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griddap | Subset | tabledap | Make A Graph | wms | files | Accessible | Title | Summary | FGDC | ISO 19115 | Info | Background Info | RSS | Institution | Dataset ID | |
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https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700773 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700773.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_700773/ | public | [13C incubation cell counts] - Counts of Prochlorococcus from on-deck incubations with 13C-bicarbonate as part of DNA-SIP experiments conducted on Hawaii Ocean Time-series (HOT) cruises, HOT283 and HOT288 in 2016 (Microbial ecology of coexisting ecotypes: Are all Prochlorococcus equal?) | Counts of Prochlorococcus from on-deck incubations with 13C-bicarbonate as part of DNA-SIP experiments conducted on Hawaii Ocean Time-series (HOT) cruises, HOT283 and HOT288 in 2016.\n\ncdm_data_type = Other\nVARIABLES:\ncruise (unitless)\nincubation (unitless)\ndepth2 (Depth, unitless)\ntimepoint (hours)\nreplicate (unitless)\nprochlorococcus (cells per milliliter (cells/mL))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_700773/index.htmlTable | https://www.bco-dmo.org/dataset/700773![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_700773.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_700773&showErrors=false&email= | BCO-DMO | bcodmo_dataset_700773 | |||||
log in | [A scandium incubation experiment during the PUPCYCLE I cruise in the California Current System in 2019] - Dissolved and particulate Fe and Sc concentrations, chlorophyll, nutrients from a scandium incubation experiment during the PUPCYCLE I R/V Oceanus cruise 1905B in the California Current System in 2019 (CAREER: An integrated molecular and physiological approach to examining the dynamics of upwelled phytoplankton in current and changing oceans) | We performed an incubation experiment with added dissolved scandium and/or iron in waters sampled in the California Current System during the PUPCYCLE I cruise in 2019 with Chief Scientist Adrian Marchetti. PUPCYCLE I (Phytoplankton response to the UPwelling CYCLE) took place in summer 2019 onboard the R/V Oceanus (OC 1905b). Water for the incubation was collected from 15 m just off the Big Sur coast 2 June 2019. This was in a region with an extremely narrow shelf. There were five total treatments run in triplicate: control (no addition), +5 nmol/kg dissolved Fe, +5 nmol/kg dissolved Sc, +5 nmol/kg dissolved Fe and +5 nmol/kg dissolved Sc, and filtered seawater with +5 nmol/kg dissolved Fe and +5 nmol/kg dissolved Sc. After 24 hours incubating, the incubation was harvested and analyzed for chlorophyll, nutrients, and dissolved and particulate Fe and Sc concentrations. The effort was to investigate similarities and differences in the oceanic chemical cycling of Fe and Sc.\n\ncdm_data_type = Other\nVARIABLES:\nLabel (unitless)\nTimepoint (hours)\nTreatment (unitless)\nReplicate (unitless)\nChl_gt_5um (micrograms per liter (ug/L))\nChl_gt_0pt7um (micrograms per liter (ug/L))\nNO3 (micromolar (uM))\nPO4 (micromolar (uM))\nSiO2 (micromolar (uM))\ndissolved_Fe (nanomoles per kilogram (nmol/kg))\ndissolved_Sc (picomoles per kilogram (pmol/kg))\ndissolved_Sc_flag (unitless)\n | BCO-DMO | bcodmo_dataset_940093_v1 | ||||||||||||
log in | [Acropora cervicornis 16S rRNA sequence metadata: nutrient- and disease-exposed] - Acropora cervicornis 16S rRNA sequence metadata: nutrient- and disease-exposed from samples collected at Mote Marine Laboratory in situ nursery from June to July 2022 (Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility) | In the summer of 2022, 20 ramets each of the Acropora cervicornis genotypes ML-AC-36 and ML-AC-46 were collected from Mote's in situ coral nursery and subjected to three weeks of elevated nitrate, ammonium, and phosphate in the form of a slow-release fertilizer. The duration and concentration of this exposure were selected based on prior experiments conducted at Mote Marine Laboratory, which were found to alter microbial community profiles and growth rates in A. cervicornis (Klinges et al., 2022, 2023). During experiment, corals were held in 2-gallon aquaria with 5 corals per aquarium. As Mote Marine Laboratory's experimental aquarium system is plumbed into nearshore coastal water and thus has a higher nutrient load than the reef, an additional subset of 18 ramets of each genotype was collected from Mote's in situ coral nursery immediately prior to disease challenge to evaluate the impact of nearshore water on disease response. All ramets in the disease group were subjected to disease challenge in the form of a tissue homogenate produced from diseased fragments of random genotypes of A. cervicornis. Ramets in a comparative unexposed group were exposed to a homogenate produced from healthy fragments of random genotypes of A. cervicornis. We collected 190 samples for 16S rRNA sequencing, including prior to nutrient exposure, nutrient-exposed and -unexposed corals prior to disease challenge, and at several timepoints throughout disease exposure capturing both diseased and apparently healthy phenotypes. We additionally collected numerous samples for measurements of immune-related proteins. In brief, we found that disease challenge significantly impacted microbial communities, leading to significant differences in community composition between disease-exposed samples that developed disease, exposed samples that resisted disease, and healthy unexposed controls. The taxa Algicola, Halarcobacter, Saprospira, Shimia, Tenacibaculum, Thalassolituus, and Thalassotalea increased in abundance in samples that developed disease. Of the genotypes chosen for the experiment, one genotype was dominated by the putative parasite Aquarickettsia. We found that both genotypes were susceptible to disease, in contrast to previous results indicating that genotypes with low abundance of Aquarickettsia and relatively diverse microbiomes were disease-resistant. Raw sequence reads have been submitted to SRA under PRJNA1024453 with an embargo until publication.\n\ncdm_data_type = Other\nVARIABLES:\nNCBI_Project (unitless)\nsample_name (unitless)\n... (30 more variables)\n | BCO-DMO | bcodmo_dataset_924465_v1 | ||||||||||||
