396 matm), 782 matm, and 1434 matm pCO2, supplied with seawater at 300 l h 1, and exposed to light simulating 17-m depth. The communities were constructed using corals from the fore reef, and the responses of massive Porites spp., Acropora spp., and Pocillopora verrucosa were assessed through monthly measurements of Gnet and planar area. High pCO2 depressed Gnet but did not affect colony area by taxon, although the areas of Acropora spp. and P. verrucosa summed to cause multivariate community structure to differ among treatments. These results suggest that skeletal plasticity modulates the effects of reduced Gnet at high pCO2 on planar growth, at least over a year. The low sensitivity of the planar growth of fore reef corals to the effects of ocean acidification.\n\ncdm_data_type = Other\nVARIABLES:\nFlume (unitless)\nYear_Month (unitless)\nSample (unitless)\nType (unitless)\nFunctional_group (unitless)\nSpecies (unitless)\nLTER_Site (unitless)\nWeight (grams (g))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_924603_v1/index.htmlTable https://www.bco-dmo.org/dataset/924603 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_924603_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_924603_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_924603_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_769601.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_769601 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_769601.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_769601/ public [EN614 HPLC Pigments] - Phytoplankton diagnostic pigments from HPLC from samples collected on R/V Endeavor cruise EN614 in the tropical North Atlantic during May 2018 (Collaborative Research: Impact of the Amazon River Plume on Nitrogen Availability and Planktonic Food Web Dynamics in the Western Tropical North Atlantic) Phytoplankton diagnostic pigments from HPLC from samples collected on R/V Endeavor cruise EN614 in the tropical North Atlantic during May 2018. Note: these data are also available through NASA's SeaBASS repository at https://seabass.gsfc.nasa.gov/archive/COLUMBIA_U/subramaniam/LAMONT_ATL/may18atl/archive\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nvolfilt (liters (L))\nStation (unitless)\ndepth (m)\nYear (meters (m))\nmonth (unitless)\nDay (unitless)\nsdy (unitless)\ntime2 (Time, unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlongitude (degrees_east)\nlatitude (degrees_north)\nTot_Chl_a (Concentration Of Chlorophyll In Sea Water, milligrams per cubic meter (mg/m^3))\nTot_Chl_b (milligrams per cubic meter (mg/m^3))\nTot_Chl_c (milligrams per cubic meter (mg/m^3))\nAlpha_beta_Car (milligrams per cubic meter (mg/m^3))\nBut_fuco (milligrams per cubic meter (mg/m^3))\nHex_fuco (milligrams per cubic meter (mg/m^3))\nAllo (milligrams per cubic meter (mg/m^3))\nDiadino (milligrams per cubic meter (mg/m^3))\nDiato (milligrams per cubic meter (mg/m^3))\nFuco (milligrams per cubic meter (mg/m^3))\nPerid (milligrams per cubic meter (mg/m^3))\nZea (milligrams per cubic meter (mg/m^3))\nMV_Chl_a (Concentration Of Chlorophyll In Sea Water, milligrams per cubic meter (mg/m^3))\n... (28 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_769601_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_769601/index.htmlTable https://www.bco-dmo.org/dataset/769601 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_769601.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_769601&showErrors=false&email= BCO-DMO bcodmo_dataset_769601
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_728099 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_728099.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_728099/ public [Epibenthic community percent cover] - Epibenthic community percent cover in Aleutian Island kelp forests, June 2016 and July 2017 (Kelp Forest Ecosystem Engineer Loss project) (Collaborative Research: Changes in ecosystem production and benthic biodiversity following the widespread loss of an ecosystem engineer) Epibenthic community percent cover in Aleutian Island kelp forests, June 2016 and July 2017\n\ncdm_data_type = Other\nVARIABLES:\nIsland (unitless)\nHabitat (unitless)\nRegion (unitless)\nYear (unitless)\nSite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nQuad (unitless)\nsample (unitless)\nHoldfast_cover (unitless)\nSuspension_Feeders_cover (unitless)\nEncrusting_Corralline_cover (unitless)\nClathromorphum_cover (unitless)\nBareRock_cover (Bare Rock Cover, unitless)\nCodium_cover (unitless)\nOther_cover (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_728099_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_728099/index.htmlTable https://www.bco-dmo.org/dataset/728099 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_728099.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_728099&showErrors=false&email= BCO-DMO bcodmo_dataset_728099
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_948746_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_948746_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_948746_v1/ public [ETNP 2012 McClane Pump POM] - Suspended Organic Particle concentration and stable C and N isotopes (collected with McClane Pumps and GF/F filters) from the Eastern Tropical North Pacific on the R/V Thompson cruise TN278 in April 2012 (The role of cryptic nutrient cycling within sinking particles on trace element transport in oxygen minimum zones) Suspended organic carbon and nitrogen concentrations and stable isotopes were obtained on the R/V Thompson cruise TN278 at St P2 (16.5 N 107.1 W; known as BB2 on this cruise) and at St P1 (20.1 N 106.0 W; known as BB1 on this cruise) in the Eastern Tropical North Pacific Oxygen Deficient Zone in April 2012. The Oxygen Deficient Zone extended from 105 m to 820 m at St P2 and from 95 to 800 m at St P1. Water was filtered onto 142 mm pre-combusted GF/F filters in situ using McClane pumps (on average ~300-500 L) in a depth profile. Two 21 mm diameter punches were obtained from each 142 mm filter and used for organic matter analysis. Sample punches were wafted with HCl overnight to remove carbonate and sent to the UC Davis Stable Isotope Facility (Davis, CA) for C and N analysis. \n\nThe purpose of this sampling was to quantify suspended organic matter in an offshore Oxygen Deficient Zone. \n\nJacquelyn Neibauer and Rick Keil of the University of Washington deployed the McClane pumps on the cruise. Jacquelyn Neibauer was in charge of prepping the samples. Megan Duffy and Clara Fuchsman of the University of Washington analyzed the data.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nSt (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDate (unitless)\ndepth (m)\nNitrogen (micromolar (uM))\nCarbon (micromolar (uM))\nd15N_Air (permil (0/00))\nd13C_VPDB (permil (0/00))\nC_to_N (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_948746_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_948746_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_948746_v1/index.htmlTable https://www.bco-dmo.org/dataset/948746 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_948746_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_948746_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_948746_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3693 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3693.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3693/ public [event logs] - Log of sampling events from R/V Point Sur cruises PS1009 and PS1103 in the Santa Barbara Channel from 2010-2011 (SBDOM project, SBC LTER project) (Mechanisms controlling the production and fate of DOM during diatom blooms) Log of events recorded during SBDOM deployments PS1009 (also known as SBDOM10) and PS1103 (SBDOM11).\n\ncdm_data_type = Other\nVARIABLES:\ncruise_name (text)\ncruise_id (text)\nyear (unitless)\nevent (unitless)\ndate_gmt (mm/dd/yy)\nmonth_gmt (mm)\nday_gmt (dd)\ntime_gmt (HHMM)\ndate_local (mm/dd/yy)\ntime_local (HHMM)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsta_id (text)\ndepth (m)\nactivity (text)\nsample (dimensionless)\nsample_type (text)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\ncomment (text)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3693_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3693/index.htmlTable https://www.bco-dmo.org/dataset/3693 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3693.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3693&showErrors=false&email= BCO-DMO bcodmo_dataset_3693
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_517839.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_517839 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_517839.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_517839/ public [Exp and Survey Biogeochem and Microbial data] - Experimental and survey biogeochemical and microbial data from R/V Point Sur cruises PS1009 and PS1103 in the Santa Barbara Channel from 2010-2011 (SBDOM project, SBC LTER project) (Mechanisms controlling the production and fate of DOM during diatom blooms) The dataset includes experimental and survey biogeochemical and microbial data. Samples were collected during research cruises in April 2010 and May 2011 in the Santa Barbara Channel.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_name (text)\ncruise_id (text)\nactivity (text)\nevent (unitless)\nsta_id (alphanumeric)\ncast_type (text)\ncast (alphanumeric)\ndepth_bottom (Depth, meters (m))\ndate_local (unitless)\ntime_local (unitless)\ndecimal_year_local (decimal year)\ndate_gmt (unitless)\ntime_gmt (unitless)\ndecimal_year_gmt (decimal year)\nlatitude (degrees_north)\nlongitude (degrees_east)\nISO_DateTime_Local (ISO Date Time Local, unitless)\ndepth (m)\ndepth_target (Depth, meters (m))\nbottle (integer or text)\nsample (integer)\ncollection_bot_ID (integer)\nphosphate (Mass Concentration Of Phosphate In Sea Water, micromoles per Liter (umol/L))\nsilicate (Mass Concentration Of Silicate In Sea Water, micromolar (uM))\nNO2 (Mole Concentration Of Nitrite In Sea Water, micromoles per Liter (umol/L))\nNO3_NO2 (Mole Concentration Of Nitrate In Sea Water, micromoles per Liter (umol/L))\n... (46 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_517839_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_517839/index.htmlTable https://www.bco-dmo.org/dataset/517839 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_517839.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_517839&showErrors=false&email= BCO-DMO bcodmo_dataset_517839
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_757485 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_757485.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_757485/ public [Fe-Labeling Expt: E.coli and phage T4 or T5] - Iron concentrations of phage from experiments of iron-labelled E. coli infected with T4 and T5 bacteriophage, 2018 and 2019. (EAGER: Iron-Virus Interactions in the Ocean) This data was collected as part of a study investigating the source of iron to bacteriophage (phage for short, or viruses that infect and kill bacteria) progeny. Evidence from a phage that infects E. coli shows iron incorporated into the tail fiber structure. This study aims at identifying whether the source of the iron is environmental or bacterially derived. E. coli bacterial cultures were grown in minimal media spiked with 10 \\u00b5M 57FeSO4 then infected with phage T4 or T5. The phages were purified by methods of centrifugation, filtration, density-dependent ultracentrifugation, and dialyzing. The resulting phage fractions were quantified by SYBR epifluorescence microscopy and metal concentrations were measured on an ELEMENT XR ICP-MS.\n\ncdm_data_type = Other\nVARIABLES:\ndate_utc (unitless)\nexpt_round (unitless)\nsample (unitless)\ndescription (unitless)\nFe_56_nM (Fe 56 N M, nanoMolar)\nFe_57_nM (Fe 57 N M, nanoMolar)\nvolume (liters)\nFe_56_nmol (nanomoles)\nFe_57_nmol (nanomoles)\nCu_63_nmol (nanomoles)\nZn_66_nmol (nanomoles)\nNi_60_nmol (nanomoles)\nPb_208_nmol (nanomoles)\nbact_cells_ml (cells/milliliter)\nphage_VPL_ml (virus-like particles/milliliter)\nFe_57_atoms_per_phage (atoms)\nnotes_expt (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_757485/index.htmlTable https://www.bco-dmo.org/dataset/757485 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_757485.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_757485&showErrors=false&email= BCO-DMO bcodmo_dataset_757485
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_663707 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_663707.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_663707/ public [Field collections: all data] - Nutrient concentrations, microbiology (Vibrio abundance), trace metals, and environmental conditions from collection sites in the Florida Keys National Marine Sanctuary, 2014-2016 (Vibrio as a model microbe for opportunistic heterotrophic response to Saharan dust deposition events in marine waters) Nutrient concentrations, microbiology (Vibrio abundance), trace metals, and environmental conditions from collection sites in the Florida Keys National Marine Sanctuary, 2014-2016.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ndate (year-month-day)\ntime_start_local (hours:minutes)\ndepth (m)\nlocation (unitless)\nstation_notes (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntemp (Temperature, degrees Celsius)\nsal (Practical Salinity Units (PSU))\npH (Sea Water Ph Reported On Total Scale, unitless; pH scale)\nVibrio (colony forming units/milliliter (CFU/ml))\nChl_a (Concentration Of Chlorophyll In Sea Water, micrograms/liter (ug/ml))\nDOC (micromoles/liter (ug/ml))\nTDN (micromoles/liter (ug/ml))\nDON (micromoles/liter (ug/ml))\nNH4 (Mole Concentration Of Ammonium In Sea Water, micromoles/liter (ug/ml))\nNO3 (micromoles/liter (ug/ml))\nNO2 (Mole Concentration Of Nitrite In Sea Water, micromoles/liter (ug/ml))\nOrthophosphate (micromoles/liter (ug/ml))\nSiO4 (Si O4, micromoles/liter (ug/ml))\ndFe (D Fe, nanomoles/liter (ug/ml))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_663707_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_663707/index.htmlTable https://www.bco-dmo.org/dataset/663707 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_663707.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_663707&showErrors=false&email= BCO-DMO bcodmo_dataset_663707
