BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson,.odvTxt
attribute NC_GLOBAL acquisition_description String A custom-built Fast Repetition Rate Fluorometer and Lifetime Fluorometer\nmeasured surface water continuously using the ship's underway water system.\nBackground fluorescence was measured daily using 0.2 um filtered seawater and\nmanually subtracted from sample data.\\u00a0
attribute NC_GLOBAL awards_0_award_nid String 558197
attribute NC_GLOBAL awards_0_award_number String OCE-1333929
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1333929 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL awards_1_award_nid String 558203
attribute NC_GLOBAL awards_1_award_number String OCE-1334387
attribute NC_GLOBAL awards_1_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1334387 (external link)
attribute NC_GLOBAL awards_1_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_1_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_1_funding_source_nid String 355
attribute NC_GLOBAL awards_1_program_manager String David L. Garrison
attribute NC_GLOBAL awards_1_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String FvFm and Lifetime Fluorescence \n    K. Thamatrakoln and M. Brzezinski, PIs \n    FvFm and lifetime fluorescence from the MV1405 cruise. \n    NPQ = non-photochemical quenching
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3  19 Dec 2019
attribute NC_GLOBAL date_created String 2016-07-21T18:49:16Z
attribute NC_GLOBAL date_modified String 2020-01-29T17:56:06Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.652298.1
attribute NC_GLOBAL Easternmost_Easting double -117.62
attribute NC_GLOBAL geospatial_lat_max double 42.88
attribute NC_GLOBAL geospatial_lat_min double 32.81
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -117.62
attribute NC_GLOBAL geospatial_lon_min double -127.32
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/652298 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_acronym String FRRf
attribute NC_GLOBAL instruments_0_dataset_instrument_description String A custom-built Fast Repetition Rate Fluorometer continuously measured surface water using the ships underway water system.
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 652310
attribute NC_GLOBAL instruments_0_description String An FRRf is used for measuring the fluorescence of a sample of phytoplankton photosynthetic competency (Fv/Fm).
attribute NC_GLOBAL instruments_0_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L05/current/113/ (external link)
attribute NC_GLOBAL instruments_0_instrument_name String Fast Repetition Rate Fluorometer
attribute NC_GLOBAL instruments_0_instrument_nid String 426
attribute NC_GLOBAL instruments_0_supplied_name String Fast Repetition Rate Fluorometer
attribute NC_GLOBAL instruments_1_acronym String Lifetime Fluorometer
attribute NC_GLOBAL instruments_1_dataset_instrument_description String A custom-built Lifetime Fluorometer continuously measured surface water using the ships underway water system.
attribute NC_GLOBAL instruments_1_dataset_instrument_nid String 652861
attribute NC_GLOBAL instruments_1_description String A Lifetime Fluorometer is used to measure picosecond fluorescence decay kinetics in phytoplankton.
attribute NC_GLOBAL instruments_1_instrument_name String Lifetime Fluorometer
attribute NC_GLOBAL instruments_1_instrument_nid String 652860
attribute NC_GLOBAL instruments_1_supplied_name String Lifetime Fluorometer
attribute NC_GLOBAL keywords String absorbtion, amp1, amp2, amp3, bco, bco-dmo, biological, chemical, corr, corr_Fluor_max, corr_Fluor_min, corr_FvFm, cruise, cruise_id, data, dataset, date, date_gmt, dmo, erddap, fluor, functional, functional_absorbtion, iso, latitude, longitude, management, max, min, npq, oceanography, office, preliminary, tav, time, time1, time2, time3, time_gmt
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/652298/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/652298 (external link)
attribute NC_GLOBAL Northernmost_Northing double 42.88
attribute NC_GLOBAL param_mapping String {'652298': {'lat': 'master - latitude', 'lon': 'master - longitude', 'ISO_DateTime_UTC': 'flag - time'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/652298/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Rutgers University
attribute NC_GLOBAL people_0_affiliation_acronym String Rutgers IMCS
attribute NC_GLOBAL people_0_person_name String Kimberlee Thamatrakoln
attribute NC_GLOBAL people_0_person_nid String 558200
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of California-Santa Barbara
attribute NC_GLOBAL people_1_affiliation_acronym String UCSB-LifeSci
attribute NC_GLOBAL people_1_person_name String Mark A. Brzezinski
attribute NC_GLOBAL people_1_person_nid String 50663
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Rutgers University
attribute NC_GLOBAL people_2_person_name String Dr Maxim Gorbunov
attribute NC_GLOBAL people_2_person_nid String 652863
attribute NC_GLOBAL people_2_role String Scientist
attribute NC_GLOBAL people_2_role_type String originator
attribute NC_GLOBAL people_3_affiliation String Rutgers University
attribute NC_GLOBAL people_3_person_name String Dr Fedor Kuzminov
attribute NC_GLOBAL people_3_person_nid String 652862
attribute NC_GLOBAL people_3_role String Scientist
attribute NC_GLOBAL people_3_role_type String originator
attribute NC_GLOBAL people_4_affiliation String Rutgers University
attribute NC_GLOBAL people_4_affiliation_acronym String Rutgers IMCS
attribute NC_GLOBAL people_4_person_name String Kimberlee Thamatrakoln
