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Row Type | Variable Name | Attribute Name | Data Type | Value |
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attribute | NC_GLOBAL | access_formats | String | .htmlTable,.csv,.json,.mat,.nc,.tsv |
attribute | NC_GLOBAL | acquisition_description | String | Dilution batch-culture bioassay experiments were established 11 May 2011 - 15\nMay 2011 on the SBDOM 11 cruise using water samples collected from the upper\n8m of the water column. Water was gravity-filtered from the sampling Niskin\nbottle through two mixed cellulose ester filters (1.2 \\u00b5m and 0.2\n\\u00b5m). Duplicate 500 mL polycarbonate bottles were filled with 375 mL 0.2\n\\u00b5m filtrate (filter sterilized media) and 125 mL 1.2 \\u00b5m filtrate\n(bacterial inoculum) collected from the same cast. Bottles were incubated in\nthe dark at 11degrees C for 10 weeks. Samples for bacterial abundance, DOM,\nand community composition by DNA were collected by decanting from the bottle\nat specified intervals.\n \nDOC was quantified by high-temperature combustion on a modified Shimadzu\nTOC-V. We used 1.5 \\u00b5M DOC as a detection limit for these experiments.\n \nBacterial abundance was measured using a BD LSRII flow cytometer with an\nautosampler attachment. Samples were preserved in sterile cryovials with 0.2%\nfinal concentration paraformaldehyde, then stored frozen until analysis.\nSamples were stained with SYBR Green I for enumeration.\n \nDNA was collected from duplicate bottles combined (to conserve volume); 125 mL\nfrom each bottle was vacuum-filtered onto a 0.2 \\u00b5m polyethersulfone\nfilter and frozen. Samples were lysed in sucrose lysis buffer with 1% w/v\nsodium dodecyl sulfate and 0.2 mg mL-1 proteinase-K, and genomic DNA was\nextracted using a Qiagen DNEasy silica centrifugation kit. DNA was used to\nconduct multiplex amplicon pyrosequencing using primers 8F and 338R, following\nthe protocol of Nelson et al. (2014; doi: 10.1111/1462-2920.12241). Sequence\nanalysis was conducted in mothur (Schloss et al. 2009; doi:\n10.1128/AEM.01541-09) using a non-redundant subset of the SILVA SSU Ref 16S\nalignment database (v111) curated as in Nelson et al. (2014). |
attribute | NC_GLOBAL | awards_0_award_nid | String | 54995 |
attribute | NC_GLOBAL | awards_0_award_number | String | OCE-0850857 |
attribute | NC_GLOBAL | awards_0_data_url | String | http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0850857 |
attribute | NC_GLOBAL | awards_0_funder_name | String | NSF Division of Ocean Sciences |
attribute | NC_GLOBAL | awards_0_funding_acronym | String | NSF OCE |
attribute | NC_GLOBAL | awards_0_funding_source_nid | String | 355 |
attribute | NC_GLOBAL | awards_0_program_manager | String | David L. Garrison |
attribute | NC_GLOBAL | awards_0_program_manager_nid | String | 50534 |
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | comment | String | cruise SBDOM11 mini-remineralizations \n C. Carlson, M. Brzezinski (UCSB) \n version: 2017-10-30 |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_type | String | institution |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | data_source | String | extract_data_as_tsv version 2.3 19 Dec 2019 |
attribute | NC_GLOBAL | date_created | String | 2017-10-30T20:49:42Z |
attribute | NC_GLOBAL | date_modified | String | 2019-08-28T17:37:08Z |
attribute | NC_GLOBAL | defaultDataQuery | String | &time<now |
attribute | NC_GLOBAL | doi | String | 10.1575/1912/bco-dmo.718117.1 |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/718117 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | instruments_0_acronym | String | Shimadzu TOC-V |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_description | String | Used to measure dissolved organic carbon concentrations |