log in | [Acropora cervicornis protein measurements: nutrient- and disease-exposed] - Acropora cervicornis protein measurements: nutrient- and disease-exposed from samples collected at Mote Marine Laboratory in situ nursery from June to July 2022 (Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility) | In the summer of 2022, 20 ramets each of the Acropora cervicornis genotypes ML-AC-36 and ML-AC-46 were collected from Mote's in situ coral nursery and subjected to three weeks of elevated nitrate, ammonium, and phosphate in the form of a slow-release fertilizer. The duration and concentration of this exposure were selected based on prior experiments conducted at Mote Marine Laboratory, which were found to alter microbial community profiles and growth rates in A. cervicornis (Klinges et al., 2022, 2023). During experiment, corals were held in 2-gallon aquaria with 5 corals per aquarium. As Mote Marine Laboratory's experimental aquarium system is plumbed into nearshore coastal water and thus has a higher nutrient load than the reef, an additional subset of 18 ramets of each genotype was collected from Mote's in situ coral nursery immediately prior to disease challenge to evaluate the impact of nearshore water on disease response. All ramets in the disease group were subjected to disease challenge in the form of a tissue homogenate produced from diseased fragments of random genotypes of A. cervicornis. Ramets in a comparative unexposed group were exposed to a homogenate produced from healthy fragments of random genotypes of A. cervicornis. To evaluate the effect of Aquarickettsia infection; nutrient enrichment; disease exposure; and the combination of these factors on coral immune function, a number of immune related proteins and antioxidants were measured using microplate assays from a total of 55 samples taken prior to disease exposure and following disease exposure as corals either resisted or developed disease. Total host protein and the antioxidant superoxide dismutase were found to be higher in healthy corals regardless of genotype or nutrient enrichment. Phenoloxidase and prophenoloxidase were higher in concentration in diseased samples compared to healthy samples. Disease-exposed but apparently healthy corals had higher superoxide dismutase, prophenoloxidase, and peroxidase activity than either healthy unexposed corals or diseased corals despite total protein concentrations that were lower than healthy unexposed corals.\n\ncdm_data_type = Other\nVARIABLES:\nFull_ID (unitless)\nDate (unitless)\nTP (mg)\nPOX (ΔAbs470nm)\nNormalized_POX (ΔAbs470nm/mg protein)\n... (17 more variables)\n | BCO-DMO | bcodmo_dataset_924466_v1 | ||||||||||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742235.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742235 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742235.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_742235/ | public | [ARK27-3: Bulk FLA hydrolysis rates] - Microbial enzyme activities: polysaccharide hydrolase activities in bulk seawater samples from the RV\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes polysaccharide hydrolysis rates measured in bulk (not filter-fractionated) seawater. Links to archived CTD data are also provided.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep3_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\ncomments (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_742235_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_742235/index.htmlTable | https://www.bco-dmo.org/dataset/742235![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_742235.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_742235&showErrors=false&email= | BCO-DMO | bcodmo_dataset_742235 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742780.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742780 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742780.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_742780/ | public | [ARK27-3: Bulk MCA hydrolysis rates] - Microbial enzyme activities: peptidase activities in bulk seawater samples from the RV\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes peptidase activities measured in bulk (not filter-fractionated) seawater. Links to archived CTD data are also provided. Five substrates linked to a 7-amido-4-methyl coumarin (MCA) fluorophore, one amino acid \\u2013 leucine \\u2013 and four oligopeptides \\u2013 the chymotrypsin substrates alanine-alanine-phenylalanine (AAF) and alanine-alanine-proline-phenylalanine (AAPF), and the trypsin substrates glutamine-alanine-arginine (QAR) and glutamic acid-gylcine-arginine (EGR) \\u2013 were used to measure exo- and endo-acting peptidase activities, respectively.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth_m (Depth, meters)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep3_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\ncomments (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_742780_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_742780/index.htmlTable | https://www.bco-dmo.org/dataset/742780![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_742780.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_742780&showErrors=false&email= | BCO-DMO | bcodmo_dataset_742780 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742919.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742919 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742919.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_742919/ | public | [ARK27-3: GF FLA hydrolysis rates] - Microbial enzyme activities: polysaccharide hydrolase activities of gravity filtered seawater samples from the RV\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes polysaccharide hydrolysis rates measured in samples from gravity filtered seawater. Links to archived CTD data are also provided.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\nfilter_um (microns)\ncomments (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_742919_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_742919/index.htmlTable | https://www.bco-dmo.org/dataset/742919![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_742919.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_742919&showErrors=false&email= | BCO-DMO | bcodmo_dataset_742919 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742967.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742967 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_742967.