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_489283.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_489283 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_489283.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_489283/ public [filter tracer content] - Content of nitrogen and carbon in tracer filters from Cape Flattery, WA from 2010-2011 (Regenerated Nitrogen project) (The Role of Regenerated Nitrogen for Rocky Shore Productivity) We evaluated the role of mussels by adding 15N-labeled NH4+ to an assemblage\nof tidepools where they were either present at natural abundance levels, or\nabsent through manual removal. \\u00a0The role of phototrophs was separately\nexamined by conducting these experiments both during the day and at night.\n\\u00a0The tidal height of pools varied between 1.2 to 1.5 m above Mean Lower\nLow Water (MLLW). Tidepools were thus isolated from each other as well as the\nnearshore environment during the low tide period when experiments were\nconducted. Each experiment included 4 to 5 mussel removal (MR) tidepools\n(since 2002) and 4 to 5 mussel control (MC) tidepools with natural mussel\ndensities. \\u00a0In June 2010, we performed daytime NH4+ tracer experiments\nand in August 2010 nighttime experiments using the same tidepools. The\nfollowing year (July 2011) these experiments were repeated with the addition\nof bottle incubations (see below) to evaluate the effects of suspended\ntidepool components and extended sampling for 6 days after the initial 15N\naddition to test for long-term retention of NH4+. \\u00a0During the 2011\nexperiments, unforeseen rain reduced the salinity in some pools by up to 51%,\nand we have attempted to correct for the expected dilution of NH4+ in our\ntidepool rate calculations.\n \nBecause isotope enrichment levels were relatively low, we used the\nconventional delta notation instead of atom% to describe variations in 15N\nenrichment (where delta-15NH4+ = {(15N:14N sample \\u00f7 15N:14N standard)\n-1}\\u00d71000\\u2030, where the standard is atmospheric N2. \\u00a0Tracer\nlabeled ammonium chloride (15NH4Cl) was added to the pools to approximate a\n1000\\u2030 enrichment in 2010 (doubling the 15N-NH4+ concentration) and a\n2000\\u2030 enrichment in 2011(tripling the 15N-NH4+ concentration). 15N\nnatural abundance is only 0.365% and these tracer additions thus had a\nnegligible effect on the overall NH4+ concentrations increasing them by only\n~0.4% and ~0.8%, respectively. Tidepool volumes were estimated\nspectrophotometrically using varying concentrations of food dye (Pfister\n1995). Together with estimates of NH4+ concentration (from 2009 data), we\nestimated the tracer addition required to achieve the targeted 15N\nenrichments. However, the actual initial enrichments varied substantially,\n684.4 - 2406.4\\u2030 in 2010 and 781.4 - 3880.2\\u2030 in 2011, likely due to\nerror in tidepool volume estimation and natural variations in initial NH4+\nconcentrations. Fortunately, we sampled immediately following each tracer\naddition allowing for the determination of the true initial 15N enrichment.\n\\u00a0\n \nPrior to tracer addition at ebb tide, 100 mL of tidepool water was syringe-\nfiltered (Whatman GF/F) into separate HDPE bottles for natural abundance\n15NH4+ and concentration determination. \\u00a0To each pool, tracer 15NH4+ was\nthen added and distributed by stirring with a stick. Water samples were\nimmediately collected for measuring initial 15N enrichment and subsequently at\n2, 4, and 6 hour intervals to determine isotope and concentration time\ncourses. All water samples were frozen until analysis. Tidepool oxygen, pH,\nand temperature (Hach HQ4D) were also collected at ~ 2 h intervals throughout\nthe experiment.\n \nIn 2011 we also assessed the contribution of the suspended microbial community\nto NH4+ cycling by enclosing tidepool water in a 250 mL transparent\npolycarbonate incubation bottle. Following tracer addition, the bottle was\nfilled, then left to float in the tidepool for the duration of the experiment.\nSamples from bottles were filtered as described both immediately after\ncontainment and at the end of the experiment (~6 h later).\n \nWe assessed macroalgal contribution to NH4+ removal by transplanting two\ntidepool-dwelling algae species. \\u00a0Prionitis sternbergii were sampled 2\nweeks prior to the experiment for baseline natural abundance 15N values and\ntransplanted into the pools with Z-Spar Epoxy (Pfister 2007). On the day of\nthe experiment, the red-alga, Corallina vancouveriensis from a single source\npatch, was also sampled for 15N natural abundance, inserted into pieces of\nStyrofoam, and floated in each pool.\n \nAt the end of each experiment (~6 h sampling point), we sampled tidepool\nparticulate organic material (POM) by filtering through combusted GF/F filters\nuntil they clogged (~ 600 mL), comparing these samples with POM similarly\nsampled from the immediate nearshore. \\u00a0Floating Corallina spp. samples\nwere collected into clean Eppendorf tubes, and similar sized pieces of\nPrionitis spp. were collected from each pool into clean foil packets.\\u00a0  \n We evaluated the extent of longer-term 15N tracer retention in 2011 by\nsampling tidepool water, POM and transplanted Prionitis 1, 3, and 6 days\nfollowing tracer addition. We sampled at ebb tide and at again at slack water\njust prior to high tide on the first day after tracer addition (that is, 24 h\nlater) and at slack water prior to high tide on Day 3 and 6.\\u00a0\n \nRelevant References:\n \n2014\\. Pather, S., C. A. Pfister, M. Altabet, D. M. Post. Ammonium cycling in\nthe rocky intertidal: remineralization, removal and retention. Limnology and\nOceanography\n59:361-372.\\u00a0[http://aslo.org/lo/toc/vol_59/issue_2/0361.htm](\\\\http://aslo.org/lo/toc/vol_59/issue_2/0361.html\\\\)\n \nDOI for this dataset:\\u00a0The role of regenerated nitrogen for rocky shore\nproductivity, Cape Flattery, Washington, 2010 &\n2011.\\u00a0Handle:\\u00a0[http://hdl.handle.net/1912/6420](\\\\http://hdl.handle.net/1912/6420\\\\).\\u00a0DOI:10.1575/1912/6420\n \nRelated Datasets:  \n[ammonium removal by seaweeds](\\\\https://www.bco-dmo.org/dataset/489420\\\\)  \n[natural abundance N and C filter content](\\\\http://www.bco-\ndmo.org/dataset/489310\\\\)  \n[tidepool ammonium and mussels](\\\\https://www.bco-dmo.org/dataset/488860\\\\)  \n[tidepool incubation ammonium](\\\\https://www.bco-dmo.org/dataset/489085\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nsite (unitless)\n... (12 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_489283_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_489283/index.htmlTable https://www.bco-dmo.org/dataset/489283 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_489283.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_489283&showErrors=false&email= BCO-DMO bcodmo_dataset_489283
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_523365 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_523365.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_523365/ public [FL Stegastes Partitus Otolith Summary Data] - Summary of otolith microstructure data from Stegastes partitus collected by SCUBA dives in the Upper Florida Keys, USA from 2003-2008 (FK Fish Recruitment project, FK Population Connectivity project) (Scope and Consequences of Variability in the Early Life History Traits of a Caribbean Coral Reef Fish) Summary of data from analyses of otoliths from Stegastes partitus collected from the Florida Keys.\n\ncdm_data_type = Other\nVARIABLES:\nstage (text)\ndate_collected (unitless)\ncollection (integer)\nsite_name (text)\nsite_code (text)\nlatitude (degrees_north)\nlongitude (Site Lon, degrees_east)\nsample (integer)\nstd_length (millimeters (mm))\nmonthly_cohort (mon-yr)\nsite_descrip (text)\ncollect_catch_or_density (numeric)\npel_larv_dur (number of days)\njuv_age (days)\ndate_hatched (unitless)\ndate_spawn (unitless)\nlunar_day_spawn (integer)\nlunar_phase_spawn (ordinal)\ndate_settled (unitless)\nlunar_day_settled (integer)\nlunar_phase_settled (ordinal)\ntidal_day_settled (?)\nlarval_radius (micrometers (um))\nsettle_radius (micrometers (um))\notolith_radius (micrometers (um))\nlarval_growth_avg (micrometers (um))\njuv_growth_avg (micrometers (um))\n... (6 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_523365_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_523365/index.htmlTable https://www.bco-dmo.org/dataset/523365 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_523365.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_523365&showErrors=false&email= BCO-DMO bcodmo_dataset_523365
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_813210 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_813210.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_813210/ public [Flow Cytometry Results] - Results of the quantification of symbiont cell numbers from 400 Acropora hyacinthus colonies subjected to experimental bleaching in the summer of 2018 in Palau. (Predicting the global location of heat tolerant corals: Palau patch reefs as a general model) Results of the quantification of symbiont cell numbers from 400 Acropora hyacinthus colonies subjected to experimental bleaching in the summer of 2018 in Palau.\n\ncdm_data_type = Other\nVARIABLES:\nSample (dimensionless)\nTreatment (unitless)\nTemperature (degrees Celsius)\nSample_ID (dimensionless)\nALLEVENTS_Conc (cells/ml)\nSYMBIODINIUM_Conc (cells/ml)\nNumber_of_Events (unitless)\nCell_Count (cells/ul)\nTotal_Volume (microliters)\nAcquisition_Time (seconds)\nNegative_Total_Count (various)\nNegative_Events (cells/ml)\nNegative_Sym_Conc (various)\nNegative_Cells (cell/ul)\nNegative_Total_Vol (microliters)\nNegative_Acquisition_Time (seconds)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_813210/index.htmlTable https://www.bco-dmo.org/dataset/813210 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_813210.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_813210&showErrors=false&email= BCO-DMO bcodmo_dataset_813210
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_712761 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_712761.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_712761/ public [Geochemistry Summary] - Geochemistry summary data: single cell isotope incorporation of 1H, 2H, 12C14N, 12C15N, 12C12C, 12C13C ions from Chikyu-337 (IODP 337) ( Determination of deep biosphere cell activity and identity utilizing the state of the art low-biomass, single cell techniques developed at JAMSTEC in their class 10,000 clean room) Single cell isotope incorporation of 1H, 2H, 12C14N, 12C15N. 12C12C, 12C13C ions from samples collected on IODP Expedition 337.\n\ncdm_data_type = Other\nVARIABLES:\nOrder (unitless)\nSample (unitless)\nHorizon (unitless)\nCondition (unitless)\nAutoclaved (unitless)\nAmendment (unitless)\ncells_per_ml (number/mL)\ncells_per_cc_rock (number/(cm^3))\ncells_per_g_rock (number/g)\nDel_13C_DIC (Del 13 C DIC, per mil)\nmM_DIC (M M DIC, milliMolar (mM))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_712761/index.htmlTable https://www.bco-dmo.org/dataset/712761 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_712761.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_712761&showErrors=false&email= BCO-DMO bcodmo_dataset_712761
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_929884_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_929884_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_929884_v1/ public [GP15 Iron Ligands in Particles] - Iron ligand concentration in particles (1-51 μm) analyzed by liquid chromatography-mass spectrometry from samples collected on the US GEOTRACES Pacific Meridional Transect (PMT) cruise RR1814 (GP15) on R/V Roger Revelle in October 2018 (Trace Element Organic Speciation along the US GEOTRACES Pacific Meridional Transect) This dataset includes iron ligand concentration in particles (1-51 μm) analyzed by liquid chromatography-mass spectrometry. Samples were collected on the US GEOTRACES Pacific Meridional Transect (PMT) cruises (GP15, RR1814 & RR1815) on R/V Roger Revelle from September to November 2018.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nStation (unitless)\nLat (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nFerrioxamine_G (picomolar (pM))\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_929884_v1/index.htmlTable https://www.bco-dmo.org/dataset/929884 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_929884_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_929884_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_929884_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_763873.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_763873 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_763873/ public [HADES-K bacterial biomarker phospholipid fatty acid (PLFA)] - Sample log for HADESK bacterial biomarker phospholipid fatty acid content from sediment cores collected on R/V Thomas G. Thompson cruise TN309, May 2014 (Controls on Hadal Megafaunal Community Structure: a Systematic Examination of Pressure, Food Supply, and Topography) This dataset contains the sample log for HADESK bacterial biomarker phospholipid fatty acid (PLFA) content from sediment push cores. The same samples were also used for the organic matter (OM) analysis.  Samples were taken in the Kermadec Trench in the Southwest Pacific, 4000 to ~10,000m from the RV/ Thomas G. Thompson during cruise TN309, May 2014.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ncruise_id (unitless)\ndive (unitless)\nsite (unitless)\ndate_utc (unitless)\nstation (unitless)\ncore (unitless)\nNiWa_id (Ni Wa Id, unitless)\nhorizon_core_cm (centimeters)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_763873/index.htmlTable https://www.bco-dmo.org/dataset/763873 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_763873.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_763873&showErrors=false&email= BCO-DMO bcodmo_dataset_763873
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747699.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747699 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_747699.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_747699/ public [Hard Substrates Community Matrix, AT37-13 & AT42-03] - Matrix of taxon by sample for hard substrates collected by HOV Alvin during R/V Atlantis cruise AT37-13 and AT42-03 in the Pacific margin of Costa Rica in 2017 and 2018. (Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea) Matrix of taxon (columns) by sample (rows) for substrates collected using HOV Alvin on R/V Atlantis cruise AT37-13 in the Pacific Ocean off Costa Rica from May to June 2017\n\ncdm_data_type = Other\nVARIABLES:\nCruise (unitless)\nSample (unitless)\nAlvin_Dive (unitless)\nHabitat (unitless)\nAcari (unitless)\nAmphipoda (unitless)\nAnomura (unitless)\nBrachyura (unitless)\nCumacea (unitless)\nIsopoda (unitless)\nOstracoda (unitless)\nShrimp (unitless)\nTanaidacea (unitless)\nAnthozoa (unitless)\nAsteroidea (unitless)\nOphiuroidea (unitless)\nAplacophora (unitless)\nPlathelminthes (unitless)\nBivalvia (unitless)\nGastropoda (unitless)\nPolyplacophora (unitless)\nPolychaeta (unitless)\nHydrozoa (unitless)\nSipuncula (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_747699/index.htmlTable https://www.bco-dmo.org/dataset/747699 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_747699.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_747699&showErrors=false&email= BCO-DMO bcodmo_dataset_747699
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753388.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753388 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753388.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_753388/ public [HHQ Chlorophyll] - Chlorophyll measurements from HHQ experiments conducted during the MesoHux mesocosm experiment, May 2017, Bergen, Norway (Collaborative Research: Building a framework for the role of bacterial-derived chemical signals in mediating phytoplankton population dynamics) This dataset includes chlorophyll measurements from HHQ experiments conducted during the MesoHux mesocosm experiment, May 2017, Bergen, Norway. Microbial mesocosms were spiked with 2-heptyl-4-quinolone (HHQ).\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nSample (unitless)\nExperiment_num (unitless)\ntime2 (Time, hours)\nReplication (unitless)\nVolume_Filtered_mL (Volume Filtered M L, milliliters (mL))\nExtract_Volume_mL (Extract Volume M L, milliliters (mL))\nDilution_Factor (unitless)\nF_o (Relative Fluorescence Units (RFU))\nF_o_blank (Relative Fluorescence Units (RFU))\nF_a (Relative Fluorescence Units (RFU))\nF_a_blank (Relative Fluorescence Units (RFU))\nTotal_chl_with_phaeo (micrograms chlorophyll/Liter (ug/L))\nTotal_Chl_no_phaeo (micrograms chlorophyll/Liter (ug/L))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_753388/index.htmlTable https://www.bco-dmo.org/dataset/753388 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_753388.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_753388&showErrors=false&email= BCO-DMO bcodmo_dataset_753388
