Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| log in | [Hypoxia Tent Experiment 2022] - Sequence accession numbers for 16S rRNA genes characterizing microbiome changes in Agaricia tenuifolia and Siderastrea siderea coral species after being exposed to hypoxia and after a short period of recovery in 2022 experiments (Collaborative Research: Biodiversity and resilience of corals and their microbiomes in response to ocean deoxygenation) | This dataset includes accession numbers and related information for 16S rRNA genes characterizing microbiome changes in Agaricia tenuifolia and Siderastrea siderea coral species after being exposed to hypoxia and after a short period of recovery. Corals for the experiment were collected by SCUBA divers in summer 2022. Sequence data are available in The National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject accession PRJNA1197146.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nBioSample (unitless)\nsample (unitless)\nSRA_Experiment (unitless)\nSRA_Run (unitless)\nSRA_Study (unitless)\ndate (unitless)\nsample_descrip (unitless)\nhost (unitless)\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\n | BCO-DMO | bcodmo_dataset_986518_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782197 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_782197.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_782197/ | public | [Lost City AT42-01 Collected Fluids] - Samples collected and their associated temperatures on an expedition to the Lost City hydrothermal field on R/V Atlantis cruise AT42-01 in September 2018 (Collaborative Research: Investigating the Lost City as an ultramafic urban center of the subseafloor, fueled by energy and carbon from the mantle) | Summary of samples collected by the Hydrothermal Organic Geochemistry (HOG) sampler on AT-4201 with ROV Jason, on dives J2_1107 through J2_1111, during R/V Atlantic cruise AT42-01, September 9 - October 1, 2018.\n\ncdm_data_type = Other\nVARIABLES:\nSample_Descrip (unitless)\nSample_ID (unitless)\nSample_Type (unitless)\nSite (unitless)\nDate_GMT (unitless)\nStart_Time_GMT (unitless)\nEnd_Time_GMT (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nAverage_T (degrees Celsius)\nHighest_T (degrees Celsius)\ntime (ISO Date Time Start GMT, seconds since 1970-01-01T00:00:00Z)\nISO_DateTime_End_GMT (ISO Date Time End GMT, unitless)\nComment (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_782197_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_782197/index.htmlTable | https://www.bco-dmo.org/dataset/782197
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_782197.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_782197&showErrors=false&email= | BCO-DMO | bcodmo_dataset_782197 | ||||
| log in | [Prokaryotic metatranscriptomics of corals experimentally exposed to low oxygen] - Sequence accession numbers for metatranscriptomic sequences from coral microbiomes experimentally exposed to low oxygen in 2022 (Collaborative Research: Biodiversity and resilience of corals and their microbiomes in response to ocean deoxygenation) | This dataset includes accession numbers and related information for prokaryotic metatranscriptomic (RNAseq) libraries of Agaricia tenuifolia and Siderastrea siderea coral species experimentally exposed to low oxygen conditions. Sequence data are available in The National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject accessions PRJNA1098207 and PRJNA1041355.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nBioSample (unitless)\nsample (unitless)\nSRA_Experiment (unitless)\nSRA_Run (unitless)\nSRA_Study (unitless)\ndate (unitless)\nsample_descrip (unitless)\nhost (unitless)\nsite (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\n | BCO-DMO | bcodmo_dataset_986522_v1 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_794163 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_794163.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_794163/ | public | [Salt marsh carbonate and organic carbon chemistry 2016] - Discrete bottle sample measurements for carbonate chemistry, organic alkalinity and organic carbon from samples collected in Waquoit Bay and Vineyard Sound, MA in 2016 (Collaborative Research: The Paradox of Salt Marshes as a Source of Alkalinity and Low pH, High Carbon Dioxide Water to the Ocean: A First In-depth Study of A Diminishing Source) | Discrete bottle sample measurements for carbonate chemistry, organic alkalinity and organic carbon from samples collected in Waquoit Bay and Vineyard Sound, MA in 2016.\n\ncdm_data_type = Other\nVARIABLES:\nsample_descrip (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nDIC (micromoles per kilogram (umol kg-1))\nTA (micromoles per kilogram (umol kg-1))\nOrgAlk (Org Alk, micromoles per kilogram (umol kg-1))\nDOC (micromoles per kilogram (umol kg-1))\npH (Sea Water Ph Reported On Total Scale, unitless)\nTemp (Temperature, degrees Celsius)\nSal (practical salinity scale)\nElevation (meters)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_794163_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_794163/index.htmlTable | https://www.bco-dmo.org/dataset/794163