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_742967/ | public | [ARK27-3: GF MCA hydrolysis rates] - Microbial enzyme activities: peptidase activities of gravity-filtered seawater samples from the RV\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes microbial peptidase hydrolysis rates measured on particles collected from gravity filtered seawater. Links to archived CTD data are also provided. Five substrates linked to a 7-amido-4-methyl coumarin (MCA) fluorophore, one amino acid \\u2013 leucine \\u2013 and four oligopeptides \\u2013 the chymotrypsin substrates alanine-alanine-phenylalanine (AAF) and alanine-alanine-proline-phenylalanine (AAPF), and the trypsin substrates glutamine-alanine-arginine (QAR) and glutamic acid-gylcine-arginine (EGR) \\u2013 were used to measure exo- and endo-acting peptidase activities, respectively.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\nfilter_um (microns)\ncomments (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_742967_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_742967/index.htmlTable | https://www.bco-dmo.org/dataset/742967![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_742967.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_742967&showErrors=false&email= | BCO-DMO | bcodmo_dataset_742967 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743018.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743018 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743018.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_743018/ | public | [ARK27-3: Sediment MCA hydrolysis rates] - Microbial enzyme activities: peptidase activities of sediment samples from the RV\\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes peptidase hydrolysis rates from sediments to measure microbial enzyme activities. Links to archived CTD data are also provided. Five substrates linked to a 7-amido-4-methyl coumarin (MCA) fluorophore, one amino acid \\u2013 leucine \\u2013 and four oligopeptides \\u2013 the chymotrypsin substrates alanine-alanine-phenylalanine (AAF) and alanine-alanine-proline-phenylalanine (AAPF), and the trypsin substrates glutamine-alanine-arginine (QAR) and glutamic acid-gylcine-arginine (EGR) \\u2013 were used to measure exo- and endo-acting peptidase activities, respectively.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep3_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\ncomments (unitless)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_743018_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_743018/index.htmlTable | https://www.bco-dmo.org/dataset/743018![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_743018.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_743018&showErrors=false&email= | BCO-DMO | bcodmo_dataset_743018 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_963393_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_963393_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_963393_v1/ | public | [Combined Selfish Bacteria Cell Counts 2023-2024] - Cell counts exhibiting 'Selfish' uptake in the Western North Atlantic, in Danish Coastal Seawater, and Abyssopelagic Waters off the Eastern Coast of Japan under varying hydrostatic pressures, 2023-2024 (Collaborative Research: Pressure effects on microbially-catalyzed organic matter degradation in the deep ocean) | Heterotrophic bacteria and archaea (here: microbes) are critical drivers of the ocean's biogeochemical cycles, active throughout the depth of the ocean. Their capabilities and limitations help determine the rates and locations at which carbon and nutrients are regenerated, as well as the extent to which organic matter is preserved (Hedges 1992). In the deep ocean, at bathy- and abyssopelagic depths (ca. 1000-6000m), these communities are dependent upon the sinking flux of particulate organic matter (POM) from the surface ocean (Bergauer et al. 2018). This dependence means that heterotrophic microbial communities must produce the extracellular enzymes required to solubilize and hydrolyze high molecular weight (HMW) POM to sizes substrates suitable for cellular uptake. A recent global-scale investigation of deep-sea microbes in fact found that the genetic potential for exported (extracellular) enzymes among bacteria in deep waters was far greater than for communities in surface or mesopelagic waters (Zhao et al. 2020). We have new evidence that a substantial fraction of bacteria in bottom water from the North Atlantic Ocean use a specialized set of extracellular enzymes to rapidly take up HMW polysaccharides (Giljan et al. 2022), a substrate processing mechanism that would not be detected with the low molecular weight substrates used in most prior studies of microbial activity in the deep ocean (Nagata et al. 2010).\n \nThrough our collaboration with the Danish Center for Hadal Research, we were able to use pressurization systems and in situ specialized equipment to investigate the effects of pressures characteristic of bathy- and abyssopelagic depths on microbial communities and their extracellular enzymes in the open North Atlantic Ocean, in Danish Coastal Seawater, and abyssopelagic waters off the Eastern Coast of Japan. \n \nHere we present, in collaboration with colleagues from the Max Planck Institute for Marine Microbiology, the detection and quantification of microbial cells exhibiting selfish uptake behavior of fluorescently-labeled HMW polysaccharides. This dataset includes sample collection metadata, environmental variables, experimental variables, the number of cells detected exhibiting 'selfish' uptake, and total cellular abundance.\n\ncdm_data_type = Other\nVARIABLES:\ndeployment (unitless)\n... (22 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_963393_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_963393_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_963393_v1/index.htmlTable | https://osprey.bco-dmo.org/dataset/963393![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_963393_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_963393_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_963393_v1 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719712.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719712 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_719712.