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753431 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753431.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_753431/ public [HHQ Flow Cytometry] - Flow cytometry measurements from HHQ experiments conducted during the MesoHux mesocosm experiment, May 2017, Bergen, Norway (Collaborative Research: Building a framework for the role of bacterial-derived chemical signals in mediating phytoplankton population dynamics) This dataset includes flow cytometry measurements from HHQ experiments conducted during the MesoHux mesocosm experiment, May 2017, Bergen, Norway. Microbial mesocosms were spiked with 2-heptyl-4-quinolone (HHQ).\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nSample (unitless)\nExperiment_num (unitless)\ntime2 (Time, hours)\nReplication (unitless)\nBacteria (cells/milliliter)\nSynechococcus (cells/milliliter)\nPicoeukaryotes (cells/milliliter)\nNanoeukaryotes (cells/milliliter)\nTotal_Phytoplankton_lt_15um (cells/milliliter)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_753431/index.htmlTable https://www.bco-dmo.org/dataset/753431 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_753431.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_753431&showErrors=false&email= BCO-DMO bcodmo_dataset_753431
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_649728 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_649728.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_649728/ public [Host-symbiont reinfections] - Symbiont removed and anemone reinfected with one of two strains of Symbiodinium from (AnemoneOA project) (Ocean Acidification: Understanding the Impact of CO2 and Temperature on the Physiological, Genetic, and Epigenetic Response of a Model Sea Anemone System with Different Symbionts) Symbiont removed and anemone reinfected with one of two strains of Symbiodinium from (AnemoneOA project)\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nsymbiont_id (text)\nanemone_resp_rate (micromoles of oxygen per hour per milligram protein)\nhost_CS_act (Units per milligram protein)\nsymbiont_CS_act (Units per milligram protein)\nphoto_output_symb (picomoles oxygen per hour per cell)\nsymbio_density (million cells per mg protein)\nsymbio_biomass_fraction (milligrams per milligrams(dimensionless))\nsymbio_resp_fraction (dimensionless)\nresp_biom_quotient (dimensionless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_649728/index.htmlTable https://www.bco-dmo.org/dataset/649728 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_649728.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_649728&showErrors=false&email= BCO-DMO bcodmo_dataset_649728
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_649708 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_649708.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_649708/ public [Host-Symbiont respiration relationship] - Host-symbiont respiration related to symbiont density; anemones from Key Largo from (AnemoneOA project) (Ocean Acidification: Understanding the Impact of CO2 and Temperature on the Physiological, Genetic, and Epigenetic Response of a Model Sea Anemone System with Different Symbionts) Host-symbiont respiration related to symbiont density; anemones from Key Largo from (AnemoneOA project)\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nholobiont_resp_total (micromoles of oxygen per hour)\nprot_normal_resp (micromoles of oxygen per hour per milligram protein)\nhost_CS_activity_product_total (Units per milligram protein X milligrams)\nhost_CS_activity (units per milligram protein)\ntotal_host_protein (milligrams)\nsymb_CS_activity (Units per milligram protein)\ntotal_anemone_CS_activity (Units)\nhost_DNA_total (micrograms)\nhost_symb_dens_normal (million cells per mg protein)\nsymb_biomass_fraction (dimensionless)\nsymb_respir_fraction (dimensionless)\ngenome_ratio_CO1 (dimensionless)\ngenome_ratio_AT96 (dimensionless)\ngenome_ratio_CO1_Pro (dimensionless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_649708/index.htmlTable https://www.bco-dmo.org/dataset/649708 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_649708.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_649708&showErrors=false&email= BCO-DMO bcodmo_dataset_649708
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_789061.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_789061 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_789061.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_789061/ public [HPLC analysis] - High pressure liquid chromatography analyses of photosynthetic pigments taken on the R/V Acadian and R/V Pelican from September to October 2017 in the Central northern Gulf of Mexico (Collaborative Research: A RAPID response to Hurricane Harvey's impacts on coastal carbon cycle, metabolic balance and ocean acidification) High pressure liquid chromatography analyses of photosynthetic pigments taken on the R/V Acadian and R/V Pelican from September to October 2017 in the Central northern Gulf of Mexico.\n\ncdm_data_type = Other\nVARIABLES:\nHpl_id (unitless)\nSample (unitless)\nStation (unitless)\nVolfilt (liter (L))\ndepth (m)\nDate (unitless)\ntime2 (Time, unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nTot_Chl_a (Concentration Of Chlorophyll In Sea Water, milligram per cubic meter (mg/m^3))\nTot_Chl_b (milligram per cubic meter (mg/m^3))\nTot_Chl_c (milligram per cubic meter (mg/m^3))\nalpha_beta_Car (milligram per cubic meter (mg/m^3))\nBut_fuco (milligram per cubic meter (mg/m^3))\nHex_fuco (milligram per cubic meter (mg/m^3))\nAllo (milligram per cubic meter (mg/m^3))\nDiadino (milligram per cubic meter (mg/m^3))\nDiato (milligram per cubic meter (mg/m^3))\nFuco (milligram per cubic meter (mg/m^3))\nPerid (milligram per cubic meter (mg/m^3))\nZea (milligram per cubic meter (mg/m^3))\nMV_Chl_a (Concentration Of Chlorophyll In Sea Water, milligram per cubic meter (mg/m^3))\nDV_Chl_a (Concentration Of Chlorophyll In Sea Water, milligram per cubic meter (mg/m^3))\nChlide_a (milligram per cubic meter (mg/m^3))\nMV_Chl_b (milligram per cubic meter (mg/m^3))\nDV_Chl_b (milligram per cubic meter (mg/m^3))\n... (26 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_789061_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_789061/index.htmlTable https://www.bco-dmo.org/dataset/789061 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_789061.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_789061&showErrors=false&email= BCO-DMO bcodmo_dataset_789061
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_748445 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_748445.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_748445/ public [Hydrolytic enzyme activity - Coscinodiscus] - Hydrolytic enzyme activities during CDOM monoculture experiment with Coscinodiscus (Collaborative Research: Planktonic Sources of Chromophoric Dissolved Organic Matter in Seawater) This dataset is from a laboratory experiment. Four phytoplankton cultures and their associated bacterial communities were incubated in replicate roller bottles (1.9 L) over 3-6 weeks under laboratory conditions. Bacterial dynamics in the culture bottles were measured and correlated with geochemical parameters to determine the role of bacterial activities on the formation of CDOM in the cultures (Kinsey et al., 2018, see below).\\r\\n\\r\\nThe data include fluorescence and bacterial enzyme activity during CDOM Coscinodiscus monoculture experiments. Growth stages were initial and exponential.\n\ncdm_data_type = Other\nVARIABLES:\nsubstrate (unitless)\nsample (unitless)\nfluor_t0 (relative fluorescence units)\nfluor_t1 (relative fluorescence units)\nfluor_t2 (relative fluorescence units)\nfluor_t3 (relative fluorescence units)\ntime_t0 (hours)\ntime_t1 (hours)\ntime_t2 (hours)\ntime_t3 (hours)\nenz_activity_t0 (nanoMol/hour)\nenz_activity_t1 (nanoMol/hour)\nenz_activity_t2 (nanoMol/hour)\nenz_activity_t3 (nanoMol/hour)\nSLOPE (unitless)\nRSQR (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_748445/index.htmlTable https://www.bco-dmo.org/dataset/748445 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_748445.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_748445&showErrors=false&email= BCO-DMO bcodmo_dataset_748445
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_748423 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_748423.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_748423/ public [Hydrolytic enzyme activity - other phytoplankton] - Hydrolytic enzyme activities during CDOM monoculture experiments with Skeletonema, Leptocylindrus, and Phaeocystis (Collaborative Research: Planktonic Sources of Chromophoric Dissolved Organic Matter in Seawater) This dataset is from a laboratory experiment. Four phytoplankton cultures and their associated bacterial communities were incubated in replicate roller bottles (1.9 L) over 3-6 weeks under laboratory conditions. Bacterial dynamics in the culture bottles were measured and correlated with geochemical parameters to determine the role of bacterial activities on the formation of CDOM in the cultures (Kinsey et al., 2018, see below).\\r\\n\\r\\nThe data include fluorescence and bacterial enzyme activity during CDOM monoculture experiments. The phytoplankton cultures were Skeletonema sp., Leptocylindrus sp., and Phaeocystis sp. Growth stages were initial, exponential, stationary, and degradation.\n\ncdm_data_type = Other\nVARIABLES:\nsubstrate (unitless)\ntaxon (unitless)\nsample (unitless)\nfluor_blank (relative fluorescence units)\nfluor_t0 (relative fluorescence units)\nfluor_t1 (relative fluorescence units)\nfluor_t2 (relative fluorescence units)\nfluor_t3 (relative fluorescence units)\nfluor_t4 (relative fluorescence units)\nfluor_t5 (relative fluorescence units)\nfluor_t6 (relative fluorescence units)\nfluor_t7 (relative fluorescence units)\nfluor_t8 (relative fluorescence units)\nenz_activity_blank (nanoMol/hour)\nenz_activity_t0 (nanoMol/hour)\nenz_activity_t1 (nanoMol/hour)\nenz_activity_t2 (nanoMol/hour)\nenz_activity_t3 (nanoMol/hour)\nenz_activity_t4 (nanoMol/hour)\nenz_activity_t5 (nanoMol/hour)\n... (5 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_748423/index.htmlTable https://www.bco-dmo.org/dataset/748423 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_748423.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_748423&showErrors=false&email= BCO-DMO bcodmo_dataset_748423
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_920443_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_920443_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_920443_v1/ public [In-situ pump chemical data] - Chemical analyses of size-fractionated particle samples collected during the BIOS-SCOPE cruise AE1819 in the Sargasso Sea in July 2018 (Bermuda Institute of Ocean Sciences Simons Collaboration on Ocean Processes and Ecology) Included in this dataset are chemical analyses of size-fractionated particle samples collected during BIOS-SCOPE project cruises in the Sargasso Sea starting in 2018. Samples were collected using McLane WTS-LV in-situ pumps and analyzed for phytol concentration, bulk particulate organic carbon (POC), stable carbon isotope composition, and nitrogen and carbon isotope composition of amino acids.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nCruise (unitless)\nDate (unitless)\nLatitude (degrees_north)\nlongitude (degrees_east)\nsize_fraction_um (micrometers (um))\nsplit_type (unitless)\ndepth (Depth_m, m)\ntotal_phytol_from_chlorophyll_concentration_ng_L (nanograms per liter (ng/L))\nphytol_concentration_sd_ng_L (nanograms per liter (ng/L))\nd13C_phytol_corrected_value_per_mil (per mil)\nd13C_phytol_sd_per_mil (per mil)\nd13C_POC_per_mil (per mil)\nd13C_POC_sd_per_mil (per mil)\nPOC_concentration_ug_L (micrograms per liter (ug/L))\nd13C_THAA_per_mil (per mil)\nd13C_THAA_sd_per_mil (per mil)\nTP_from_d15N_AA (unitless)\nTP_sd (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_920443_v1/index.htmlTable https://www.bco-dmo.org/dataset/920443 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_920443_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_920443_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_920443_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_811268.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_811268 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_811268.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_811268/ public [IODP360 - Archaeal and bacterial lipid biomarkers] - Supplementary Table 3A: Concentration of archaeal and bacterial lipid biomarkers, ratio of core vs intact polar lipids and average chain length of bacterial dietherglycerol lipids. (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches) Overview of archaeal and bacterial lipid biomarkers and cell counts. Concentration of archaeal and bacterial lipid biomarkers, ratio of core vs intact polar lipids and average chain length of bacterial dietherglycerol lipids. Samples  taken on board of the R/V JOIDES Resolution between November 30, 2015 and January 30, 2016\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nIntact_polar_lipids_1G_2GGDGT (Intact Polar Lipids 1 G 2 GGDGT, picograms per gram (pg/g))\nIntact_polar_lipids_1G_2GAR (Intact Polar Lipids 1 G 2 GAR, picograms per gram (pg/g))\nCore_lipids_core_GDGT (picograms per gram (pg/g))\nCore_lipids_core_archaeol (picograms per gram (pg/g))\nCore_lipids_bacterial_diether_glyerol_lipids (picograms per gram (pg/g))\nG_GDGTs_core_GDGT (picograms per gram (pg/g))\nGARs_core_ARs (picograms per gram (pg/g))\nArchaea_IPLcore (picograms per gram (pg/g))\nBacteria_average_chain_length (picograms per gram (pg/g))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_811268_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_811268/index.htmlTable https://www.bco-dmo.org/dataset/811268 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_811268.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_811268&showErrors=false&email= BCO-DMO bcodmo_dataset_811268
