BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String The log includes a record of all scientific sampling events from the cruise.\nIn addition to event identification numbers unique for the cruise, the\nscientific sampling event log includes date and time (UTC), position (latitude\nand longitude), station and samples collected, activity (CTD\ncast),\\u00a0bottom depth, and a comment field to record additional\ninformation.\\u00a0
attribute NC_GLOBAL awards_0_award_nid String 558197
attribute NC_GLOBAL awards_0_award_number String OCE-1333929
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1333929 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL awards_1_award_nid String 558203
attribute NC_GLOBAL awards_1_award_number String OCE-1334387
attribute NC_GLOBAL awards_1_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1334387 (external link)
attribute NC_GLOBAL awards_1_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_1_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_1_funding_source_nid String 355
attribute NC_GLOBAL awards_1_program_manager String David L. Garrison
attribute NC_GLOBAL awards_1_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Event Log from OC1504A (MUSiCC) \n  K. Thamatrakoln and M. Brzezinski, PIs \n  Version 13 July 2016
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3  19 Dec 2019
attribute NC_GLOBAL date_created String 2016-07-13T14:34:30Z
attribute NC_GLOBAL date_modified String 2019-06-06T16:17:10Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.651685.1
attribute NC_GLOBAL Easternmost_Easting double -120.81017
attribute NC_GLOBAL geospatial_lat_max double 44.62575
attribute NC_GLOBAL geospatial_lat_min double 34.551
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -120.81017
attribute NC_GLOBAL geospatial_lon_min double -124.48169
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/651685 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String activity, bco, bco-dmo, biological, chemical, collected, comments, cruise, data, dataset, date, date_local, date_utc, depth, depth_w, dmo, erddap, event, latitude, local, longitude, management, oceanography, office, preliminary, samples, samples_collected, station, time, time_local, time_utc
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/651685/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/651685 (external link)
attribute NC_GLOBAL Northernmost_Northing double 44.62575
attribute NC_GLOBAL param_mapping String {'651685': {'lat': 'master - latitude', 'lon': 'master - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/651685/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Rutgers University
attribute NC_GLOBAL people_0_affiliation_acronym String Rutgers IMCS
attribute NC_GLOBAL people_0_person_name String Kimberlee Thamatrakoln
attribute NC_GLOBAL people_0_person_nid String 558200
attribute NC_GLOBAL people_0_role String Chief Scientist
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of California-Santa Barbara
attribute NC_GLOBAL people_1_affiliation_acronym String UCSB-LifeSci
attribute NC_GLOBAL people_1_person_name String Mark A. Brzezinski
attribute NC_GLOBAL people_1_person_nid String 50663
attribute NC_GLOBAL people_1_role String Co-Chief Scientist
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Rutgers University
attribute NC_GLOBAL people_2_affiliation_acronym String Rutgers IMCS
attribute NC_GLOBAL people_2_person_name String Kimberlee Thamatrakoln
attribute NC_GLOBAL people_2_person_nid String 558200
attribute NC_GLOBAL people_2_role String Contact
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Hannah Ake
attribute NC_GLOBAL people_3_person_nid String 650173
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL project String Diatom Silicification
attribute NC_GLOBAL projects_0_acronym String Diatom Silicification
attribute NC_GLOBAL projects_0_description String Description from NSF award abstract:\nDiatoms, unicellular, eukaryotic photoautotrophs, are among the most ecologically successful and functionally diverse organisms in the ocean. In addition to contributing one-fifth of total global primary productivity, diatoms are also the largest group of silicifying organisms in the ocean. Thus, diatoms form a critical link between the carbon and silicon (Si) cycles. The goal of this project is to understand the molecular regulation of silicification processes in natural diatom populations to better understand the processes controlling diatom productivity in the sea. Through culture studies and two research cruises, this research will couple classical measurements of silicon uptake and silica production with molecular and biochemical analyses of Silicification-Related Gene (SiRG) and protein expression. The proposed cruise track off the West Coast of the US will target gradients in Si and iron (Fe) concentrations with the following goals: 1) Characterize the expression pattern of SiRGs, 2) Correlate SiRG expression patterns to Si concentrations, silicon uptake kinetics, and silica production rates, 3) Develop a method to normalize uptake kinetics and silica production to SiRG expression levels as a more accurate measure of diatom activity and growth, 4) Characterize the diel periodicity of silica production and SiRG expression.\nIt is estimated that diatoms process 240 Teramoles of biogenic silica each year and that each molecule of silicon is cycled through a diatom 39 times before being exported to the deep ocean. Decades of oceanographic and field research have provided detailed insight into the dynamics of silicon uptake and silica production in natural populations, but a molecular understanding of the factors that influence silicification processes is required for further understanding the regulation of silicon and carbon fluxes in the ocean. Characterizing the genetic potential for silicification will provide new information on the factors that regulate the distribution of diatoms and influence in situ rates of silicon uptake and silica production. This research is expected to provide significant information about the molecular regulation of silicification in natural populations and the physiological basis of Si limitation in the sea.
