Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_745527.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_745527/ | public | [18S rRNA gene tag sequences from DNA and RNA] - NCBI accession metadata for 18S rRNA gene tag sequences from DNA and RNA from samples collected in coastal California in 2013 and 2014 (Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series) | Raw DNA and RNA V4 tag sequences include spatially and temporally distinct samples from coastal California. Samples were collected in Niskin bottles with a CTD rosette at the San Pedro Ocean Time-series (SPOT) between April of 2013 and January of 2014. This dataset contains sequence data accession numbers and metadata for the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database (SRA Study ID: SRP070577, BioProject: PRJNA311248).\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nsample_name (unitless)\nSRA_run_ID (unitless)\nSRA_run_link (unitless)\nlibrary_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletpe2 (unitless)\nfilename2 (unitless)\ndepth2 (Depth, various)\nlatitude (degrees_north)\nlongitude (degrees_east)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_745527_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_745527/index.htmlTable | https://www.bco-dmo.org/dataset/745527
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_745527.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_745527&showErrors=false&email= | BCO-DMO | bcodmo_dataset_745527 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_847425_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_847425_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_847425_v1/ | public | [Acropora cervicornis bleaching sequences] - Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 (Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility) | This dataset contains information about sequences of coral the Acropora cervicornis collected from host colonies (genets) at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys, USA in August and September of 2015. The sequence data can be found in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under accession number SRP267474 with the associated BioProject PRJNA639601.\n\ncdm_data_type = Other\nVARIABLES:\nbioproject_accession (unitless)\nsample_name (unitless)\nSRA_run_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletype2 (unitless)\nfilename2 (unitless)\nsite (unitless)\ncollection_date (unitless)\nlat (degrees_north)\nlongitude (degrees_east)\nHost_organism (unitless)\ngenotype (unitless)\nbleach_status (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_847425_v1/index.htmlTable | https://www.bco-dmo.org/dataset/847425
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_847425_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_847425_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_847425_v1 | |||||
| log in | [IODP385 16S, metagenomes and metatranscriptomes] - Raw amplicon, metagenomic and metatranscriptomic data from R/V JOIDES Resolution IODP-385 Guaymas Basin Tectonics and Biosphere expedition between September and November 2019 (Collaborative Research: Hydrothermal Fungi in the Guaymas Basin Hydrocarbon Ecosystem) | International Ocean Discovery Program Expedition 385 (IODP385) drilled organic-rich sediments and intruded sills in the off-axis region and axial graben of the northern spreading segment of Guaymas Basin, Gulf of California. Guaymas Basin is characterized by high heat flow and magmatism in the form of sill intrusions into sediments, which extends tens of kilometers off axis. Sill intrusions provide transient heat sources that mobilize buried sedimentary carbon and drive hydrothermal circulation. The resulting thermal and geochemical gradients shape abundance, composition, and activity of the deep subsurface biosphere of the basin. \n\nAmong the aims of IODP385 was to examine the subsurface biosphere of Guaymas Basin and its responses and adaptations to hydrothermal conditions. Using high-throughput 16S ribosomal nucleic acid sequencing we examined linkages and feedbacks between mineral composition, temperature, geochemistry, and microbial populations. The metagenomic analyses of the hydrothermally heated, sediment layers of Guaymas Basin examined the distribution and activity patterns of bacteria and archaea along thermal, geochemical and cell count gradients. Analyses of gene expression of subsurface bacteria and archaea provided insights into their physiological adaptations to in situ subsurface conditions. \n\nAll available datasets can be found in the the National Center for Biotechnology Information (NCBI) GenBank database under the Bioproject accession number PRJNA909197.\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (unitless)\nSRA_Run_ID (unitless)\nBioSample (unitless)\nAssayType (unitless)\nAssay (unitless)\nAvgSpotLen (unitless)\nBases (unitless)\nBioSampleModel (unitless)\nBytes (unitless)\n... (27 more variables)\n | BCO-DMO | bcodmo_dataset_994734_v1 | ||||||||||||
| log in | [Sponge Coral Picoplankton Incubation Experiment - NCBI] - Microbiome profiling of bacterioplankton communities on sponge excurrent water, coral exudate water, and surface reef water. (Collaborative Research: The Influence of Sponge Holobiont Metabolism on Coral Reef Dissolved Organic Matter and Reef Microorganisms) | Sponge exhalent water was collected from Looe Key reef, coral exudates water was collected from a coral incubation at Mote Marine lab, and ambient reef water was collected from Looe Key Reef surface water. All seawater was 0.2 um filtered to use as media in 2L bottles for an incubation experiment. Inoculum from reef surface water (1.6 um filtered) was used for the incubation. Bottles were incubated in the dark for 48 hours and samples were taken at the start (T0) and end (T48) for nutrient and microbiome analysis.\n\ncdm_data_type = Other\nVARIABLES:\nBioproject_Accession (unitless)\nBiosample_accession (unitless)\nSample_Name (unitless)\nSRA_run_ID (unitless)\nSRA_run_link (unitless)\nSPUID (unitless)\nOrganism (unitless)\nTax_ID (unitless)\nlibrary_ID (unitless)\nSRA_study_ID (unitless)\nSRA_title (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\nlibrary_layout (unitless)\nplatform (unitless)\ninstrument_model (unitless)\ndesign_description (unitless)\nfiletype (unitless)\nfilename (unitless)\nfiletype2 (unitless)\nfilename2 (unitless)\n... (4 more variables)\n | BCO-DMO | bcodmo_dataset_964182_v1 |