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_810923 https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_810923/ public [IODP360 - Drill fluid contamination testing] - Supplementary Table 2: Drill fluid contamination testiFMC in drilling. GC mass spectrometry measurements of concentrations of the tracers PFMD and Png fluid and sample materials (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches) Supplementary Table 2: Drill fluid contamination testing. GC mass spectrometry measurements of concentrations of the tracers PFMD and PFMC in drilling fluid and sample materials.\n\ncdm_data_type = Other\nVARIABLES:\nTracer (unitless)\nSample (unitless)\nReplicate (unitless)\nDrilling_Fluid (part per billion (ppb); Abbreviations: bd=below detection limit; ad=above detection limit/-a: after 4 washes; -b: after 3 washes ; -c: no core liner used)\nCore_Exterior_Before_Cleaning (part per billion (ppb); Abbreviations: bd=below detection limit; ad=above detection limit/-a: after 4 washes; -b: after 3 washes ; -c: no core liner used)\nCore_Exterior_After_Cleaning (part per billion (ppb); Abbreviations: bd=below detection limit; ad=above detection limit/-a: after 4 washes; -b: after 3 washes ; -c: no core liner used)\nCore_Interior (part per billion (ppb); Abbreviations: bd=below detection limit; ad=above detection limit/-a: after 4 washes; -b: after 3 washes ; -c: no core liner used)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_810923/index.htmlTable https://www.bco-dmo.org/dataset/810923 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_810923.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_810923&showErrors=false&email= BCO-DMO bcodmo_dataset_810923
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_811483.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_811483 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_811483.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_811483/ public [IODP360 - Replicate Cell Counts] - Supplementary Table 3B: Replicate cell counts for the 11 samples and alkaline phosphatase activity measurements available for any of the 11 samples (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches) Supplementary Table 3B: Overview of archaeal and bacterial lipid biomarkers and cell counts. Replicate cell counts for the 11 samples and alkaline phosphatase activity measurements available for any of the 11 samples. Samples were taken on board of the JOIDES Resolution  between November 30, 2015 and January 30, 2016 in the SW Indian Ridge.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nReplicate_1 (cells per cubic centimeter (cells/cm3))\nReplicate_2 (cells per cubic centimeter (cells/cm3))\nAverage (cells per cubic centimeter (cells/cm3))\nStandard_Deviation (cells per cubic centimeter (cells/cm3))\nAP_activity (picomole per gram per hour (pmol g-1 h-1))\nTime_of_AP_measurment (hours (Hr))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_811483_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_811483/index.htmlTable https://www.bco-dmo.org/dataset/811483 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_811483.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_811483&showErrors=false&email= BCO-DMO bcodmo_dataset_811483
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_941377_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_941377_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_941377_v1/ public [Low-pH springs: water samples] - Measured and calculated geochemistry values and uncertainty for water samples taken from the water column of Celestun Lagoon, Yucatan, Mexico in May of 2015 (Calcification in low saturation seawater: What can we learn from organisms in the proximity of low pH; undersaturated submarine springs) Measured and calculated geochemistry values and uncertainty for water samples taken from the water column of Celestun Lagoon, Yucatan, Mexico in May of 2015.\n\nThis dataset was collected in coordination with the following study (See \"Related Datasets\" section):\n\nIsotopes (δ11B, 87Sr/86Sr, δ18O, δ13C), elemental concentrations (B, Mg, Ca), and carbon content were collected from the foraminifera Ammonia parkinsoniana and sediments in Celestun Lagoon, Yucatan, Mexico in June 2009 and May 2015. Sediment cores were taken with push corers and piston corers. Sampling site were distributed unevenly along a transect along the lagoon. These data were collected to investigate the influence of low-pH groundwater-seawater mixing on the boron isotope pH proxy.\n\ncdm_data_type = Other\nVARIABLES:\nsite (unitless)\nlatitude (degrees_north)\nlongitude (Long, degrees_east)\ndistance (kilometers (km))\nregion (unitless)\ndate (unitless)\ntime_local (Time, unitless)\nISO_DateTime_UTC (unitless)\ntide (unitless)\nsample (unitless)\ntemperature (degrees Celsius)\nsalinity (practical salinity units (PSU))\npH (total scale)\nDIC (micromoles per kilogram (umol/kg))\nDIC_2sd (micromoles per kilogram (umol/kg))\nTA (micromoles per kilogram (umol/kg))\n... (40 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_941377_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_941377_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_941377_v1/index.htmlTable https://www.bco-dmo.org/dataset/941377 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_941377_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_941377_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_941377_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922818_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922818_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_922818_v1/ public [Macrophytes' amelioration of seawater acidity: Comparison among species] - Macrophytes' amelioration of seawater acidity: Comparison among four species of marine macrophytes (Ulva lactuca, Zostera marina, Fucus vesiculosus and Saccharina latissima) from the Gulf of Maine from June to July 2015 (REU Site: Bigelow Laboratory for Ocean Sciences - Undergraduate Research Experience in the Gulf of Maine and the World Ocean) An experiment examining the effects of increased CO2 concentrations upon the capacity of the different species of marine macrophytes to ameliorate seawater acidity via several assays in enclosed well-mixed, airtight chambers with no headspace, was conducted indoors at the Bigelow Laboratory for Ocean Sciences (Maine, USA), in June-July 2015. We explored the individual capacities of four species of marine macrophytes (Ulva lactuca, Zostera marina, Fucus vesiculosus and Saccharina latissima) to ameliorate seawater acidity in experimentally elevated pCO2. \n\nThis dataset includes data from experiment 1, comparison among species, described in the manuscript: Optimizing marine macrophyte capacity to locally ameliorate ocean acidification under variable light and flow regimes: Insights from an experimental approach (Ricart, A. M. et al. 2023).\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nSpecies (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndate_start (unitless)\ndate_end (unitless)\nTreatment (microatmospheres)\nLiters (liters (L))\nHours (unitless)\nDry_Weight (grams (g))\nSalinity (unitless)\nTemperature (degrees Celcius (°C))\nInitial_Dissolved_Oxygen (micromolar per liter (uM/L))\nInitial_pH (total scale)\nInitial_ALK (micromolar per kilogram (uM/kg))\nInitial_pCO2 (microatmospheres)\ndelta_DO_norm (unitless)\ndelta_DIC_norm (unitless)\ndelta_pH_norm (unitless)\ndelta_omega_norm (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_922818_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_922818_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_922818_v1/index.htmlTable https://www.bco-dmo.org/dataset/922818 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_922818_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_922818_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_922818_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734674 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734674.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_734674/ public [MBRS Symbiodinium OTU] - OTU molecular abundances for coral Symbiodinium, Belize Mesoamerican Barrier Reef System (MBRS), 2014-2015 (Investigating the influence of thermal history on coral growth response to recent and predicted end-of-century ocean warming across a cascade of ecological scales) This dataset contains relative abundance (counts?) of operational taxonomic units (OTUs) from Sumbiodinium samples collected from three coral species (S. siderea, S. radians, and P. strigosa) at nine sites across four latitudes along the Belize MBRS in 2014 and 2015. These sites were previously characterized into three thermally distinct regimes (lowTP, modTP, highTP) and exhibited variations in coral species diversity and richness.\n\ncdm_data_type = Other\nVARIABLES:\nspecies (unitless)\nspecies_code (unitless)\nSample (unitless)\nsite (unitless)\nthermal_type (unitless)\nlat_location (Latitude, unitless)\nillumina_run (unitless)\notu_diversity (OTU's)\nC1_I (unitless)\nB1_I (unitless)\nC1_II (unitless)\nC1_III (unitless)\nD1a (unitless)\nB1_II (unitless)\nG3 (unitless)\nA4a (unitless)\nB_BG (unitless)\nC3 (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_734674/index.htmlTable https://www.bco-dmo.org/dataset/734674 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_734674.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_734674&showErrors=false&email= BCO-DMO bcodmo_dataset_734674
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_543314.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_543314 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_543314.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_543314/ public [MO - biogeochemical and microbial field surveys] - Biogeochemical and microbial field surveys from the BATS site, Bermuda from R/V Atlantic Explorer cruises from 2009-2013 (Ocean Microbial Observatory project) (Transitions in the Surface Layer and the Role of Vertically Stratified Microbial Communities in the Carbon Cycle - An Oceanic Microbial Observatory) Biogeochemical and microbial field surveys from the BATS site, Bermuda from R/V Atlantic Explorer cruises from 2009-2013. This dataset includes water samples collected from 2009-2013 at the Bermuda Hydrostation that were analyzed for DOC, POC, bacterial abundance, leucine, and thymidine incorporation.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\ncruise_id2 (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nstation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncast_type (unitless)\ncast (unitless)\nsample (unitless)\ndepth_n (Depth, meters)\ndepth (m)\nDOC (micromoles per liter)\nDOC_stdev (umol/L)\nPOC (Particulate Organic Carbon, umol/L)\nbact_abund (10^8 cells/liter)\nbact_abund_stdev (10^8 cells/liter)\nleuc_incorp (picomoles per liter per hour)\nleu_sd (picomoles per liter per hour)\nthy_incorp (picomoles per liter per hour)\nthy_sd (picomoles per liter per hour)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_543314_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_543314/index.htmlTable https://www.bco-dmo.org/dataset/543314 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_543314.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_543314&showErrors=false&email= BCO-DMO bcodmo_dataset_543314
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_778083 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_778083.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_778083/ public [mz_30_int_from_o2] - Test of potential mass to charge 30 interferences from O2 (EAGER:  Collaborative Research:  Detection limit in marine nitrogen fixation measurements - Constraints of rates from the mesopelagic ocean) Molecular oxygen (O2) has been documented to ionize partially to NO+ in mass spectrometer sources, generating a signal that overlaps with that of 15N2 (mass-to-charge of 30). Here, we tested whether O2 needs to be specifically removed from the sample streams of the Membrane Inlet Mass Spectrometer and the Isotope Ratio Mass Spectrometer in order to properly quantitate 15N2 atom% at pertinent concentrations. Sample streams with and without O2 yielded similar signals, suggesting that O2 does not interfere with the 15N2 atom% measurements in the experimental range with the given instruments.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nTime_of_analysis (unitless)\nm_z_28 (unitless)\nm_z_29 (unitless)\nm_z_30 (unitless)\nm_z_32 (unitless)\nm_z_40 (unitless)\nN2_Ar (unitless)\nratio_28_29 (unitless)\nratio_28_30 (unitless)\natom_pcnt_15n (unitless)\nNotes (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_778083/index.htmlTable https://www.bco-dmo.org/dataset/778083 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_778083.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_778083&showErrors=false&email= BCO-DMO bcodmo_dataset_778083
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_712652 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_712652.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_712652/ public [NanoSIMS HCN - All Data] - Single cell isotope incorporation of 1H, 2H, 12C14N, 12C15N. 12C12C, 12C13C from Chikyu-337 (IODP 337) ( Determination of deep biosphere cell activity and identity utilizing the state of the art low-biomass, single cell techniques developed at JAMSTEC in their class 10,000 clean room) Single cell isotope incorporation of 1H, 2H, 12C14N, 12C15N. 12C12C, 12C13C ions from samples collected on IODP Expedition 337.\n\ncdm_data_type = Other\nVARIABLES:\nfile_name (unitless)\nSample (unitless)\nCondition (unitless)\nROI (unitless)\nMorph (unitless)\nXi (microns (or pixels, if specified))\nYi (microns (or pixels, if specified))\nH1_MEANi (unitless)\nH1_Poiss_Ei (unitless)\nH1_Poiss_pcnt_Ei (unitless)\nH1_SIZEi (microns (or pixels, if specified))\nH1_PIXELSi (unitless)\nH1_LWratio (unitless)\nH2_MEANi (unitless)\nH2_Poiss_Ei (unitless)\nH2_Poiss_pcnt_Ei (unitless)\nH2_SIZEi (microns (or pixels, if specified))\nH2_PIXELSi (unitless)\nH2_LWratio (unitless)\nH2R_MEAN (H2 R MEAN, unitless)\nH2f_MEAN (unitless)\nC12_MEANi (unitless)\nC12_Poiss_Ei (unitless)\nC12_Poiss_pcnt_Ei (unitless)\nC12_SIZEi (microns (or pixels, if specified))\nC12_PIXELSi (unitless)\n... (26 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_712652/index.htmlTable https://www.bco-dmo.org/dataset/712652 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_712652.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_712652&showErrors=false&email= BCO-DMO bcodmo_dataset_712652
