Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739077 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_739077.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_739077/ | public | [Community 16S rRNA gene sequences] - Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016 (Vibrio as a model microbe for opportunistic heterotrophic response to Saharan dust deposition events in marine waters) | Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016\n\ncdm_data_type = Other\nVARIABLES:\nBioProject (Bio Project, unitless)\nstudy (unitless)\nsample_description (unitless)\nyear (unitless)\nnum_sequences (unitless)\nNCBI_link (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_739077/index.htmlTable | https://www.bco-dmo.org/dataset/739077
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_739077.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_739077&showErrors=false&email= | BCO-DMO | bcodmo_dataset_739077 | |||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_713636.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_713636 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_713636.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_713636/ | public | [Florida Straights 2015 MOC1 Larval Fish Counts] - Counts of larval fishes collected by a 1m2 Multiple Opening Closing Net and Environmental Sampling System (MOCNESS; MOC1) in a subtropical, pelagic environment from R/V F.G. Walton Smith cruise WS15161 in June 2015 (Spatial variability of larval fish in relation to their prey and predator fields: Patterns and interactions from cm to 10s of km in a subtropical, pelagic environment) | Counts of larval fishes collected by a 1m2 Multiple Opening Closing Net and Environmental Sampling System (MOCNESS; MOC1) in a subtropical, pelagic environment from R/V F.G. Walton Smith cruise WS15161 in June 2015.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_name (unitless)\ncruise_id (unitless)\nstudy (unitless)\nstation (unitless)\ntow_type (unitless)\nnet (unitless)\ndate (unitless)\ntime_open (unitless)\ntime_closed (unitless)\ndepth_open (Depth, meters (m))\ndepth_close (Depth, meters (m))\ntow_vol (cubic meters (m^3))\nlarval_fish_count (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nlat_end (Latitude, decimal degrees)\nlon_end (Longitude, decimal degrees)\ntime (ISO Date Time Start UTC, seconds since 1970-01-01T00:00:00Z)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_713636_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_713636/index.htmlTable | https://www.bco-dmo.org/dataset/713636
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_713636.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_713636&showErrors=false&email= | BCO-DMO | bcodmo_dataset_713636 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_986580_v1 | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_986580_v1/ | public | [Headwater Terrestrial Organic Matter] - Impacts of Terrestrial Organic Matter on Methanogenic Archaea in Littoral and Pelagic Sediments of the Mississippi River Headwaters from June to September 2020 (Cyanos Great Lakes Project) (Collaborative Research: Cyanobacteria, Nitrogen Cycling, and Export Production in the Laurentian Great Lakes) | Terrestrial organic matter (tOM) plays a key role in aquatic ecosystems, influencing carbon cycling and greenhouse gas emissions. Here, we investigate how tOM affects methane production in littoral and pelagic sediments from the Mississippi River headwaters using a controlled microcosm approach. Contrary to expectations, tOM additions consistently enhanced methane production across both sediment types, with no significant differences between littoral and pelagic zones. Methane generation was mediated by specific sediment microorganisms—primarily methanogens and lignocellulose-degrading bacteria—which exhibited similar responses across habitats. \n\nSequencing data associated with this paper is available on NCBI through the project PRJNA1164797: Impacts of Terrestrial Organic Matter on Methanogenic Archaea in Littoral and Pelagic Sediments of the Mississippi River Headwater.\n\nOur results highlight the contribution of cytochrome-containing methanogens and their syntrophic interactions with fermentative bacteria, underscoring the importance of microbial community composition in regulating sediment methane dynamics. These findings suggest that increasing tOM loads to freshwater systems could have broader implications for methane emissions, driven by specific microbial interactions.\n\ncdm_data_type = Other\nVARIABLES:\naccession (unitless)\nstudy (unitless)\nobject_status (unitless)\nbioproject_accession (unitless)\nbiosample_accession (unitless)\nsample_name (unitless)\nlibrary_ID (unitless)\ntitle (unitless)\nlibrary_strategy (unitless)\nlibrary_source (unitless)\nlibrary_selection (unitless)\n... (9 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_986580_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/986580