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_719712/ | public | [EN556 bulk water polysaccharide hydrolysis rates] - Hydrolysis rates from bulk water sample incubations from R/V Endeavor cruise EN556 in 2015 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes polysaccharide hydrolysis rates to measure microbial enzyme activities and bacterial productivity.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\nstation (unitless)\ncast (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomol monosaccharide/liter/hour)\nrep2_rate (nanomol monosaccharide/liter/hour)\nrep3_rate (nanomol monosaccharide/liter/hour)\naverage (nanomol monosaccharide/liter/hour)\nstd_dev (nanomol monosaccharide/liter/hour)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_719712/index.htmlTable | https://www.bco-dmo.org/dataset/719712![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_719712.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_719712&showErrors=false&email= | BCO-DMO | bcodmo_dataset_719712 | ||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717503.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717503 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717503.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_717503/ | public | [EN556 gravity filtered particle-associated bacterial production] - Bacterial protein production on particles obtained by gravity filtration of water collected on RV/Endeavor EN556 (Patterns of activities project) (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | Experiments on (operationally defined) particles were carried out by gravity-filtering water through 3 micron pore size filters. Bacterial protein production was measured from 3H-leucine incorporation by heterotrophic bacteria. See Niskin Bottle and Cast List EN556 to link specific casts and bottles to each experiment: https://www.bco-dmo.org/dataset/717427.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\ncast (unitless)\nstation (unitless)\ndepth_id (Depth, unitless)\ndepth (m)\nlat_degdecmin (Latitude, degrees and decimal minutes)\nlon_degdecmin_W (Longitude, degrees and decimal minutes)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntemp (Temperature, degrees Celsius)\nsalinity (Sea Water Practical Salinity, per mil)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nLeu_3H_rep_1 (Leu 3 H Rep 1, picomol leucine/liter/hour)\nLeu_3H_rep_2 (Leu 3 H Rep 2, picomol leucine/liter/hour)\nLeu_3H_rep_3 (Leu 3 H Rep 3, picomol leucine/liter/hour)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_717503_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_717503/index.htmlTable | https://www.bco-dmo.org/dataset/717503![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_717503.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_717503&showErrors=false&email= | BCO-DMO | bcodmo_dataset_717503 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_720307.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_720307 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_720307.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_720307/ | public | [EN556 gravity filtered peptidase hydrolysis rates - plate reader] - Hydrolysis rates from incubations on particles obtained by gravity filtration of water collected on RV/Endeavor EN556 (Patterns of activities project) (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes polysaccharide hydrolysis rates to measure microbial enzyme activities and bacterial productivity at multiple time points. The water was from gravity filtration samples.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\nstation (unitless)\ncast (unitless)\ndepth_no (Depth, unitless)\ndepth (m)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomol monosaccharide/liter/hour)\nrep2_rate (nanomol monosaccharide/liter/hour)\naverage (nanomol monosaccharide/liter/hour)\nstd_dev (nanomol monosaccharide/liter/hour)\nfilter_um (microns)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_720307/index.htmlTable | https://www.bco-dmo.org/dataset/720307![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_720307.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_720307&showErrors=false&email= | BCO-DMO | bcodmo_dataset_720307 | ||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717562.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717562 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717562.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_717562/ | public | [EN556 LV incubations: DOC, bacterial cell concentration, and bacterial production] - Large volume incubation: DOC, bacterial cell concentration and production from RV/Endeavor EN556, June 2015 (Patterns of activities project) (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | Bacterial protein production, cell counts, and DOC were measured in mesocosm incubations after half the mesocosms were amended with Thalasiosira. See Niskin Bottle and Cast List EN556 to link specific casts and bottles to each experiment: https://www.bco-dmo.org/dataset/717427.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\nstation (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\ndepth_id (Depth, unitless)\ndepth (m)\nlat_degdecmin (Latitude, degrees and decimal minutes)\nlon_degdecmin_W (Longitude, degrees and decimal minutes)\nlatitude (degrees_north)\nlongitude (degrees_east)\ncast (unitless)\ntemp (Temperature, degrees Celsius)\nsalinity (Sea Water Practical Salinity, per mil)\ntreatment (unitless)\nmeso_no (unitless)\nDOC_uM (DOC U M, micromolar)\ncells_per_mL (Cells Per M L, cells/milliliter)\nLeu_3H_rep_1 (Leu 3 H Rep 1, pico mol leucine/hour)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_717562_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_717562/index.htmlTable | https://www.bco-dmo.org/dataset/717562![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_717562.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_717562&showErrors=false&email= | BCO-DMO | bcodmo_dataset_717562 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717577.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717577 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717577.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_717577/ | public | [EN556 seawater measurements and initial conditions] - Measurements of nutrients, bacterial cell concentration and bacterial production from RV/Endeavor EN556, June 2015 (Patterns of activities project) (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | Nutrients, bacterial cell counts, and bacterial protein production as measured by 3H-leucine incorporation from the 'bulk water experiments'. Water was collected on EN556. See Niskin Bottle and Cast List EN556 to link specific casts and bottles to each experiment: https://www.bco-dmo.org/dataset/717427.