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_489310.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_489310 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_489310.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_489310/ public [natural abundance N and C filter content] - Natural abundance of nitrogen and carbon on filters from Cape Flattery, WA from 2010-2011 (Regenerated Nitrogen project) (The Role of Regenerated Nitrogen for Rocky Shore Productivity) We evaluated the role of mussels by adding 15N-labeled NH4+ to an assemblage\nof tidepools where they were either present at natural abundance levels, or\nabsent through manual removal. \\u00a0The role of phototrophs was separately\nexamined by conducting these experiments both during the day and at night.\n\\u00a0The tidal height of pools varied between 1.2 to 1.5 m above Mean Lower\nLow Water (MLLW). Tidepools were thus isolated from each other as well as the\nnearshore environment during the low tide period when experiments were\nconducted. Each experiment included 4 to 5 mussel removal (MR) tidepools\n(since 2002) and 4 to 5 mussel control (MC) tidepools with natural mussel\ndensities. \\u00a0In June 2010, we performed daytime NH4+ tracer experiments\nand in August 2010 nighttime experiments using the same tidepools. The\nfollowing year (July 2011) these experiments were repeated with the addition\nof bottle incubations (see below) to evaluate the effects of suspended\ntidepool components and extended sampling for 6 days after the initial 15N\naddition to test for long-term retention of NH4+. \\u00a0During the 2011\nexperiments, unforeseen rain reduced the salinity in some pools by up to 51%,\nand we have attempted to correct for the expected dilution of NH4+ in our\ntidepool rate calculations.\n \nBecause isotope enrichment levels were relatively low, we used the\nconventional delta notation instead of atom% to describe variations in 15N\nenrichment (where delta-15NH4+ = {(15N:14N sample \\u00f7 15N:14N standard)\n-1}\\u00d71000\\u2030, where the standard is atmospheric N2. \\u00a0Tracer\nlabeled ammonium chloride (15NH4Cl) was added to the pools to approximate a\n1000\\u2030 enrichment in 2010 (doubling the 15N-NH4+ concentration) and a\n2000\\u2030 enrichment in 2011(tripling the 15N-NH4+ concentration). 15N\nnatural abundance is only 0.365% and these tracer additions thus had a\nnegligible effect on the overall NH4+ concentrations increasing them by only\n~0.4% and ~0.8%, respectively. Tidepool volumes were estimated\nspectrophotometrically using varying concentrations of food dye (Pfister\n1995). Together with estimates of NH4+ concentration (from 2009 data), we\nestimated the tracer addition required to achieve the targeted 15N\nenrichments. However, the actual initial enrichments varied substantially,\n684.4 - 2406.4\\u2030 in 2010 and 781.4 - 3880.2\\u2030 in 2011, likely due to\nerror in tidepool volume estimation and natural variations in initial NH4+\nconcentrations. Fortunately, we sampled immediately following each tracer\naddition allowing for the determination of the true initial 15N enrichment.\n\\u00a0\n \nPrior to tracer addition at ebb tide, 100 mL of tidepool water was syringe-\nfiltered (Whatman GF/F) into separate HDPE bottles for natural abundance\n15NH4+ and concentration determination. \\u00a0To each pool, tracer 15NH4+ was\nthen added and distributed by stirring with a stick. Water samples were\nimmediately collected for measuring initial 15N enrichment and subsequently at\n2, 4, and 6 hour intervals to determine isotope and concentration time\ncourses. All water samples were frozen until analysis. Tidepool oxygen, pH,\nand temperature (Hach HQ4D) were also collected at ~ 2 h intervals throughout\nthe experiment.\n \nIn 2011 we also assessed the contribution of the suspended microbial community\nto NH4+ cycling by enclosing tidepool water in a 250 mL transparent\npolycarbonate incubation bottle. Following tracer addition, the bottle was\nfilled, then left to float in the tidepool for the duration of the experiment.\nSamples from bottles were filtered as described both immediately after\ncontainment and at the end of the experiment (~6 h later).\n \nWe assessed macroalgal contribution to NH4+ removal by transplanting two\ntidepool-dwelling algae species. \\u00a0Prionitis sternbergii were sampled 2\nweeks prior to the experiment for baseline natural abundance 15N values and\ntransplanted into the pools with Z-Spar Epoxy (Pfister 2007). On the day of\nthe experiment, the red-alga, Corallina vancouveriensis from a single source\npatch, was also sampled for 15N natural abundance, inserted into pieces of\nStyrofoam, and floated in each pool.\n \nAt the end of each experiment (~6 h sampling point), we sampled tidepool\nparticulate organic material (POM) by filtering through combusted GF/F filters\nuntil they clogged (~ 600 mL), comparing these samples with POM similarly\nsampled from the immediate nearshore. \\u00a0Floating Corallina spp. samples\nwere collected into clean Eppendorf tubes, and similar sized pieces of\nPrionitis spp. were collected from each pool into clean foil packets.\\u00a0  \n We evaluated the extent of longer-term 15N tracer retention in 2011 by\nsampling tidepool water, POM and transplanted Prionitis 1, 3, and 6 days\nfollowing tracer addition. We sampled at ebb tide and at again at slack water\njust prior to high tide on the first day after tracer addition (that is, 24 h\nlater) and at slack water prior to high tide on Day 3 and 6.\\u00a0\n \nRelevant References:\n \n2014\\. Pather, S., C. A. Pfister, M. Altabet, D. M. Post. Ammonium cycling in\nthe rocky intertidal: remineralization, removal and retention. Limnology and\nOceanography\n59:361-372.\\u00a0[http://aslo.org/lo/toc/vol_59/issue_2/0361.htm](\\\\http://aslo.org/lo/toc/vol_59/issue_2/0361.html\\\\)\n \nDOI for this dataset:\\u00a0The role of regenerated nitrogen for rocky shore\nproductivity, Cape Flattery, Washington, 2010 &\n2011.\\u00a0Handle:\\u00a0[http://hdl.handle.net/1912/6420](\\\\http://hdl.handle.net/1912/6420\\\\).\\u00a0DOI:10.1575/1912/6420\n \nRelated Datasets:  \n[ammonium removal by seaweeds](\\\\https://www.bco-dmo.org/dataset/489420\\\\)  \n[filter tracer content](\\\\https://www.bco-dmo.org/dataset/489283\\\\)  \n[tidepool ammonium and mussels](\\\\https://www.bco-dmo.org/dataset/488860\\\\)  \n[tidepool incubation ammonium](\\\\https://www.bco-dmo.org/dataset/489085\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nsite (unitless)\n... (10 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_489310_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_489310/index.htmlTable https://www.bco-dmo.org/dataset/489310 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_489310.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_489310&showErrors=false&email= BCO-DMO bcodmo_dataset_489310
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516108 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516108.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_516108/ public [Nitrate Uptake] - 15NO3 uptake measured during experimental cycles in 24-hour in situ incubations on R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project) (Costa Rica Dome FLUx and Zinc Experiments) 15NO3 uptake rates measured during experimental cycles on the MV1008 cruise in the Costa Rica Dome (CRD) region of the Eastern Tropical Pacific Ocean.\n\ncdm_data_type = Other\nVARIABLES:\nevent (integer)\ncast (integer)\ncycle (integer)\ndate (unitless)\nlatitude (Event Lat, degrees_north)\nlongitude (degrees_east)\ndepth (m)\nsample (unitless)\nnitrate (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))\nNO3_uptake (Mole Concentration Of Nitrate In Sea Water, micromoles N per liter per day (umol N L-1 d-1))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_516108_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_516108/index.htmlTable https://www.bco-dmo.org/dataset/516108 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_516108.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_516108&showErrors=false&email= BCO-DMO bcodmo_dataset_516108
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_490464.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_490464 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_490464.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_490464/ public [Oculina coral OA expt] - Calcification and linear extension rates for Oculina arbuscula corals grown under different pCO2 levels; from the Cohen lab at WHOI in Woods Hole, MA (OA Nutrition and Coral Calcification project) (An Investigation of the Role of Nutrition in the Coral Calcification Response to Ocean Acidification) Data from experiments examining the effect of CO2-induced ocean acidification\non the scleractinian coral Oculina arbuscula.\n \nFor more information on the experimental methods and results, see Ries et al.,\n2010.\n \nThese data have also been deposited to PANGAEA where additional carbonate\nsystem variables were calculated as described by Nisumaa et al. (2010). See:\n[http://doi.pangaea.de/10.1594/PANGAEA.754790](\\\\http://doi.pangaea.de/10.1594/PANGAEA.754790\\\\)\n\ncdm_data_type = Other\nVARIABLES:\nomega_Arg (dimensionless)\nspecies (dimensionless)\nsample (dimensionless)\nbuoyant_wt_init (milligrams (mg))\nbuoyant_wt_final (milligrams (mg))\ncalcification_rate (percent (%))\nlinear_ext (micrometers (um))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_490464/index.htmlTable https://www.bco-dmo.org/dataset/490464 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_490464.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_490464&showErrors=false&email= BCO-DMO bcodmo_dataset_490464
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753098 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_753098.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_753098/ public [Oyster_Larvae_Length_FidalgoBay_2017] - Olympia oyster larvae length measurements from depth-specific sampling collected by boat in Fidalgo Bay, WA, during July 2017 (RUI: Will climate change cause 'lazy larvae'? Effects of climate stressors on larval behavior and dispersal) This dataset includes Olympia oyster larvae length measurements from depth-specific sampling collected by boat in Fidalgo Bay, WA, during July 2017.\n\ncdm_data_type = Other\nVARIABLES:\ntime (Date Time UTC, seconds since 1970-01-01T00:00:00Z)\ndate_local (unitless)\ntime_local (unitless)\nprofile (unitless)\nsample (unitless)\ntide (unitless)\ndepth_seafloor_m (Depth, meters)\ndepth_sample_m (Depth, meters)\ndepth_des (Depth, unitless)\nlarvae_length_um (micrometers (um ))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_753098/index.htmlTable https://www.bco-dmo.org/dataset/753098 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_753098.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_753098&showErrors=false&email= BCO-DMO bcodmo_dataset_753098
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_683072 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_683072.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_683072/ public [Palau Environmental: 2010] - Environmental data collected in marine lakes in Palau in 2010 from small boats (Do Parallel Patterns Arise from Parallel Processes?) Environmental data collected in marine lakes in Palau in 2010 from small boats. Reported parameters include depth, temperature, conductivity, salinity, oxygen, pH, light, chlorophyll, phosphate, nitrite, ammonium, and nitrate.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nlake (unitless)\ndate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\ntemp (Temperature, degrees Celsius)\ncond (milliSiemens per centimeter (mS/cm))\nsal (ppt)\nO2_diss (micromolar (uM))\npH (Sea Water Ph Reported On Total Scale, unitless)\nchl (micrograms per liter (ug/L))\nphosphate (Mass Concentration Of Phosphate In Sea Water, micromolar (uM))\nnitrite (Mole Concentration Of Nitrite In Sea Water, micromolar (uM))\nammonium (Mole Concentration Of Ammonium In Sea Water, micromolar (uM))\nnitrate (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_683072_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_683072/index.htmlTable https://www.bco-dmo.org/dataset/683072 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_683072.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_683072&showErrors=false&email= BCO-DMO bcodmo_dataset_683072
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_751313 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_751313.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_751313/ public [Particle AA CSIA ALOHA: Amino acid specific isotopes in particles] - Amino acid compound specific isotope values for particles from R/V Kilo Moana KM1407 and KM1418 in the Central North Pacific, Station ALOHA, Tropical Pacific, Feb and Sept. 2014 (Collaborative Research: Isotopic insights to mercury in marine food webs and how it varies with ocean biogeochemistry) This dataset contains amino acid compound specific nitrogen isotope ratios in particles collected during R/V Kilo Moana cruises around Station ALOHA (KM1407 and KM1418). For more information about the ALOHA observatory see: http://aco-ssds.soest.hawaii.edu/. These data were published in Gloeckler et al (2018), Supporting Information file lno10762-sup-0002-suppinfo2.xlsx\n\ncdm_data_type = Other\nVARIABLES:\nParticle_size (microns)\nSample (unitless)\ndepth (m)\ndelta15N (Delta15 N, permil)\ndelta15N_stdev (Delta15 N Stdev, permil)\ncomment (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_751313/index.htmlTable https://www.bco-dmo.org/dataset/751313 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_751313.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_751313&showErrors=false&email= BCO-DMO bcodmo_dataset_751313
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_680091 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_680091.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_680091/ public [Particulate and dissolved Lake Superior geochemistry] - Particulate multi-element geochemical concentrations, dissolved barium concentrations and barium-isotopic data collected during the R/V Blue Heron cruise BH15-11 in Lake Superior during August 2015 (EAGER - Introducing Early Career Scientists to Research on the Great Lakes) This dataset includes geochemical profiles of water samples collected in\nAugust 2015 at two stations in the western arm of Lake Superior.\n \nThese data were published in:  \n Tristan J. Horner, Helena V. Pryer, Sune G. Nielsen, Peter W. Crockford,\nJulia M. Gauglitz, Boswell A. Wing & Richard D. Ricketts (2017) Pelagic barite\nprecipitation at micromolar ambient sulfate. Nature Communications 8, Article\nnumber: 1342 (2017) doi:10.1038/s41467-017-01229-5\n \nOther relevant files and publications:  \n Horner, T. J., Kinsley, C. W., & Nielsen, S. G. (2015). Barium-isotopic\nfractionation in seawater mediated by barite cycling and oceanic circulation.\nEarth and Planetary Science Letters, 430, 511-522.\n\ncdm_data_type = Other\nVARIABLES:\nsta (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_w (Depth, meters)\ndepth (m)\nsample (unitless)\nRosette_Position (unitless)\nCTDTMP (degrees Celcius)\nBa_TD_CONC_BOTTLE (nanomoles per liter)\nBa_TD_CONC_BOTTLE_stdev (nanomoles per liter)\nBa_138_TD_DELTA_BOTTLE (per mil relative to NIST SRM 3104a)\nBa_138_TD_DELTA_BOTTLE_stdev (per mil relative to NIST SRM 3104a)\nAl_TP_CONC_BOTTLE (picomoles per liter)\nAl_TP_CONC_BOTTLE_stdev (picomoles per liter)\n... (22 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_680091_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_680091/index.htmlTable https://www.bco-dmo.org/dataset/680091 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_680091.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_680091&showErrors=false&email= BCO-DMO bcodmo_dataset_680091
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3884 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3884.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3884/ public [pigments] - Pigment concentrations (HPLC) from R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station (BATS) from 2011-2012 (Trophic BATS project) (Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea \t) Pigment concentrations are reported from four cruises in the Sargasso Sea during 2011 and 2012.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (dimensionless)\ndate_gmt (unitless)\ncast (dimensionless)\ntime_gmt (HHMM)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\ndepth (m)\nsample (dimensionless)\nsize_fraction (micrometers)\nchl_c3 (micrograms per liter)\nchl_c2 (micrograms per liter)\nperidinin (micrograms per liter)\nfucox_but_19 (micrograms per liter)\nfucox (micrograms per liter)\nfucox_hex_19 (micrograms per liter)\nneox (micrograms per liter)\nprasinox (micrograms per liter)\nviolax (micrograms per liter)\ndiadinox (micrograms per liter)\nallox (micrograms per liter)\ndiatox (micrograms per liter)\nlutein (micrograms per liter)\nzeax (micrograms per liter)\nb_carotene (micrograms per liter)\nchl_b (micrograms per liter)\nchl_a (Concentration Of Chlorophyll In Sea Water, micrograms per liter)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3884_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3884/index.htmlTable https://www.bco-dmo.org/dataset/3884 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3884.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3884&showErrors=false&email= BCO-DMO bcodmo_dataset_3884