attribute NC_GLOBAL people_4_person_nid String 558200
attribute NC_GLOBAL people_4_role String Contact
attribute NC_GLOBAL people_4_role_type String related
attribute NC_GLOBAL people_5_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_5_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_5_person_name String Hannah Ake
attribute NC_GLOBAL people_5_person_nid String 650173
attribute NC_GLOBAL people_5_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_5_role_type String related
attribute NC_GLOBAL project String Diatom Silicification
attribute NC_GLOBAL projects_0_acronym String Diatom Silicification
attribute NC_GLOBAL projects_0_description String Description from NSF award abstract:\nDiatoms, unicellular, eukaryotic photoautotrophs, are among the most ecologically successful and functionally diverse organisms in the ocean. In addition to contributing one-fifth of total global primary productivity, diatoms are also the largest group of silicifying organisms in the ocean. Thus, diatoms form a critical link between the carbon and silicon (Si) cycles. The goal of this project is to understand the molecular regulation of silicification processes in natural diatom populations to better understand the processes controlling diatom productivity in the sea. Through culture studies and two research cruises, this research will couple classical measurements of silicon uptake and silica production with molecular and biochemical analyses of Silicification-Related Gene (SiRG) and protein expression. The proposed cruise track off the West Coast of the US will target gradients in Si and iron (Fe) concentrations with the following goals: 1) Characterize the expression pattern of SiRGs, 2) Correlate SiRG expression patterns to Si concentrations, silicon uptake kinetics, and silica production rates, 3) Develop a method to normalize uptake kinetics and silica production to SiRG expression levels as a more accurate measure of diatom activity and growth, 4) Characterize the diel periodicity of silica production and SiRG expression.\nIt is estimated that diatoms process 240 Teramoles of biogenic silica each year and that each molecule of silicon is cycled through a diatom 39 times before being exported to the deep ocean. Decades of oceanographic and field research have provided detailed insight into the dynamics of silicon uptake and silica production in natural populations, but a molecular understanding of the factors that influence silicification processes is required for further understanding the regulation of silicon and carbon fluxes in the ocean. Characterizing the genetic potential for silicification will provide new information on the factors that regulate the distribution of diatoms and influence in situ rates of silicon uptake and silica production. This research is expected to provide significant information about the molecular regulation of silicification in natural populations and the physiological basis of Si limitation in the sea.
attribute NC_GLOBAL projects_0_end_date String 2016-08
attribute NC_GLOBAL projects_0_geolocation String Oregon/California Coastal Upwelling Zone, between 34-44N and 120-124W
attribute NC_GLOBAL projects_0_name String Linking physiological and molecular aspects of diatom silicification in field populations
attribute NC_GLOBAL projects_0_project_nid String 558198
attribute NC_GLOBAL projects_0_start_date String 2013-09
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 32.81
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL subsetVariables String cruise_id
attribute NC_GLOBAL summary String FvFm and fluorescence lifetime data collected from the R/V Melville MV1405 along the California Coastline during 2014.
attribute NC_GLOBAL time_coverage_end String 2014-07-25T21:40:00Z
attribute NC_GLOBAL time_coverage_start String 2014-07-03T22:16:00Z
attribute NC_GLOBAL title String [IrnBru MV1405 - FvFm and Lifetime Fluorescence] - FvFm and fluorescence lifetime data collected from the R/V Melville MV1405 along the California Coastline during 2014 (Linking physiological and molecular aspects of diatom silicification in field populations)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -127.32
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable cruise_id String
attribute cruise_id bcodmo_name String cruise_id
attribute cruise_id description String cruise identification
attribute cruise_id long_name String Cruise Id
attribute cruise_id units String unitless
variable date_gmt String
attribute date_gmt bcodmo_name String date_gmt
attribute date_gmt description String GMT date; mm/dd/yy
attribute date_gmt long_name String Date Gmt
attribute date_gmt units String unitless
variable latitude double
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 32.81, 42.88
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String latitude
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude double
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -127.32, -117.62
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String longitude
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable time_gmt String
attribute time_gmt bcodmo_name String time_gmt
attribute time_gmt description String GMT time; HH:MM
attribute time_gmt long_name String Time Gmt
attribute time_gmt units String unitless
variable corr_Fluor_min float
attribute corr_Fluor_min _FillValue float NaN
attribute corr_Fluor_min actual_range float 63.36, 12996.48
attribute corr_Fluor_min bcodmo_name String fluorescence