attribute | NC_GLOBAL | instruments_0_dataset_instrument_nid | String | 718508 |
attribute | NC_GLOBAL | instruments_0_description | String | A Shimadzu TOC-V Analyzer measures DOC by high temperature combustion method. |
attribute | NC_GLOBAL | instruments_0_instrument_external_identifier | String | http://onto.nerc.ac.uk/CAST/124 |
attribute | NC_GLOBAL | instruments_0_instrument_name | String | Shimadzu TOC-V Analyzer |
attribute | NC_GLOBAL | instruments_0_instrument_nid | String | 603 |
attribute | NC_GLOBAL | instruments_0_supplied_name | String | modified Shimadzu TOC-V |
attribute | NC_GLOBAL | instruments_1_acronym | String | Automated Sequencer |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_description | String | used to conduct multiplex amplicon pyrosequencing |
attribute | NC_GLOBAL | instruments_1_dataset_instrument_nid | String | 718511 |
attribute | NC_GLOBAL | instruments_1_description | String | General term for a laboratory instrument used for deciphering the order of bases in a strand of DNA. Sanger sequencers detect fluorescence from different dyes that are used to identify the A, C, G, and T extension reactions. Contemporary or Pyrosequencer methods are based on detecting the activity of DNA polymerase (a DNA synthesizing enzyme) with another chemoluminescent enzyme. Essentially, the method allows sequencing of a single strand of DNA by synthesizing the complementary strand along it, one base pair at a time, and detecting which base was actually added at each step. |
attribute | NC_GLOBAL | instruments_1_instrument_name | String | Automated DNA Sequencer |
attribute | NC_GLOBAL | instruments_1_instrument_nid | String | 649 |
attribute | NC_GLOBAL | instruments_2_acronym | String | Flow Cytometer |
attribute | NC_GLOBAL | instruments_2_dataset_instrument_description | String | BD LSRII flow cytometer with an autosampler attachment used to obtain bacterial abundance. |
attribute | NC_GLOBAL | instruments_2_dataset_instrument_nid | String | 718509 |
attribute | NC_GLOBAL | instruments_2_description | String | Flow cytometers (FC or FCM) are automated instruments that quantitate properties of single cells, one cell at a time. They can measure cell size, cell granularity, the amounts of cell components such as total DNA, newly synthesized DNA, gene expression as the amount messenger RNA for a particular gene, amounts of specific surface receptors, amounts of intracellular proteins, or transient signalling events in living cells.\n(from: http://www.bio.umass.edu/micro/immunology/facs542/facswhat.htm) |
attribute | NC_GLOBAL | instruments_2_instrument_external_identifier | String | https://vocab.nerc.ac.uk/collection/L05/current/LAB37/ |
attribute | NC_GLOBAL | instruments_2_instrument_name | String | Flow Cytometer |
attribute | NC_GLOBAL | instruments_2_instrument_nid | String | 660 |
attribute | NC_GLOBAL | instruments_2_supplied_name | String | BD LSRII flow cytometer |
attribute | NC_GLOBAL | instruments_3_acronym | String | Thermal Cycler |
attribute | NC_GLOBAL | instruments_3_dataset_instrument_description | String | used to conduct multiplex amplicon pyrosequencing |
attribute | NC_GLOBAL | instruments_3_dataset_instrument_nid | String | 718510 |
attribute | NC_GLOBAL | instruments_3_description | String | General term for a laboratory apparatus commonly used for performing polymerase chain reaction (PCR). The device has a thermal block with holes where tubes with the PCR reaction mixtures can be inserted. The cycler then raises and lowers the temperature of the block in discrete, pre-programmed steps.\n\n(adapted from http://serc.carleton.edu/microbelife/research_methods/genomics/pcr.html) |
attribute | NC_GLOBAL | instruments_3_instrument_name | String | PCR Thermal Cycler |
attribute | NC_GLOBAL | instruments_3_instrument_nid | String | 471582 |