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\nstation (unitless)\ncast (unitless)\ndepth_id (Depth, unitless)\ndepth (m)\nlat_degdecmin (Latitude, degrees and decimal minutes)\nlon_degdecmin_W (Longitude, degrees and decimal minutes)\nlatitude (degrees_north)\nlongitude (degrees_east)\ntemp (Temperature, degrees Celsius)\nsalinity (Sea Water Practical Salinity, per mil)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nNO2_NO3_uM (Mole Concentration Of Nitrate In Sea Water, micromolar)\nNH4_uM (Mole Concentration Of Ammonium In Sea Water, micromolar)\nPO4_uM (Mass Concentration Of Phosphate In Sea Water, micromolar)\nDOC_uM (DOC U M, micromolar)\ncells_per_mL (Cells Per M L, cells/milliliter)\nLeu_3H_rep_1 (Leu 3 H Rep 1, pico mol leucine/hour)\nLeu_3H_rep_2 (Leu 3 H Rep 2, pico mol leucine/hour)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_717577_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_717577/index.htmlTable | https://www.bco-dmo.org/dataset/717577![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_717577.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_717577&showErrors=false&email= | BCO-DMO | bcodmo_dataset_717577 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717495.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717495 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717495.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_717495/ | public | [EN584 LV polysaccharide hydrolysis rates] - Measurements of polysaccharide hydrolase activities in large volume mesocosm incubations RV/Endeavor EN584, July 2016 (Patterns of activities project) (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | Measurements of polysaccharide hydrolase activities in large volume mesocosm incubations RV/Endeavor EN584, July 2016. See Niskin Bottle and Cast List EN584 to link specific casts and bottles to each experiment: https://www.bco-dmo.org/dataset/717427.\n\ncdm_data_type = Other\nVARIABLES:\ncruise_id (unitless)\nstation (unitless)\ncast (unitless)\ndepth_id (Depth, unitless)\ndepth (m)\ntreatment (unitless)\nmeso_no (unitless)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomol monosaccharide/liter/hour)\nrep2_rate (nanomol monosaccharide/liter/hour)\nrep3_rate (nanomol monosaccharide/liter/hour)\naverage (nanomol monosaccharide/liter/hour)\nstd_dev (nanomol monosaccharide/liter/hour)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_717495/index.htmlTable | https://www.bco-dmo.org/dataset/717495![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_717495.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_717495&showErrors=false&email= | BCO-DMO | bcodmo_dataset_717495 | ||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717660.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717660 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_717660.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_717660/ | public | [Greenland experiment: microbial enzymatic activities] - Microbial enzymatic activities from seawater and from particle-associated seawater communities from Greenland, August 2015 (Patterns of activities project) (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | Bacterial activity as measured by hydrolysis rates from unfiltered seawater and particle-associated communities collected near shore in northeastern Greenland in August 2015.\n\ncdm_data_type = Other\nVARIABLES:\ntrip_id (unitless)\nsample_type (unitless)\nfilter_um (nanomol monomer/liter/hour)\nfluorophore (unitless)\nstation (unitless)\ncast (unitless)\ndepth_id (Depth, unitless)\ndepth (m)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomol monomer/liter/hour)\nrep2_rate (nanomol monomer/liter/hour)\nrep3_rate (nanomol monomer/liter/hour)\nrate_average (nanomol monomer/liter/hour)\nrate_std_dev (nanomol monomer/liter/hour)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_717660/index.htmlTable | https://www.bco-dmo.org/dataset/717660![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_717660.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_717660&showErrors=false&email= | BCO-DMO | bcodmo_dataset_717660 | ||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783581 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_783581.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_783581/ | public | [Hawaiian crustose coralline algae dissolved organic matter] - Fluorescent characteristics of the dissolved organic exudates of two species of crustose coralline algae in two water treatments and their effect on the microbial community cell count (Collaborative Research: Dissolved organic matter feedbacks in coral reef resilience: The genomic & geochemical basis for microbial modulation of algal phase shifts) | Fluorescent characteristics of the dissolved organic exudates of two species of crustose coralline algae (Hydrolithon reinboldii and Porolithon onkodes) in two water treatments (pre-filtered and unfiltered) and their effect on the microbial community cell count.\n\ncdm_data_type = Other\nVARIABLES:\nWater (unitless)\nInhabitant (unitless)\nReplicate (unitless)\nTimepoint (unitless)\nHours (hours)\nCells (cells per microliter (cells uL-1))\ndelta_Cells (cells per microliter (cells uL-1))\nSurface_Area (square centimeters (cm^2))\nUltra_Violet_Humic_like (Raman units of water (RU))\nMarine_Humic_like (Raman units of water (RU))\nVisible_Humic_like (Raman units of water (RU))\nTryptophan_like (Raman units of water (RU))\nTyrosine_like (Raman units of water (RU))\nPhenylalanine_like (Raman units of water (RU))\nFulvic_Acid_like (Raman units of water (RU))\nDOC (micromoles per liter (umol L-1))\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_783581/index.htmlTable | https://www.bco-dmo.org/dataset/783581![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_783581.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_783581&showErrors=false&email= | BCO-DMO | bcodmo_dataset_783581 | |||||