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_664013 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_664013.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_664013/ public [Pleurochrysis carterae light-dark calcification] - Light-dark calcification rates of Pleurochrysis carterae analyzed at Bigelow Laboratory in 2013 (OA Copes Coccoliths project) (Effects of ocean acidification on Emiliania huxleyi and Calanus finmarchicus; insights into the oceanic alkalinity and biological carbon pumps) Light-dark calcification rates of Pleurochrysis carterae analyzed at Bigelow Laboratory in 2013 (OA Copes Coccoliths project)\n\ncdm_data_type = Other\nVARIABLES:\npCO2_treatment (P CO2 Treatment, parts per million (ppm))\nsample (unitless)\nlight_conditions (unitless)\nattached (coccoliths per cell)\nattached_blankCorrected (Attached Blank Corrected, coccoliths per cell)\nmean_attached_blankCorrected (Mean Attached Blank Corrected, coccoliths per cell)\nstdev_attached_blankCorrected (Stdev Attached Blank Corrected, coccoliths per cell)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_664013/index.htmlTable https://www.bco-dmo.org/dataset/664013 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_664013.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_664013&showErrors=false&email= BCO-DMO bcodmo_dataset_664013
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_726664 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_726664.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_726664/ public [Plocamium culture carbonate chemistry] - Carbonate chemistry in experimental cultures of  Plocamium cartilagineum cultured at different temperatures and pCO2 levels (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae) Carbonate chemistry in experimental cultures of  Plocamium cartilagineum cultured at different temperatures and pCO2 levels.\n\ncdm_data_type = Other\nVARIABLES:\ntrial (unitless)\nexpt_day (day number)\ndate (unitless)\nsample (unitless)\npH25 (P H25, unitless)\nsal_insitu (parts per thousand (ppt))\ntemp_insitu (degrees Celsius)\npH_insitu (P H Insitu, unitless)\nCO2 (??mol/kilogram)\npCO2 (P CO2, ??atmospheres (atm))\nfCO2 (F CO2, ??atmospheres (atm))\nHCO3 (??mol/kilogram)\nCO3 (??mol/kilogram)\nDIC (??mol/kilogram)\nALK (??mol/kilogram)\nOmegaAragonite (Omega Aragonite, unitless)\nOmegaCalcite (Omega Calcite, unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_726664/index.htmlTable https://www.bco-dmo.org/dataset/726664 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_726664.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_726664&showErrors=false&email= BCO-DMO bcodmo_dataset_726664
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_731237 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_731237.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_731237/ public [Plocamium culture: seawater delta13C] - Stable isotope ratio and concentration of carbon in seawater during Plocamium culture experiments, 2014-2015 (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae) Stable isotope ratio and concentration of carbon in seawater during Plocamium culture experiments, 2014-2015.\n\ncdm_data_type = Other\nVARIABLES:\nDate (unitless)\nSample (unitless)\nd13CVPDB (D13 CVPDB, parts per thousand (ppt))\nC_Conc_2ml (micrograms/milliliter (ug/mL))\nC_Conc_3ml (micrograms/milliliter (ug/mL))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_731237/index.htmlTable https://www.bco-dmo.org/dataset/731237 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_731237.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_731237&showErrors=false&email= BCO-DMO bcodmo_dataset_731237
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734915 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_734915.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_734915/ public [POM Concentrations] - Particulate organic matter (PON, POC, POP) concentrations collected on R/V Roger Revelle cruise RR1604 along the hydrographic line IO9 in the Eastern Indian Ocean from March to April 2016 (Collaborative Research: Regional variation of phytoplankton diversity and biogeochemical functioning in the subtropical Indian Ocean) Particulate organic matter (PON, POC, POP) concentrations collected on R/V Roger Revelle cruise RR1604 along the hydrographic line IO9 in the Eastern Indian Ocean from March to April 2016.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nStation (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nVolume (liters)\nPOC_Rep1 (micromolar (uM))\nPOC_Rep2 (micromolar (uM))\nPOC_Rep3 (micromolar (uM))\nPON_Rep1 (micromolar (uM))\nPON_Rep2 (micromolar (uM))\nPON_Rep3 (micromolar (uM))\nPOP_Rep1 (nanomolar (nM))\nPOP_Rep2 (nanomolar (nM))\nPOP_Rep3 (nanomolar (nM))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_734915_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_734915/index.htmlTable https://www.bco-dmo.org/dataset/734915 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_734915.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_734915&showErrors=false&email= BCO-DMO bcodmo_dataset_734915
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3912 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3912.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3912/ public [primary production] - Size-fractioned primary production rates from samples collected on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea Bermuda Atlantic Time-Series Station in 2011-2012 (Trophic BATS project) (Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea \t) Size-fractioned primary production rates from samples collected on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea Bermuda Atlantic Time-Series Station in 2011-2012.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (dimensionless)\ndate_gmt (unitless)\ncast (dimensionless)\ntime_gmt (HHMM)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\ndepth (m)\nsample (dimensionless)\nsize_fraction (micrometers)\nProd_NPP_light (mg C/m3/d)\nProd_NPP_light_dark (mg C/m3/d)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_3912_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3912/index.htmlTable https://www.bco-dmo.org/dataset/3912 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3912.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3912&showErrors=false&email= BCO-DMO bcodmo_dataset_3912
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914146_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_914146_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_914146_v1/ public [Quantification of ciliated band length per unit protein in early echinoderm larvae: protein data] - Quantification of ciliated band length per unit protein in early echinoderm larvae (protein data), collected between 2020 and 2022 in the laboratory at California State University, Long Beach. (RUI: Effects of large inedible particles on larval feeding, planktonic larval duration, and juvenile quality in marine invertebrates) This experiment compares the ciliated band length to protein content of eight species and the protein content of the larvae. The data was collected between 2020 and 2022 in the laboratory at California State University, Long Beach.\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nAge (days)\nDev (unitless)\nBeaker (unitless)\nSample (unitless)\nAverage (nanograms (ng))\nsd (unitless)\ngeospatial_bound_N (degrees_north)\ngeospatial_bound_S (degrees_north)\ngeospatial_bound_E (degrees_east)\ngeospatial_bound_W (degrees_east)\nexperiment_location_lat (degrees_north)\nexperiment_location_long (degrees_east)\nexperiment_start (unitless)\nexperiment_end (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_914146_v1/index.htmlTable https://www.bco-dmo.org/dataset/914146 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_914146_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_914146_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_914146_v1
log in [Recruit qPCR data] - qPCR data for Orbicella faveolata recruits throughout a symbiont acquisition laboratory experiment conducted in 2018 and 2019 (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications) qPCR data for Orbicella faveolata recruits throughout symbiont acquisition laboratory experiment. Includes proportion of different Symbiodinaceae genera hosted, and symbiont-to-host cell ratios (symbiont density).  \n\nThese data correspond to research presented in Williamson et al. (2021), published in Coral Reefs and funded in part by the NSF project \"Symbiont Shifts on Reefs\". They were used to test if Orbicella faveolata recruits could establish symbiosis with D. trenchii supplied by nearby “donor” colonies and examined the resulting ecological trade-offs to evaluate early Symbiodiniaceae manipulation as a scalable tool for reef restoration. We exposed aposymbiotic recruits to 29 °C or 31 °C and to fragments of Montastraea cavernosa (containing Cladocopium ITS2 type C3) or Siderastrea siderea (containing D. trenchii). Next, a subset of recruits were exposed to a 60-day heat stress. These data include survivorship and symbiont acquisition rates, symbiont identity and density data (derived using qPCR), polyp area measurements, and scoring of bleaching and survivorship during a heat stress experiment. Overall, proportion of D. trenchii hosted was negatively correlated with polyp size and symbiont density, indicating a trade-off between growth (of both host and symbiont) and heat tolerance. These findings suggest that, while donor colonies may be effective sources for seeding coral recruits with thermotolerant symbionts, practitioners will need to balance the likely benefits and costs of these approaches when designing restoration strategies.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\ntank (unitless)\ntemp (unitless)\nadult (unitless)\ndays (days)\nCoral_CT_mean (unitless)\nA_CT_mean (unitless)\nB_CT_mean (unitless)\nC_CT_mean (unitless)\n... (15 more variables)\n BCO-DMO bcodmo_dataset_920860_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907028_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907028_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_907028_v1/ public [RR2004 Bottle Data] - CTD-associated variables, bottle salinity measurements, oxygen titrations, nutrient analyses, biogeochemical/biological variables, and DIC/Freon chemistry variables from R/V Roger Revelle cruise RR2004 along the 150W meridian from 30S to 60S (Collaborative Research: Biogeochemical and Physical Conditioning of Sub-Antarctic Mode Water in the Southern Ocean) These data are part of the NSF project \"Collaborative Research: Biogeochemical and Physical Conditioning of Sub-Antarctic Mode Water in the Southern Ocean\". Specifically, these are the discrete bottle data from cruise RR2004 aboard R/V Roger Revelle, which sailed from Honolulu, Hawaii on 26 December 2020 to the Southern Ocean and returned to Honolulu on 23 February 2021. The purpose of the project was to define the processes that condition Sub-Antarctic Mode Water (SAMW) formed at the Sub-Antarctic Front in the Southern Ocean. The cruise track was from 30 degrees South to 60 degrees South along the 150 degrees West meridian as well as an investigation of frontal boundaries and eddies further east (from 45S to 57S by ~145W). Bottle data were collected from CTD casts with tripped Niskin bottles on the CTD Rosette. Trace-metal-clean casts were performed using Niskin-X bottles suspended on Kevlar line and a trace-metal-clean block.  \n\nThe data reported herein fall into several categories, A) CTD-associated variables, B) bottle salinity measurements, C) oxygen titrations and nutrient analyses, biogeochemical/biological variables, and D) DIC/Freon chemistry variables. Regarding the specific data, we first report CTD variables (salinity, temperature, potential temperature, density, dissolved oxygen, sound velocity, pressure,  depth,  conductivity,   SeaBird-probe-derived oxygen concentrations, chlorophyll fluorescence, beam transmittance (660nm; %), backscattering, CTD PAR, and surface PAR reference.    Next, results from bottle samples for salinity, lab oxygen titration, and nutrient concentrations (nitrate, phosphate, silicate, nitrite, and ammonium). The following biogeochemical and biological variables are presented: particulate organic carbon concentration (POC), particulate organic nitrogen (PON), and particulate inorganic carbon (PIC), concentration of detached coccoliths (given as birefringent singlets, doublets, triplets, or quadruplets, when viewed in a compound microscope with polarization optics), total coccolith concentration (the sum of singlets, doublets, triplets or quadruplets), concentration of birefringent plated coccolithophore cells, coccospheres or coccolith aggregates, planar area subtended by detached coccoliths or plated cells, concentration of biogenic silica, concentration of chlorophyll, phaeopigment and their sum. There are a suite of variables from FlowCAM measurements, mostly done on particles greater than 5 micrometers (um) in diameter: Particle size distribution function (PSDF) slope, standard error of PSDF slope, Y-intercept of the PSDF, R^2 of the PDF slope, F statistic of PSDF slope, total cell concentration per milliliter (mL), concentrations (in cells per mL) of small 0-4um diameter cells, 4-12um round cells, 4-12um diameter ovoid cells, dinoflagellates, ciliates, diatoms silicoflagellates, other unidentified cells, followed by percent of total cell concentrations and carbon biomass (using equations of Menden Deuer and Lessard) for the same cell categories. Carbon fixation rates are then presented for: ratio of calcification/photosynthesis, photosynthesis, calcification, standard deviation of photosynthesis and calcification measurements, chlorophyll concentration within incubation bottles, chlorophyll normalized photosynthesis, and calcification. Finally, corrected salinity (based on bottle salinity), corrected SeaBird oxygen values based on lab oxygen titrations, dissolved inorganic carbon (DIC) concentrations, total alkalinity and concentration of CFC12 and CFC11 freons are presented.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\n... (135 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_907028_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_907028_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_907028_v1/index.htmlTable https://www.bco-dmo.org/dataset/907028 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_907028_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_907028_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_907028_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3150 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3150.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3150/ public [salp_chloro] - Chlorophyll data associated with salp swarm collections in the Slope Waters off northeastern USA from R/V Oceanus OC370, OC379, OC381 in the slope waters off NJ, DE, MD from 2001-2002 (SalpSwarmDyn project) (Salp Swarm Dynamics) Chlorophyll data associated with salp swarm collections in the Slope Waters off northeastern USA from R/V Oceanus OC370, OC379, OC381 in the slope waters off NJ, DE, MD from 2001-2002.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id\nsample\nday_local\nmonth_local\nyear\nyrday_local\ndepth (m)\nfilter (microns)\nchl_a (Concentration Of Chlorophyll In Sea Water, microgram/liter)\nphaeo (microgram/liter)\npig_tot (microgram/liter)\nchl_per_tot\ncomments\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3150/index.htmlTable https://www.bco-dmo.org/dataset/3150 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3150.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3150&showErrors=false&email= BCO-DMO bcodmo_dataset_3150
