Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911008_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911008_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_911008_v1/ | public | [Diatom cultures used to generate DNA reference library] - Diatom cultures used to generate DNA reference library from samples collected from sites in Alpena, Michigan and Palm Coast, Florida between July 2021 & 2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes) | These data are the information for each of the cultures generated from samples collected from three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Data are for cultures sequenced using Sanger sequencing and include taxonomic identification, location and water parameter information from samples used to develop the cultures, and growth medium.\nEach of these cultures was developed from high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats. Sequences from these cultures contribute to tying molecular data to morphologically identified isolates, providing a bridge between these two data types that can be used to improve metabarcoding analyses.\n\ncdm_data_type = Other\nVARIABLES:\nNCBI_Accession (unitless)\nCulture_ID (unitless)\nGenus (unitless)\nSpecies (unitless)\nVariety (unitless)\nCollection_ID (unitless)\nMedia (unitless)\nCollection_Date (Month/Day/Year)\nLocation (unitless)\nSample_Type (unitless)\nLat (degrees_north)\nlongitude (Long, degrees_east)\nTemp (Celsius (°C))\nCond (Microsiemens / centimeter (μS/cm))\nTDS (Grams/liter (g/L))\npH (unitless)\nORP (Millivolts (mV))\nNTU (Nephelometric Turbidity Units (NTU))\nODO (Percentage saturation)\n... (6 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_911008_v1/index.htmlTable | https://www.bco-dmo.org/dataset/911008
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_911008_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_911008_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_911008_v1 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911441_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911441_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_911441_v1/ | public | [Samples Sequenced for Metabarcoding] - Cyanobacterial and diatom samples collecteced between April and September 2022, and sequenced for metabarcodig of 16S and rbcL. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes) | These data are the sample information for each of the samples collected for metabarcoding of 16S and rbcL to describe Cyanobacterial and diatom diversity, respectively, in three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Sample data are for sequenced samples and include their associated water parameter information that was collected simultaneously.\nEach of these sites are high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats, and further explored the bacterial communities as well. Our results provide novel information on microbial mat community composition, and present evidence that microbial biogeography influences these unique communities.\n\ncdm_data_type = Other\nVARIABLES:\nSampleID (unitless)\nCollection_ID (unitless)\nCollection_Date (unitless)\nLocation (unitless)\nLat (degrees_north)\nlongitude (Long, degrees_east)\nSample_Type (unitless)\nTemp (Celsius (°C))\nCond (Microsiemens / centimeter (μS/cm))\nTDS (Grams/liter (g/L))\npH (unitless)\nNTU (Nephelometric Turbidity Units (NTU))\nODO (Percentage saturation)\nODO_mg_L (Milligrams/liter (mg/L))\nCl_mg_L (Milligrams/liter (mg/L))\nSO4_mg_L (Milligrams/liter (mg/L))\nNO3_N_mg_L (Milligrams/liter (mg/L))\nSi_mg_L (Milligrams/liter (mg/L))\nSRP_P_mg_L (Milligrams/liter (mg/L))\nNCBI_BioProject (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_911441_v1/index.htmlTable | https://www.bco-dmo.org/dataset/911441
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_911441_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_911441_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_911441_v1 |