log in | [Particulate metals from the scandium incubation experiment on PUPCYCLE I in the California Current System in 2019] - Particulate metals from a scandium incubation experiment during the PUPCYCLE I R/V Oceanus cruise 1905B in the California Current System in 2019 (CAREER: An integrated molecular and physiological approach to examining the dynamics of upwelled phytoplankton in current and changing oceans) | We performed an incubation experiment with added dissolved scandium and/or iron in waters sampled in the California Current System during the PUPCYCLE I cruise in 2019 with Chief Scientist Adrian Marchetti. PUPCYCLE I (Phytoplankton response to the UPwelling CYCLE) took place in summer 2019 onboard the R/V Oceanus (OC 1905b). Water for the incubation was collected from 15 m just off the Big Sur coast 2 June 2019. This was in a region with an extremely narrow shelf. There were five total treatments run in triplicate: control (no addition), +5 nmol/kg dissolved Fe, +5 nmol/kg dissolved Sc, +5 nmol/kg dissolved Fe and +5 nmol/kg dissolved Sc, and filtered seawater with +5 nmol/kg dissolved Fe and +5 nmol/kg dissolved Sc. After 24 hours incubating, the incubation was harvested and analyzed for chlorophyll, nutrients, and dissolved and particulate Fe and Sc concentrations. The effort was to investigate similarities and differences in the oceanic chemical cycling of Fe and Sc.\n\ncdm_data_type = Other\nVARIABLES:\nLabel (unitless)\nTimepoint (hours)\nTreatment (unitless)\nReplicate (unitless)\nleachable_particulate_Fe (nanomoles per kilogram (nmol/kg))\nleachable_particulate_Sc (picomoles per kilogram (pmol/kg))\n | BCO-DMO | bcodmo_dataset_940088_v1 | ||||||||||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918220_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_918220_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_918220_v1/ | public | [qPCR assays] - Results from qPCR assays to quantify the abundance and photochemical performance of symbionts relative to coral cells in three coral species collected from colonies in southeast Florida in April and October 2019 before, during, and after heat stress tests (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications) | This dataset contains results from assays to quantify the abundance and photochemical performance of Breviolum, Cladocopium, and Durusdinium symbionts relative to coral cells in Montastraea cavernosa, Orbicella faveolata, and Siderastrea siderea corals collected from colonies in southeast Florida in April 2019 and in October 2019, before, during and after aquarium-based experimental heat stress tests. Bulk genomic DNA was extracted from tissue scrapings taken from 2.5cm diameter cores of corals and was used as a template for symbiont genus-specific qPCR assays. The resulting CT values were used to calculate the relative abundance of each symbiont genus within each coral core over the course of the heat stress. The photochemical efficiency of each coral core was also measured periodically throughout heat stress tests using an imaging pulse amplitude modulated (I-PAM) fluorometer. The publication based on these data is Buzzoni, et al. (2023) (DOI: 10.1007/s00338-023-02428-x).\n\ncdm_data_type = Other\nVARIABLES:\nSpecies (unitless)\nTreatment (unitless)\nCore (unitless)\nCollection_Latitude (degrees_north)\nlongitude (Collection_longitude, degrees_east)\nTimepoint (unitless)\nSym_Host (unitless)\nY2 (unitless)\nPropD (unitless)\nBatch (unitless)\nDate (unitless)\nColony (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_918220_v1/index.htmlTable | https://www.bco-dmo.org/dataset/918220![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_918220_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_918220_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_918220_v1 | |||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907028_v1 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_907028_v1.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_907028_v1/ | public | [RR2004 Bottle Data] - CTD-associated variables, bottle salinity measurements, oxygen titrations, nutrient analyses, biogeochemical/biological variables, and DIC/Freon chemistry variables from R/V Roger Revelle cruise RR2004 along the 150W meridian from 30S to 60S (Collaborative Research: Biogeochemical and Physical Conditioning of Sub-Antarctic Mode Water in the Southern Ocean) | These data are part of the NSF project \"Collaborative Research: Biogeochemical and Physical Conditioning of Sub-Antarctic Mode Water in the Southern Ocean\". Specifically, these are the discrete bottle data from cruise RR2004 aboard R/V Roger Revelle, which sailed from Honolulu, Hawaii on 26 December 2020 to the Southern Ocean and returned to Honolulu on 23 February 2021. The purpose of the project was to define the processes that condition Sub-Antarctic Mode Water (SAMW) formed at the Sub-Antarctic Front in the Southern Ocean. The cruise track was from 30 degrees South to 60 degrees South along the 150 degrees West meridian as well as an investigation of frontal boundaries and eddies further east (from 45S to 57S by ~145W). Bottle data were collected from CTD casts with tripped Niskin bottles on the CTD Rosette. Trace-metal-clean casts were performed using Niskin-X bottles suspended on Kevlar line and a trace-metal-clean block. \n\nThe data reported herein fall into several categories, A) CTD-associated variables, B) bottle salinity measurements, C) oxygen titrations and nutrient analyses, biogeochemical/biological variables, and D) DIC/Freon chemistry variables. Regarding the specific data, we first report CTD variables (salinity, temperature, potential temperature, density, dissolved oxygen, sound velocity, pressure, depth, conductivity, SeaBird-probe-derived oxygen concentrations, chlorophyll fluorescence, beam transmittance (660nm; %), backscattering, CTD PAR, and surface PAR reference. Next, results from bottle samples for salinity, lab oxygen titration, and nutrient concentrations (nitrate, phosphate, silicate, nitrite, and ammonium). The following biogeochemical and biological variables are presented: particulate organic carbon concentration (POC), particulate organic nitrogen (PON), and particulate inorganic carbon (PIC), concentration of detached coccoliths (given as birefringent singlets, doublets, triplets, or quadruplets, when viewed in a compound microscope with polarization optics), total coccolith concentration (the sum of singlets, doublets, triplets or quadruplets), concentration of birefringent plated coccolithophore cells, coccospheres or