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_880760_v2 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_880760_v2.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_880760_v2/ public [Sample Stations for COP Cruises 2021-2022] - Sample stations for the Neotrypaea COP (Community, Oxygen, & Productivity) Effects ground-truth cruises in 2021 and 2022 (Environmental consequences of expanded recruitment of an ecosystem engineer on a hypoxia-influenced continental shelf) Benthic invertebrate communities, that the highly productive US West Coast fishery species and marine mammals rely on for food, are being increasingly impacted by low oxygen conditions. This project addresses the potential ecological consequences of a new member to these benthic communities, the ghost shrimp Neotrypaea. In estuaries, Neotrypaea continuously rework the sediment via their burrowing activities. Their high abundances and geological effects make them important in mitigating impacts of nutrient run-off (natural and human-induced), which can exacerbate low oxygen conditions. Neotrypaea are also considered threats to the oyster industry because of their sediment-excavating activities. An expansion of their distribution beyond estuaries may have additional consequences for the Dungeness crab fishery (regionally valued at $33-74M/y) as Neotrypaea sp. are both competitors with juveniles and prey for larger Dungeness crab. This project will ground-truth predictions of Neotrypaea's new offshore distribution with video and sample collections. Using box core samples we will document differences in potentially interacting benthic communities within the Neotrypaea beds as compared to areas not colonized by the shrimp. These new data are needed to determine whether the existing species composition is altered by the recruitment of Neotrypaea. We will estimate the shrimp's contribution to benthic oxygen and nutrient fluxes by using aquatic eddy covariance (EC) methods and core incubations in shelf areas with and without abundant shrimp. This dataset includes the sampling locations for the model ground-truthing/community changes (box core collections) and the EC lander deployment and slow core collections. Coastal waters along the OR-WA shelf are subject to growing human related management, extractive, cultural, and recreational activities. This research is particularly needed for commercial fisheries stakeholders in decisions regarding ocean-use planning and be valuable to oyster growers concerned over burrowing shrimp pest management.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nSample_Date (unitless)\nProject (unitless)\nVessel (unitless)\nCruiseID (unitless)\nSite (unitless)\n... (13 more variables)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_880760_v2_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_880760_v2_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_880760_v2/index.htmlTable https://www.bco-dmo.org/dataset/880760 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_880760_v2.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_880760_v2&showErrors=false&email= BCO-DMO bcodmo_dataset_880760_v2
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_931469_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_931469_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_931469_v1/ public [Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC)] - Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC) collected during West Florida Coastal Surveys of Seagrass from Feb 2022 to Oct 2023 (Collaborative Research: VIDA Seagrass: Viral Infection Dynamics Among Seagrass) This dataset includes Sanger sequence references for 40 Thalassia testudinum samples collected during systematic seagrass surveys from multiple Florida sites, including Terra Ceia Aquatic Preserve, Tampa Bay seagrass sites S1T5 and S3T8 (Lassing Park), Panacea located in the Florida Panhandle, and Florida Keys sites including Bush Key, Garden Key, Marquesas Key, and Key West.\nWe investigated potexvirus distribution in seagrasses using a degenerate reverse transcription polymerase chain reaction (RT-PCR) assay originally designed to capture potexvirus diversity in terrestrial plants. The assay, which implements Potex-5 and Potex-2RC primers, successfully amplified a 584 nt RNA-dependent RNA polymerase (RdRp) fragment from TVX-infected seagrasses. Following validation, we screened 74 opportunistically collected, apparently healthy seagrass samples for potexviruses using this RT-PCR assay.\nPotexvirus PCR products were successfully generated from Thalassia testudinum samples. Sequences from these products are deposited in NCBI GenBank under the accession numbers OR827692-OR827705, OR854648, OR863396, OR879052-OR879056, and PP430548-PP430571.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nregion (unitless)\nsite (unitless)\ndate (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsample_host (unitless)\nAphia_id (unitless)\nGenbank_accession (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_931469_v1_fgdc.xml https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_931469_v1_iso19115.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_931469_v1/index.htmlTable https://www.bco-dmo.org/dataset/931469 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_931469_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_931469_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_931469_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718117 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718117.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_718117/ public [SBDOM11 mini-remineralization expt.] - Dilution batch-culture bioassay (remineralization) experiments from SBDOM11 project cruise from R/V Point Sur PS1103 in the Santa Barbara Channel, May 2011 (SBDOM project, SBC LTER project) (Mechanisms controlling the production and fate of DOM during diatom blooms) This dataset includes results from dilution batch-culture bioassay experiments reporting bacterial abundance, growth rates, barcode sequences and DOC were from the SBDOM 11 cruise in May 2011.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nsta_id (unitless)\nbottle (unitless)\nInitiation_date (unitless)\nInitiation_time (unitless)\nTimepoint (unitless)\nDate (unitless)\nDOC_sampling_time (unitless)\nDOC_Bottle_A (micromol/liter)\nDOC_A_st_dev (micromol/liter)\nDOC_Bottle_B (micromol/liter)\nDOC_B_st_dev (micromol/liter)\nBact_abun_sampling_time (unitless)\nBact_abun_A (cells/liter)\nBact_abun_B (cells/liter)\nDNA_sampling_time (unitless)\nPyrosequencing_barcode (unitless)\nmu_growth_A (cells/day)\nmu_growth_B (cells/day)\nBGE_A (unitless)\nBGE_B (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_718117/index.htmlTable https://www.bco-dmo.org/dataset/718117 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_718117.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_718117&showErrors=false&email= BCO-DMO bcodmo_dataset_718117
log in [Seagrass Microbiome Data] -  (Collaborative Research: The role of a keystone pathogen in the geographic and local-scale ecology of eelgrass decline in the eastern Pacific) This dataset includes sample collection information and sequence accessions for 16S rRNA amplicon sequencing of eelgrass leaf and surrounding water column bacteria from 32 eelgrass meadows across latitudes from 55 to 32° N in the Northeastern Pacific during July and August 2019.  Sequence Read Archive (SRA) Experiments and BioSamples can be accessed from the NCBI BioProject PRJNA802566 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA802566/)\n\nEelgrass, Zostera marina, is impacted by outbreaks of wasting disease caused by the opportunistic pathogen Labyrinthula zosterae. We investigated how Z. marina phyllosphere microbial communities vary with rising wasting disease lesion prevalence and severity relative to plant and meadow characteristics like shoot density, longest leaf length, and temperature across 23° latitude in the Northeastern Pacific. We sampled 32 eelgrass meadows across latitudes from 55 to 32° N in the Northeastern Pacific during July and August 2019. This range included six regions (AK=Alaska, BC=British Columbia, WA=Washington, OR=Oregon, BB=Bodega Bay Northern California, SD=San Diego Southern California), with 5–6 meadows per region. The location of each region is AK: N 55° 32' 27.124” W 133° 11' 1.0546, BC: N 51° 48' 30.1469” W 128° 13' 27.2182, WA: N 48° 36' 4.9725” W 122° 59' 56.4203, OR: N 44° 69 43.717” W 124° 89 22.7337, BB: N 38° 14' 30.3218” W 122° 58' 32.5723, SD: N 32° 47' 37.5929” W 117° 12' 57.1071”. We selected eelgrass meadows within each region that had consistently high cover of eelgrass in recent years.\n\ncdm_data_type = Other\nVARIABLES:\nsample_title (unitless)\nSampleType (unitless)\nRegionName (unitless)\nSiteCode (unitless)\nTissueType (unitless)\nLesionStatus (unitless)\ncollection_date (unitless)\nLocationName (unitless)\nTidalHeight (unitless)\nTransect (unitless)\n... (8 more variables)\n BCO-DMO bcodmo_dataset_933635_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_682298 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_682298.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_682298/ public [Seeded microcosm experiments: all data] - Nutrients, microbiology, trace metals, and environmental conditions from seeded microcosm experiments (Vibrio as a model microbe for opportunistic heterotrophic response to Saharan dust deposition events in marine waters) Nutrients, microbiology, trace metals, and environmental conditions from seeded microcosm experiments.\n\ncdm_data_type = Other\nVARIABLES:\nyear (year)\nexpt (unitless)\ntreatment (unitless)\nlight_dark (unitless)\nvessel (unitless)\nreplicate (unitless)\ntime_elapsed_hr (hours)\nsample (unitless)\nVibrio (colony forming units/milliliter (CFU/ml))\nChl_a (Concentration Of Chlorophyll In Sea Water, microgram/liter (ug/L))\nDOC (micromol/liter C (umol/L))\nDON (micromol/liter N (umol/L))\nNH4 (micromol/liter N (umol/L))\nNO3 (micromol/liter N (umol/L))\nNO2 (Mole Concentration Of Nitrite In Sea Water, micromol/liter N (umol/L))\nOrthophosphate (micromol/liter P (umol/L))\nSiO4 (Si O4, micromol/liter Si (umol/L))\ndFe (D Fe, nanoMolar (nM))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_682298/index.htmlTable https://www.bco-dmo.org/dataset/682298 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_682298.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_682298&showErrors=false&email= BCO-DMO bcodmo_dataset_682298
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_735806 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_735806.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_735806/ public [SIMCO: DOC and salinity 2014] - Dissolved organic carbon (DOC) and salinity data from seasonal collections/incubations, Doboy Sound, Sapelo Island, GA, July and October 2014 (High Resolution Linkages Between DOC Turnover and Bacterioplankton in a Coastal Ocean) DOC from field and incubation collections of estuarine waters near Sapelo Island, GA in July and October 2014 was analyzed for chemical concentrations. Analysis of the dissolved organic carbon pool retrieved by solid-phase extraction (PPL resin) was analyzed to determine organic carbon concentrations (by TOC Analyzer; Shimadzu).\n\ncdm_data_type = Other\nVARIABLES:\ndate (unitless)\nsample (unitless)\nDOC_uM (DOC U M, microMol)\nSalinity_psu (Sea Water Practical Salinity, practical salinity units)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_735806/index.htmlTable https://www.bco-dmo.org/dataset/735806 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_735806.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_735806&showErrors=false&email= BCO-DMO bcodmo_dataset_735806
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_765037 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_765037.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_765037/ public [Spatial surveys of carbonate chemistry in Kaneohe Bay] - Spatial surveys of carbonate chemistry conducted in Kaneohe Bay, Hawaii from small boats during 2015 to 2017 (CAREER: Biogeochemical Modification of Seawater CO2 Chemistry in Near-Shore Environments: Effect of Ocean Acidification) General study design:\\r\\nIn this study, seawater carbonate chemistry samples were collected across a spatial array of stations across the barrier reef flat of K\\u0101ne\\u02bbohe Bay, Hawai\\u02bbi. The study was designed to assess spatial variability in carbonate chemistry across the barrier reef flat during the 2015 fall coral bleaching event and during a year of recovery following the coral bleaching.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nreefstatus (unitless)\ndate (unitless)\ntime2 (Time, unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntemp (Temperature, degrees Celsius)\nsal (psu)\nta (micromoles per kilogram (umol/kg))\ndic (micromoles per kilogram (umol/kg))\ntime (ISO Date Time Local, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_765037_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_765037/index.htmlTable https://www.bco-dmo.org/dataset/765037 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_765037.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_765037&showErrors=false&email= BCO-DMO bcodmo_dataset_765037