attribute NC_GLOBAL projects_0_end_date String 2016-08
attribute NC_GLOBAL projects_0_geolocation String Oregon/California Coastal Upwelling Zone, between 34-44N and 120-124W
attribute NC_GLOBAL projects_0_name String Linking physiological and molecular aspects of diatom silicification in field populations
attribute NC_GLOBAL projects_0_project_nid String 558198
attribute NC_GLOBAL projects_0_start_date String 2013-09
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 34.551
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL subsetVariables String cruise
attribute NC_GLOBAL summary String Event log from the R/V Oceanus OC1504A, a cruise along the Oregon/California Coastal Upwelling Zone, between 34-44N and 120-124W during 2015
attribute NC_GLOBAL title String [MUSiCC OC1504A - Event Log] - Event log from the R/V Oceanus OC1504A, a cruise along the Oregon/California Coastal Upwelling Zone, between 34-44N and 120-124W during 2015 (Linking physiological and molecular aspects of diatom silicification in field populations)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -124.48169
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable cruise String
attribute cruise bcodmo_name String Cruise Name
attribute cruise description String Cruise name associated with OC1504A.
attribute cruise long_name String Cruise
attribute cruise units String unitless
variable event String
attribute event bcodmo_name String event
attribute event description String ID number for the event.
attribute event long_name String Event
attribute event nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/EVTAGFL/ (external link)
attribute event units String unitless
variable activity String
attribute activity bcodmo_name String activity_and_comments
attribute activity description String Activity performed with the instrument.
attribute activity long_name String Activity
attribute activity units String unitless
variable date_local String
attribute date_local bcodmo_name String date_local
attribute date_local description String Local date that the event took place; format dd-bbb-yy.
attribute date_local long_name String Date Local
attribute date_local units String unitless
variable time_local String
attribute time_local bcodmo_name String time_local
attribute time_local description String Local time that the event took place; format HH:MM.
attribute time_local long_name String Time Local
attribute time_local units String unitless
variable time_utc String
attribute time_utc bcodmo_name String time_utc
attribute time_utc description String Time (UTC) that the event took place; format HH:MM.
attribute time_utc long_name String Time Utc
attribute time_utc units String unitless
variable date_utc String
attribute date_utc bcodmo_name String date
attribute date_utc description String Date (UTC) that the event took place; format dd-bbb-yy.
attribute date_utc long_name String Date Utc
attribute date_utc nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ (external link)
attribute date_utc units String unitless
variable station String
attribute station bcodmo_name String sta_id
attribute station description String Alpha-numeric code representing the sampling station.
attribute station long_name String Station
attribute station units String unitless
variable depth_w short
attribute depth_w _FillValue short 32767
attribute depth_w actual_range short 55, 1850
attribute depth_w bcodmo_name String depth_w
attribute depth_w colorBarMaximum double 8000.0
attribute depth_w colorBarMinimum double -8000.0
attribute depth_w colorBarPalette String TopographyDepth
attribute depth_w description String Bottom depth
attribute depth_w long_name String Depth
attribute depth_w standard_name String depth
attribute depth_w units String meters
variable latitude double
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 34.551, 44.62575
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String Latitude in decimal degrees.
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude double
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -124.48169, -120.81017
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String Longitude in decimal degrees.
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable samples_collected String
attribute samples_collected bcodmo_name String sample_type
attribute samples_collected description String Types of samples collected.
attribute samples_collected long_name String Samples Collected
attribute samples_collected units String unitless
variable comments String
attribute comments bcodmo_name String comment
attribute comments description String Free text comments about the sampling event and post-cruise corrections.
attribute comments long_name String Comments
attribute comments units String unitless

 
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