coccolith aggregates, planar area subtended by detached coccoliths or plated cells, concentration of biogenic silica, concentration of chlorophyll, phaeopigment and their sum. There are a suite of variables from FlowCAM measurements, mostly done on particles greater than 5 micrometers (um) in diameter: Particle size distribution function (PSDF) slope, standard error of PSDF slope, Y-intercept of the PSDF, R^2 of the PDF slope, F statistic of PSDF slope, total cell concentration per milliliter (mL), concentrations (in cells per mL) of small 0-4um diameter cells, 4-12um round cells, 4-12um diameter ovoid cells, dinoflagellates, ciliates, diatoms silicoflagellates, other unidentified cells, followed by percent of total cell concentrations and carbon biomass (using equations of Menden Deuer and Lessard) for the same cell categories. Carbon fixation rates are then presented for: ratio of calcification/photosynthesis, photosynthesis, calcification, standard deviation of photosynthesis and calcification measurements, chlorophyll concentration within incubation bottles, chlorophyll normalized photosynthesis, and calcification. Finally, corrected salinity (based on bottle salinity), corrected SeaBird oxygen values based on lab oxygen titrations, dissolved inorganic carbon (DIC) concentrations, total alkalinity and concentration of CFC12 and CFC11 freons are presented.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\n... (135 more variables)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_907028_v1_fgdc.xml | https://erddap.bco-dmo.org/erddap/metadata/iso19115/xml/bcodmo_dataset_907028_v1_iso19115.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_907028_v1/index.htmlTable | https://www.bco-dmo.org/dataset/907028![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_907028_v1.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_907028_v1&showErrors=false&email= | BCO-DMO | bcodmo_dataset_907028_v1 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718117 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_718117.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_718117/ | public | [SBDOM11 mini-remineralization expt.] - Dilution batch-culture bioassay (remineralization) experiments from SBDOM11 project cruise from R/V Point Sur PS1103 in the Santa Barbara Channel, May 2011 (SBDOM project, SBC LTER project) (Mechanisms controlling the production and fate of DOM during diatom blooms) | This dataset includes results from dilution batch-culture bioassay experiments reporting bacterial abundance, growth rates, barcode sequences and DOC were from the SBDOM 11 cruise in May 2011.\n\ncdm_data_type = Other\nVARIABLES:\nSample (unitless)\nsta_id (unitless)\nbottle (unitless)\nInitiation_date (unitless)\nInitiation_time (unitless)\nTimepoint (unitless)\nDate (unitless)\nDOC_sampling_time (unitless)\nDOC_Bottle_A (micromol/liter)\nDOC_A_st_dev (micromol/liter)\nDOC_Bottle_B (micromol/liter)\nDOC_B_st_dev (micromol/liter)\nBact_abun_sampling_time (unitless)\nBact_abun_A (cells/liter)\nBact_abun_B (cells/liter)\nDNA_sampling_time (unitless)\nPyrosequencing_barcode (unitless)\nmu_growth_A (cells/day)\nmu_growth_B (cells/day)\nBGE_A (unitless)\nBGE_B (unitless)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_718117/index.htmlTable | https://www.bco-dmo.org/dataset/718117![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_718117.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_718117&showErrors=false&email= | BCO-DMO | bcodmo_dataset_718117 | |||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_722560 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_722560.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_722560/ | public | [Sealed Oyster Aquarium 15N Tracer, 15N2 and N2O] - N2O, 15N2, 15N tissue tracer in oyster aquariums (Oyster Reef N2O Emission project) (Microbial Regulation of Greenhouse Gas N2O Emission from Intertidal Oyster Reefs) | N2O, 15N2, 15N tissue tracer in oyster aquariums\n\ncdm_data_type = Other\nVARIABLES:\nTimepoint (unitless)\nTime_Days (days)\nHours (hours)\nOA1_15N2 (OA1 15 N2, permil)\nOA1_N2O (OA1 N2 O, nM)\nOA1_O2 (mg/L)\nOA1_Del15N_Digestive (OA1 Del15 N Digestive, permil)\nOA1_Del15N_Meat (OA1 Del15 N Meat, permil)\nOA2_15N2 (OA2 15 N2, permil)\nOA2_N2O (OA2 N2 O, nM)\nOA2_O2 (mg/L)\nOA2_Del15N_Digestive (OA2 Del15 N Digestive, permil)\nOA2_Del15N_Meat (OA2 Del15 N Meat, permil)\nOA3_15N2 (OA3 15 N2, permil)\nOA3_N2O (OA3 N2 O, nM)\nOA3_O2 (mg/L)\nOA3_Del15N_Digestive (OA3 Del15 N Digestive, permil)\nOA3_Del15N_Meat (OA3 Del15 N Meat, permil)\nCA1_15N2 (CA1 15 N2, permil)\nCA1_N2O (CA1 N2 O, nM)\nCA1_O2 (mg/L)\nCA2_15N2 (CA2 15 N2, permil)\nCA2_N2O (CA2 N2 O, nM)\nCA2_O2 (mg/L)\nCA3_15N2 (CA3 15 N2, permil)\nCA3_N2O (CA3 N2 O, nM)\nCA3_O2 (mg/L)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_722560/index.htmlTable | https://www.bco-dmo.org/dataset/722560![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_722560.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_722560&showErrors=false&email= | BCO-DMO | bcodmo_dataset_722560 | |||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669652 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669652.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_669652/ | public | [Sediment chlorophyll and phaeophytin] - Raw benthic chlorophyll and phaeophytin data from cores collected in Massachusetts from 2012-2015. (Eutrophication Effects on Sediment Metabolism and Benthic Algal-bacterial Coupling: An Application of Novel Techniques in a LTER Estuary) | Raw benthic chlorophyll and phaeophytin data from cores collected in Massachusetts from 2012-2015.\n\ncdm_data_type = Other\nVARIABLES:\nmonth (unitless)\nestuary (unitless)\nplot (unitless)\ntimepoint (unitless)\nexperiment (unitless)\nsampleID (Sample ID, unitless)\nchla (Concentration Of Chlorophyll In Sea Water, ug cm-2)\nphaeo (ug cm-2)\nlogchla (log)\nlogphaeo (log)\nchla_phaeo (Concentration Of Chlorophyll In Sea Water, ug cm-2)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_669652/index.htmlTable | https://www.bco-dmo.org/dataset/669652![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_669652.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_669652&showErrors=false&email= | BCO-DMO | bcodmo_dataset_669652 | |||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669693 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_669693.