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_986580_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_986580_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_986580_v1 | ||||||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_930084_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_930084_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_930084_v1/ | public | [Kāneʻohe Bay Time-series - microbial community] - Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, Hawaiʻi (Population genomics and ecotypic divergence in the most dominant lineage of marine bacteria) | These data include temperature, pH, salinity, chlorophyll a concentrations, cellular abundances of Prochlorococcus, Synechococcus, photosynthetic picoeukaryotes, and heterotrophic bacteria, and 16S ribosomal RNA gene amplicon libraries from 200 surface seawater samples collected as part of the Kāneʻohe Bay Time-series (KByT). Near-monthly sampling of surface seawater was conducted between August 2017 to June 2019 at 10 sites within coastal waters of Kāneʻohe Bay, Oʻahu, Hawaiʻi and in the adjacent offshore. Instruments used were a YSI 6,600 sonde, a Turner 10AU fluorometer, an EPICS ALTRA flow cytometer, and an Illumina MiSeq v2 platform.\n\nThese data characterize the partitioning of microbial communities across sharp physiochemical gradients in surface seawaters connecting nearshore and offshore waters in the tropical Pacific. This study provides evidence for the ecological differentiation of SAR11 marine bacteria across nearshore to offshore waters in the tropical Pacific and further increases our understanding of how SAR11 genetic diversity partitions into distinct ecological units. Data were collected by Sarah J. Tucker, Kelle C. Freel, Elizabeth A. Monaghan, Clarisse E. S. Sullivan, Oscar Ramfelt, Yoshimi M. Rii, and Michael S. Rappé.\n\ncdm_data_type = Other\nVARIABLES:\nSample_ID (unitless)\ncollection_date (unitless)\ndepth (m)\nenv_broad_scale (unitless)\nenv_local_scale (unitless)\nenv_medium (unitless)\ngeo_loc_name (unitless)\nlatitude (degrees_north)\nlongitude (degrees_east)\nSite_name (unitless)\nchlorophyll_a_ug_per_L (micrograms per Liter)\nph (no unit)\nsalinity (ppt)\n... (21 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_930084_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_930084_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_930084_v1/index.htmlTable | https://www.bco-dmo.org/dataset/930084
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_930084_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_930084_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_930084_v1 | |||
| https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_769969 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_769969.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_769969/ | public | [Oyster Cohort Genetics] - DNA microsatellite alleles for hatchery-produced oyster cohorts (CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems) | DNA microsatellite alleles for hatchery-produced oyster cohorts.\n\ncdm_data_type = Other\nVARIABLES:\nSTUDY (unitless)\nPOPULATION (unitless)\nSAMPLE_ID (unitless)\nCvi4313E_a (Cvi4313 E A, bp (base pairs))\nCvi4313E_b (Cvi4313 E B, bp (base pairs))\nRUCV73_a (bp (base pairs))\nRUCV73_b (bp (base pairs))\nRUCV74_a (bp (base pairs))\nRUCV74_b (bp (base pairs))\nCvi1i24b_a (bp (base pairs))\nCvi1i24b_b (bp (base pairs))\nCvi2i23_a (bp (base pairs))\nCvi2i23_b (bp (base pairs))\nRUCV1_a (bp (base pairs))\nRUCV1_b (bp (base pairs))\nCvi11_a (bp (base pairs))\nCvi11_b (bp (base pairs))\nRUCV66_a (bp (base pairs))\nRUCV66_b (bp (base pairs))\nCvi9_a (bp (base pairs))\nCvi9_b (bp (base pairs))\nCvi13_a (bp (base pairs))\nCvi13_b (bp (base pairs))\nCvi2k14_a (bp (base pairs))\nCvi2k14_b (bp (base pairs))\nCvi2j24_a (bp (base pairs))\nCvi2j24_b (bp (base pairs))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_769969/index.htmlTable | https://www.bco-dmo.org/dataset/769969
| https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_769969.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_769969&showErrors=false&email= | BCO-DMO | bcodmo_dataset_769969 |