attribute corr_Fluor_min description String minimal fluorescence yield corrected for background fluorescence by subtracting respective value measured in 0.2 micrometers filtered seawater from sample data
attribute corr_Fluor_min long_name String Corr Fluor Min
attribute corr_Fluor_min nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CPHLPM01/ (external link)
attribute corr_Fluor_min units String relative units
variable corr_Fluor_max float
attribute corr_Fluor_max _FillValue float NaN
attribute corr_Fluor_max actual_range float 116.62, 29651.86
attribute corr_Fluor_max bcodmo_name String fluorescence
attribute corr_Fluor_max description String maximal fluorescence yield corrected for background fluorescence by subtracting respective value measured in 0.2 micrometers filtered seawater from sample data
attribute corr_Fluor_max long_name String Corr Fluor Max
attribute corr_Fluor_max nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CPHLPM01/ (external link)
attribute corr_Fluor_max units String relative units
variable corr_FvFm float
attribute corr_FvFm _FillValue float NaN
attribute corr_FvFm actual_range float 0.039, 0.64
attribute corr_FvFm bcodmo_name String Fv2Fm
attribute corr_FvFm description String maximum photosynthetic efficiency of photosystem II (quantum yield of photochemistry)
attribute corr_FvFm long_name String Corr Fv Fm
attribute corr_FvFm units String dimensionless
variable functional_absorbtion short
attribute functional_absorbtion _FillValue short 32767
attribute functional_absorbtion actual_range short 68, 5594
attribute functional_absorbtion bcodmo_name String unknown
attribute functional_absorbtion description String sigma; functional absorption cross-section of photosystem II (PSII)
attribute functional_absorbtion long_name String Functional Absorbtion
attribute functional_absorbtion units String unitless
variable NPQ float
attribute NPQ _FillValue float NaN
attribute NPQ actual_range float -0.198, 2.208
attribute NPQ bcodmo_name String unknown
attribute NPQ description String non-photochemical quenching
attribute NPQ long_name String NPQ
attribute NPQ units String dimensionless
variable amp1 float
attribute amp1 _FillValue float NaN
attribute amp1 actual_range float 0.02, 0.966
attribute amp1 bcodmo_name String unknown
attribute amp1 description String amplitude 1 of the different components of the deconvolution of the fluorescence lifetime kinetics
attribute amp1 long_name String Amp1
attribute amp1 units String dimensionless
variable amp2 float
attribute amp2 _FillValue float NaN
attribute amp2 actual_range float 0.02, 0.98
attribute amp2 bcodmo_name String unknown
attribute amp2 description String amplitude 2  of the different components of the deconvolution of the fluorescence lifetime kinetics
attribute amp2 long_name String Amp2
attribute amp2 units String dimensionless
variable amp3 float
attribute amp3 _FillValue float NaN
attribute amp3 actual_range float 0.0, 0.898
attribute amp3 bcodmo_name String unknown
attribute amp3 description String amplitude 3  of the different components of the deconvolution of the fluorescence lifetime kinetics
attribute amp3 long_name String Amp3
attribute amp3 units String dimensionless
variable time1 float
attribute time1 _FillValue float NaN
attribute time1 actual_range float 0.02, 1.411
attribute time1 bcodmo_name String time_elapsed
attribute time1 description String time 1 of the different components of the fluorescence lifetime kinetics
attribute time1 long_name String Time1
attribute time1 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ELTMZZZZ/ (external link)
attribute time1 units String picosecond
variable time2 float
attribute time2 _FillValue float NaN
attribute time2 actual_range float 0.022, 2.488
attribute time2 bcodmo_name String time_elapsed
attribute time2 description String time 2 of the different components of the fluorescence lifetime kinetics
attribute time2 long_name String Time2
attribute time2 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ELTMZZZZ/ (external link)
attribute time2 units String picosecond
variable time3 float
attribute time3 _FillValue float NaN
attribute time3 actual_range float 0.0, 2.495
attribute time3 bcodmo_name String time_elapsed
attribute time3 description String time 3 of the different components of the fluorescence lifetime kinetics
attribute time3 long_name String Time3
attribute time3 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ELTMZZZZ/ (external link)
attribute time3 units String picosecond
variable TAV float
attribute TAV _FillValue float NaN
attribute TAV actual_range float 0.5, 2.347
attribute TAV bcodmo_name String mean
attribute TAV description String average lifetime of fluorescence
attribute TAV long_name String TAV
attribute TAV units String picosecond
variable time double
attribute time _CoordinateAxisType String Time
attribute time actual_range double 1.40442576E9, 1.4063244E9
attribute time axis String T
attribute time bcodmo_name String ISO_DateTime_UTC
attribute time description String DateTime (UTC) ISO formatted
attribute time ioos_category String Time
attribute time long_name String ISO Date Time UTC
attribute time nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/ (external link)
attribute time source_name String ISO_DateTime_UTC
attribute time standard_name String time
attribute time time_origin String 01-JAN-1970 00:00:00
attribute time time_precision String 1970-01-01T00:00:00Z
attribute time units String seconds since 1970-01-01T00:00:00Z

 
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