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_669693/ | public | [Sediment PLFA concentrations] - Raw concentrations of individual PLFA compounds from Massachusetts from 2012-2015. (Eutrophication Effects on Sediment Metabolism and Benthic Algal-bacterial Coupling: An Application of Novel Techniques in a LTER Estuary) | Raw concentrations of individual PLFA compounds from Massachusetts from 2012-2015.\n\ncdm_data_type = Other\nVARIABLES:\nmonth (unitless)\nestuary (unitless)\ntimepoint (unitless)\nexperiment (unitless)\nc12 (percentage)\ni13 (percentage)\na13 (percentage)\nc13 (percentage)\ni14 (percentage)\nc14 (percentage)\ni15 (percentage)\na15 (percentage)\nc15 (percentage)\ni16 (percentage)\nc16 (percentage)\nme10_16 (percentage)\ni17 (percentage)\na17 (percentage)\nc17 (percentage)\nc18 (percentage)\ni19 (percentage)\na19 (percentage)\nc19 (percentage)\nc20_5w3 (percentage)\nc20_4w6 (percentage)\nc20 (percentage)\nc21 (percentage)\n... (9 more variables)\n | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_669693/index.htmlTable | https://www.bco-dmo.org/dataset/669693![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_669693.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_669693&showErrors=false&email= | BCO-DMO | bcodmo_dataset_669693 | |||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743054 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743054.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_743054/ | public | [SO248: Bulk FLA hydrolysis rates] - Microbial enzyme activities: polysaccharide hydrolase activities in bulk seawater samples from the RV\\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes polysaccharide hydrolysis rates measured in bulk (not filter-fractionated) seawater. Samples were collected on RV/Sonne cruise SO248 in May 2016. Links to archived CTD data are also provided.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_no (Depth, unitless)\ndepth (m)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep3_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_743054_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_743054/index.htmlTable | https://www.bco-dmo.org/dataset/743054![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_743054.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_743054&showErrors=false&email= | BCO-DMO | bcodmo_dataset_743054 | ||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743224 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743224.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_743224/ | public | [SO248: Bulk MCAMUF hydrolysis rates] - Microbial enzyme activities: glucosidase and peptidase activities of bulk seawater samples from the RV\\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes MCAMUF (glucosidase and peptidase) hydrolysis rates to measure microbial enzyme activities in bulk (not filter-fractionated) seawater. Samples were collected on RV/Sonne cruise SO248 in May 2016. Links to archived CTD data are also provided.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_no (Depth, unitless)\ndepth (m)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep3_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_743224_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_743224/index.htmlTable | https://www.bco-dmo.org/dataset/743224![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_743224.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_743224&showErrors=false&email= | BCO-DMO | bcodmo_dataset_743224 | ||||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743274.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743274 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743274.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_743274/ | public | [SO248: GF FLA hydrolysis rates] - Microbial enzyme activities: polysaccharide hydrolase activities of gravity filtered seawater samples from the RV\\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes polysaccharide hydrolysis rates measured on particles collected from gravity-filtered seawater. Gravity filtered samples were collected on RV/Sonne cruise SO248 in May 2016. Links to archived CTD data are also provided.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_no (Depth, unitless)\ndepth (m)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\nfilter_um (micrometers)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_743274_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_743274/index.htmlTable | https://www.bco-dmo.org/dataset/743274![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_743274.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_743274&showErrors=false&email= | BCO-DMO | bcodmo_dataset_743274 | |||
https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743320.subset | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743320 | https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743320.graph | https://erddap.bco-dmo.org/erddap/files/bcodmo_dataset_743320/ | public | [SO248: GF MCAMUF hydrolysis rates] - Microbial enzyme activities: glucosidase and peptidase activities of gravity filtered seawater samples from the RV\\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?) | This dataset includes MCAMUF (glucosidase and peptidase) hydrolysis rates to measure microbial enzyme activities on particles collected from gravity filtered seawater. Samples were collected on RV/Sonne cruise SO248 in May 2016. Links to archived CTD data are also provided.\n\ncdm_data_type = Other\nVARIABLES:\nstation_no (unitless)\ncast_no (unitless)\ntime (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)\nlatitude (degrees_north)\nlongitude (degrees_east)\ndepth_no (Depth, unitless)\ndepth (m)\nsubstrate (unitless)\ntimepoint (unitless)\ntime_elapsed_hr (hours)\nrep1_rate (nanomoles/liter/hour (nmol L-1 h-1))\nrep2_rate (nanomoles/liter/hour (nmol L-1 h-1))\naverage (nanomoles/liter/hour (nmol L-1 h-1))\nstd_dev (nanomoles/liter/hour (nmol L-1 h-1))\nfilter_um (micrometers)\n | https://erddap.bco-dmo.org/erddap/metadata/fgdc/xml/bcodmo_dataset_743320_fgdc.xml | https://erddap.bco-dmo.org/erddap/info/bcodmo_dataset_743320/index.htmlTable | https://www.bco-dmo.org/dataset/743320![]() | https://erddap.bco-dmo.org/erddap/rss/bcodmo_dataset_743320.rss | https://erddap.bco-dmo.org/erddap/subscriptions/add.html?datasetID=bcodmo_dataset_743320&showErrors=false&email= | BCO-DMO | bcodmo_dataset_743320 |