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_794163.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_794163&showErrors=false&email= | BCO-DMO | bcodmo_dataset_794163 | ||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_616269.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_616269 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_616269.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_616269/ | public | [SAR11_DOM_GIO15: AE1516 sample log] - Experimental results and survey of biogeochemical and microbial data collected on the R/V Atlantic Explorer (AE1516) at the Bermuda Atlantic Time-series study site during 2015 (Bacterial DOC cycling project) (Dissolved Organic Carbon Cycling by SAR11 Marine Bacteria) | This dataset is a log of samples collected on AE1516 at the Bermuda Atlantic Time-series study site (BAT) Hydrostation S. The samples were analyzed for microbial diversity, dissolved organic carbon (DOC), total DOC, single celled genomics, and an osmolyte inculation experiment.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\nsample_descrip (unitless)\nperson (unitless)\ndate (unitless)\ntime2 (Time, hh:mm)\ndepth (m)\nsample_id (unitless)\nfiltrand_id (unitless)\nTOC_id (unitless)\nsample_volume (milliliters)\nfilter_size (unitless)\npreservation (unitless)\nincubation (hours)\ntemp_stored (degrees Celsius)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_616269/index.htmlTable | https://www.bco-dmo.org/dataset/616269
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_616269.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_616269&showErrors=false&email= | BCO-DMO | bcodmo_dataset_616269 | ||||
| log in | [X-ray diffraction from seafloor sulfide deposits East Pacific Rise 9-10 North] - Synchrotron micro-probe X-ray diffraction data from seafloor sulfide deposits collected during cruise AT42-09 on the East Pacific Rise (EPR) in April 2019 (Collaborative Research: From hot to cold in the dark - shifts in seafloor massive sulfide microbial communities as physical and geochemical conditions change after venting ceases) | Synchrotron micro-probe X-ray diffraction data were collected for seafloor sulfide deposits. Seafloor sulfide mineral samples were collected from hydrothermally active chimneys and inactive off-axis massive sulfide deposits at East Pacific Rise (EPR) 9.50°N in 2019-2021 on cruise AT42-09. Samples were collected using the HOV Alvin. Samples were placed in a positive-pressure glove bag flushed with N2 (g), sparged with N2, heat-sealed into mylar bags containing Anaeropaks, and stored at -20°C.\n\nEpoxy embedded petrographic thin sections were created using these samples. Subsamples were dried for 24 hours under N2 (g), vacuum embedded in epoxy resin (Struers EpoFix Resin, 1L kit: Part #40200030) following manufacturer's guidelines, and cured under N2 (g) for 24 hours. Each epoxy-embedded sample was pre-cut using a wafering saw then sent to Spectrum Petrographics, Inc. (Washington, USA) for preparation as 30 micron thick, double-polished thin sections mounted on quartz slides using methods to limit sample exposure to water and ambient air. When not in use, thin-sections were stored under N2 (g) to limit oxidation. Thin sections were analyzed for X-ray diffraction at the X-ray Fluorescence Microprobe beamline \"XFM\", National Synchrotron Light Source II (NSLS II), Brookhaven National Laboratory, NY.\n\ncdm_data_type = Other\nVARIABLES:\nCruise (unitless)\nFile_name (unitless)\nSample_name (unitless)\nsample_descrip (Time, unitless)\nHydrotherml_vent_category (unitless)\nLocation (unitless)\nlatitude (Lat_dd, degrees_north)\nlongitude (Lon_dd, degrees_east)\ndepth_f (Depth_mbs, m)\nHdg (degrees)\nDate_collected (unitless)\nTime_collected (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n | BCO-DMO | bcodmo_dataset_937020_v2 | ||||||||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_937020_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_937020_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_937020_v1/ | public | [X-ray diffraction from seafloor sulfide deposits East Pacific Rise 9-10 North] - Synchrotron micro-probe X-ray diffraction data from seafloor sulfide deposits collected during cruise AT42-09 on the East Pacific Rise (EPR) in April 2019. (Collaborative Research: From hot to cold in the dark - shifts in seafloor massive sulfide microbial communities as physical and geochemical conditions change after venting ceases) | Synchrotron micro-probe X-ray diffraction data were collected for seafloor sulfide deposits. Seafloor sulfide mineral samples were collected from hydrothermally active chimneys and inactive off-axis massive sulfide deposits at East Pacific Rise (EPR) 9.50°N in 2019-2021 on cruise AT42-09. Samples were collected using the HOV Alvin. Samples were placed in a positive-pressure glove bag flushed with N2 (g), sparged with N2, heat-sealed into mylar bags containing Anaeropaks, and stored at -20°C.\n\nEpoxy embedded petrographic thin sections were created using these samples. Subsamples were dried for 24 hours under N2 (g), vacuum embedded in epoxy resin (Struers EpoFix Resin, 1L kit: Part #40200030) following manufacturer's guidelines, and cured under N2 (g) for 24 hours. Each epoxy-embedded sample was pre-cut using a wafering saw then sent to Spectrum Petrographics, Inc. (Washington, USA) for preparation as 30 micron thick, double-polished thin sections mounted on quartz slides using methods to limit sample exposure to water and ambient air. When not in use, thin-sections were stored under N2 (g) to limit oxidation. Thin sections were analyzed for X-ray diffraction at the X-ray Fluorescence Microprobe beamline \"XFM\", National Synchrotron Light Source II (NSLS II), Brookhaven National Laboratory, NY.\n\ncdm_data_type = Other\nVARIABLES:\nCruise (unitless)\nFile_name (unitless)\nSample_name (unitless)\nsample_descrip (Time, unitless)\nHydrotherml_vent_category (unitless)\nLocation (unitless)\nlatitude (Lat_dd, degrees_north)\nlongitude (Lon_dd, degrees_east)\ndepth_f (Depth_mbs, m)\nHdg (degrees)\nDate_collected (unitless)\nTime_collected (unitless)\ntime (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_937020_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_937020_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_937020_v1/index.htmlTable | https://www.bco-dmo.org/dataset/937020
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_937020_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_937020_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_937020_v1 |