log in [Subsurface Nitrospirota and Nitrospinota Origins] - Collection of subsurface bacteria Nitrospirota and Nitrospinota genome data including IMG and NCBI accessions for sequence datasets in June 2021 (Slow Life in Crust project) (Microbial activity in the crustal deep biosphere) The phyla Nitrospirota and Nitrospinota have received significant research attention due to their unique mitrogen metabolisms important to biogeochemical and industrial processes. These phyla are common inhabitants of marine and terrestrial subsurface environments and contain members capable of diverse physiologies in addition to nitrite oxidation and complete ammonia oxidation. We used phylogenomics and gene-based analysis with ancestral state reconstruction and gene-tree-species tree reconciliation methods to investigate the life histories of these two phyla. This dataset includes list of previously-published sequence datasets that were used for the analysis. The data and interpretations are published at DOI 10.1038/s41396-023-01397-x. Additional metadata such as NCBI accessions, assembly release dates, and NCBI taxon ids were added in December 2024.\n\ncdm_data_type = Other\nVARIABLES:\nID (unitless)\nIMG_genome_id (unitless)\nGenBank_assembly (unitless)\nSample (unitless)\nCorrected_BioSample (unitless)\nBioProject (unitless)\nrelease_date (unitless)\nlast_updated_date (seconds since 1970-01-01T00:00:00Z)\npublication_date (seconds since 1970-01-01T00:00:00Z)\nDomain (unitless)\nPhylum (unitless)\nClass (unitless)\nOrder (unitless)\nFamily (unitless)\nGenus (unitless)\nSpecies (unitless)\nNCBI_organism_taxid (unitless)\nIsolation_Source (unitless)\nIsolationPlot (unitless)\n... (11 more variables)\n BCO-DMO bcodmo_dataset_933610_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918860_v1 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918860_v1.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918860_v1/ public [T. pseudonana starve-recover experiments: Cell information] - Diatom (Thalassiosira pseudonana) cell information from experiments designed to study single-cell transcriptional profiling of nutrient acquisition heterogeneity in diatoms conducted in December of 2022 (EAGER: Diatom Programmed Cell Death at Single-Cell Resolution) This dataset includes cell information for diatom Thalassiosira pseudonana grown during experiments conducted as part of a study of \"Single-Cell transcriptional profiling of nutrient acquisition heterogeneity in diatoms.\"  See \"Related Datasets\" section for T. pseudonana physiological data and gene information collected as part of the same study and experiments.\n\n\nStudy description: \n\nDiatoms (Bacillariophyceae) are unicellular photosynthetic algae, accounting for about 40% of total marine primary production (equivalent to terrestrial rainforests) and critical ecological players in the contemporary ocean. Diatoms can form enormous blooms in the ocean that can be seen from space and are the base of food webs in coastal and upwelling systems, support essential fisheries, and are central to the biogeochemical cycling of important nutrients such as carbon and silicon. Over geological time, diatoms have influenced the world's climate by changing the carbon flux into the oceans. \n\n\nDiatoms have traditionally been studied on a population level. Growth is often measured by the total increase in biomass, and gene expression is analyzed by isolating mRNA from thousands or millions of cells. These methods generate a valuable analysis on the population's average functioning; however, they fail to show how each individual diatom cell contributes to the population phenotype. Bulk transcriptomes confound different stages and variability of cell states in heterogeneous populations. By contrast, single-cell transcriptomics measures gene expression in thousands of individual diatoms providing a quantitative and ultrahigh-resolution picture of transient cell states in population fractions enabling the reconstruction of the various phenotypic trajectories. Thus, the single-cell physiological and molecular parameters analysis allows an unsupervised assessment of cell heterogeneity within a population—a new dimension in diatoms and phytoplankton in general. \n\n\nIn this dataset, we examine the model diatom Thalassiosira pseudonana clonal cells grown in different nitrogen conditions, at the single cell level when grown in a light: dark cycle (12:12 h). Nitrogen is the major limiting nutrient for primary production and growth in the ocean's surface, specifically for diatoms and the food webs they support. We investigate nutrient limitation, starvation and recovery. We used droplet-based, single-cell transcriptomics to analyze ten samples in two stages.  In the first stage (\"starvation\"), six samples were collected over four days of culture as nutrient levels decreased.  In the second stage (\"recovery\"), four samples were collected over twelve hours after nutrients were replenished.\n\ncdm_data_type = Other\nVARIABLES:\nstage (unitless)\n... (5 more variables)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918860_v1/index.htmlTable https://www.bco-dmo.org/dataset/918860 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918860_v1.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918860_v1&showErrors=false&email= BCO-DMO bcodmo_dataset_918860_v1
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3668.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3668 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3668.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_3668/ public [T_pseudonana_growth] - Results from metal limitation experiments (Cu, Zn, Fe, Mn) conducted in the diatom T. pseudonana carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011 (Expression profiling and functional genomics of a pennate diatom: Mechanisms of iron acquisition, stress acclimation, and recovery) Results from metal limitation experiments (Cu, Zn, Fe, Mn) conducted in the diatom T. pseudonana carried out in the Kustka and Allen labs at Rutgers in Newark, NJ from 2007-2011\n\ncdm_data_type = Other\nVARIABLES:\nsample (dimensionless)\nmetal (dimensionless)\ncondition (dimensionless)\ngrowth_rate (ln(cell density)/day)\ngrowth_rate_se (dimensionless)\np_fe_prime (dimensionless)\np_cu_prime (dimensionless)\np_mn_prime (dimensionless)\np_zn_prime (dimensionless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_3668/index.htmlTable https://www.bco-dmo.org/dataset/3668 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_3668.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_3668&showErrors=false&email= BCO-DMO bcodmo_dataset_3668
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_809807 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_809807.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_809807/ public [Table 1. 210Pb, 210Bi, and 210Po activities in rain and lake water] - Table 1: Pb-210, Bi-210, and Po-210 activity measurements in rain, lake water, and dreissenid (Quagga) mussels collected in the Milwaukee Inner Harbor on Lake Michigan, Nov. 2018 (The measurement and use of bismuth-210 as a tracer of particle flux in aquatic systems) Pb-210, Bi-210, and Po-210 activity measurements in rain, lake water, and dreissenid (Quagga) mussels collected at the School of Freshwater Sciences\\u2019 slip in the Milwaukee Inner Harbor on Lake Michigan, Nov. 2018. This is table 1 in Waples (2020), Limnol. Oceanogr. Methods.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\ntype (unitless)\nISO_DateTime_Local (ISO Date Time Local, unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nPb_dpm (disintegrations/minute/minute^3 (DPM m-3))\nPb_stdev (disintegrations/minute/minute^3 (DPM m-3))\nPb_calc_method (unitless)\nBi_dpm (disintegrations/minute/minute^3 (DPM m-3))\nBi_stdev (disintegrations/minute/minute^3 (DPM m-3))\nBi_calc_method (unitless)\nPo_dpm (disintegrations/minute/minute^3 (DPM m-3))\nPo_stdev (disintegrations/minute/minute^3 (DPM m-3))\nPo_calc_method (unitless)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_809807_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_809807/index.htmlTable https://www.bco-dmo.org/dataset/809807 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_809807.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_809807&showErrors=false&email= BCO-DMO bcodmo_dataset_809807
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_809857.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_809857 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_809857.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_809857/ public [Table 2. Suspended particulate matter (SPM) concentrations in lake water] - Table 2: Suspended particulate matter (SPM) concentrations in lake water (The measurement and use of bismuth-210 as a tracer of particle flux in aquatic systems) Table 2. Suspended particulate matter (SPM) concentrations in lake water, Lake Michigan, Nov. 2018\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nISO_DateTime_Local (ISO Date Time Local, unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nSPM_b (grams/meter^3 (g m-3))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_809857_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_809857/index.htmlTable https://www.bco-dmo.org/dataset/809857 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_809857.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_809857&showErrors=false&email= BCO-DMO bcodmo_dataset_809857
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_809898.subset https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_809898 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_809898.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_809898/ public [Table 3: 210Pb, 210Bi, and 210Po activities in mussels] - Table 3: 210Pb, 210Bi, and 210Po activities in quagga mussels (Dreissena rostriformis bugensis) from Lake Michigan in 2018, from Waples (2020) Limnol. Oceanogr. Methods. (The measurement and use of bismuth-210 as a tracer of particle flux in aquatic systems) Table 3: 210Pb, 210Bi, and 210Po activities in quagga mussels (Dreissena rostriformis bugensis) from Lake Michigan in 2018, from Waples (2020) Limnol. Oceanogr. Methods.\n\ncdm_data_type = Other\nVARIABLES:\nsample (unitless)\nISO_DateTime_Local (ISO Date Time Local, unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nPb_dpm (disintegrations per minute per gram (DPM g-1))\nPb_stdev (disintegrations per minute per gram (DPM g-1))\nBi_dpm (disintegrations per minute per gram (DPM g-1))\nBi_stdev (disintegrations per minute per gram (DPM g-1))\nPo_dpm (disintegrations per minute per gram (DPM g-1))\nPo_stdev (disintegrations per minute per gram (DPM g-1))\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_809898_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_809898/index.htmlTable https://www.bco-dmo.org/dataset/809898 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_809898.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_809898&showErrors=false&email= BCO-DMO bcodmo_dataset_809898
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516062 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_516062.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_516062/ public [Th-234 activity] - Water column Th-234 activity determined using a 4-L technique from samples collected on R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project) (Costa Rica Dome FLUx and Zinc Experiments) Water column Thorium-234 and Uranium-238 measured on the MV1008 cruise in the Costa Rica Dome (CRD) region of the Eastern Tropical Pacific Ocean.\n\ncdm_data_type = Other\nVARIABLES:\nevent (integer)\ncast (integer)\ncycle (integer)\ndepth (m)\nniskin (integer)\nsample (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsal (practical salinity units (PSU))\ndensity (kilograms per cubic meter (kg m-3))\nU238_activity (decays per minute per liter (dpm L-1))\nTh234_activity (decays per minute per liter (dpm L-1))\nuncertainty (decays per minute per liter (dpm L-1))\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_516062_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_516062/index.htmlTable https://www.bco-dmo.org/dataset/516062 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_516062.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_516062&showErrors=false&email= BCO-DMO bcodmo_dataset_516062
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_778126 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_778126.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_778126/ public [trial_a] - Trial A test of the dissolution method for estimates of the 15N2 atom% of incubations (EAGER:  Collaborative Research:  Detection limit in marine nitrogen fixation measurements - Constraints of rates from the mesopelagic ocean) The \\u201cdissolution\\u201d method to measure N2 fixation rates with 15N2 gas tracer involves the preparation of 15N2-enriched water that is then added to each incubation bottle. Investigators typically measure the 15N2 atom% of the 15N2-enriched inoculum by MIMS, and extrapolate the 15N2 atom% in the incubations based on the inoculum value. Here, we demonstrate that such extrapolation yields inaccurate estimates of the 15N2 atom% of incubations. The latter should be measured directly.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nBaro_Press (unknown)\nTime_of_analysis (unitless)\nm_z_28 (unitless)\nm_z_29 (unitless)\nm_z_30 (unitless)\nm_z_32 (unitless)\nm_z_40 (unitless)\nN2_Ar (unitless)\nratio_28_29 (unitless)\nratio_28_30 (unitless)\nmeas_at_pcnt (unitless)\navg_measured_a_pcnt (unitless)\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_778126/index.htmlTable https://www.bco-dmo.org/dataset/778126 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_778126.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_778126&showErrors=false&email= BCO-DMO bcodmo_dataset_778126
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_732587 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_732587.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_732587/ public [Ulva: seawater delta13C] - Stable isotope ratio and concentration of carbon in seawater from Ulva OA experiments (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae) This dataset includes stable isotope ratio and concentration of carbon in seawater during Ulva culture experiments grown at 15C temperatures under various CO2 levels, during May through July 2015.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\npCO2_avg (P CO2 Avg, microatmospheres (µatm))\npCO2_sd (P CO2 Sd, microatmospheres (µatm))\nd13CVPDB (D13 CVPDB, parts per thousand (ppt))\n https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_732587/index.htmlTable https://www.bco-dmo.org/dataset/732587 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_732587.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_732587&showErrors=false&email= BCO-DMO bcodmo_dataset_732587
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_529026 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_529026.graph https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_529026/ public [vent chemical composition-Crab Spa] - Chemical composition of diffuse flow vent fluids collected from the Crab Spa site at East Pacific Rise during the AT26-10 oceanographic expedition, Jan. 2014 (Microbial Communities at Deep-Sea Vents project) (An Integrated Study of Energy Metabolism, Carbon Fixation, and Colonization Mechanisms in Chemosynthetic Microbial Communities at Deep-Sea Vents) This dataset includes\\u00a0chemical composition (Cl, SO4, Na, K, Mg, and Ca\nconcentrations) of diffuse flow vent fluids collected from the Crab Spa\n(9.8398\\u00ba N, 104.2913\\u00ba W) site at East Pacific Rise during the\nRV/Atlantic AT26-10 oceanographic expedition, Jan. 2014.\n\ncdm_data_type = Other\nVARIABLES:\ndate (unitless)\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth (m)\nsample (unitless)\nCl (mmoles/kg)\nCl_stdev (mmoles/kg)\nSO4 (mmoles/kg)\nSO4_stdev (mmoles/kg)\nNa (mmoles/kg)\nK (mmoles/kg)\nMg (mmoles/kg)\nCa (mmoles/kg)\n https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_529026_fgdc.xml https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_529026/index.htmlTable https://www.bco-dmo.org/dataset/529026 (external link) https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_529026.rss https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_529026&showErrors=false&email= BCO-DMO bcodmo_dataset_529026

 
ERDDAP, Version 2.22
Disclaimers | Privacy Policy | Contact