attribute | NC_GLOBAL | keywords | String | abun, bact, Bact_abun_A, Bact_abun_B, Bact_abun_sampling_time, barcode, bco, bco-dmo, bge, BGE_A, BGE_B, biological, bottle, chemical, commerce, data, dataset, date, department, dev, dmo, dna, DNA_sampling_time, doc, DOC_A_st_dev, DOC_B_st_dev, DOC_Bottle_A, DOC_Bottle_B, DOC_sampling_time, erddap, growth, initiation, Initiation_time, management, mu_growth_A, mu_growth_B, oceanography, office, preliminary, pyrosequencing, Pyrosequencing_barcode, sample, sampling, sta, sta_id, time, timepoint |
attribute | NC_GLOBAL | license | String | https://www.bco-dmo.org/dataset/718117/license |
attribute | NC_GLOBAL | metadata_source | String | https://www.bco-dmo.org/api/dataset/718117 |
attribute | NC_GLOBAL | param_mapping | String | {'718117': {}} |
attribute | NC_GLOBAL | parameter_source | String | https://www.bco-dmo.org/mapserver/dataset/718117/parameters |
attribute | NC_GLOBAL | people_0_affiliation | String | University of California-Santa Barbara |
attribute | NC_GLOBAL | people_0_affiliation_acronym | String | UCSB-MSI |
attribute | NC_GLOBAL | people_0_person_name | String | Craig Carlson |
attribute | NC_GLOBAL | people_0_person_nid | String | 50575 |
attribute | NC_GLOBAL | people_0_role | String | Principal Investigator |
attribute | NC_GLOBAL | people_0_role_type | String | originator |
attribute | NC_GLOBAL | people_1_affiliation | String | University of California-Santa Barbara |
attribute | NC_GLOBAL | people_1_affiliation_acronym | String | UCSB-MSI |
attribute | NC_GLOBAL | people_1_person_name | String | Mark A. Brzezinski |
attribute | NC_GLOBAL | people_1_person_nid | String | 50663 |
attribute | NC_GLOBAL | people_1_role | String | Co-Principal Investigator |
attribute | NC_GLOBAL | people_1_role_type | String | originator |
attribute | NC_GLOBAL | people_2_affiliation | String | University of California-Santa Barbara |
attribute | NC_GLOBAL | people_2_affiliation_acronym | String | UCSB-MSI |
attribute | NC_GLOBAL | people_2_person_name | String | Emma Wear |
attribute | NC_GLOBAL | people_2_person_nid | String | 51542 |
attribute | NC_GLOBAL | people_2_role | String | Student |
attribute | NC_GLOBAL | people_2_role_type | String | related |
attribute | NC_GLOBAL | people_3_affiliation | String | University of California-Santa Barbara |
attribute | NC_GLOBAL | people_3_affiliation_acronym | String | UCSB-MSI |
attribute | NC_GLOBAL | people_3_person_name | String | Maverick Carey |
attribute | NC_GLOBAL | people_3_person_nid | String | 720215 |
attribute | NC_GLOBAL | people_3_role | String | Technician |
attribute | NC_GLOBAL | people_3_role_type | String | related |
attribute | NC_GLOBAL | people_4_affiliation | String | University of California-Santa Barbara |
attribute | NC_GLOBAL | people_4_affiliation_acronym | String | UCSB-MSI |
attribute | NC_GLOBAL | people_4_person_name | String | Elisa Halewood |
attribute | NC_GLOBAL | people_4_person_nid | String | 51543 |
attribute | NC_GLOBAL | people_4_role | String | Technician |
attribute | NC_GLOBAL | people_4_role_type | String | related |
attribute | NC_GLOBAL | people_5_affiliation | String | University of California-Santa Barbara |
attribute | NC_GLOBAL | people_5_affiliation_acronym | String | UCSB-MSI |
attribute | NC_GLOBAL | people_5_person_name | String | Ms Anna James |
attribute | NC_GLOBAL | people_5_person_nid | String | 471722 |
attribute | NC_GLOBAL | people_5_role | String | Technician |
attribute | NC_GLOBAL | people_5_role_type | String | related |
attribute | NC_GLOBAL | people_6_affiliation | String | Woods Hole Oceanographic Institution |
attribute | NC_GLOBAL | people_6_affiliation_acronym | String | WHOI BCO-DMO |
attribute | NC_GLOBAL | people_6_person_name | String | Nancy Copley |
attribute | NC_GLOBAL | people_6_person_nid | String | 50396 |
attribute | NC_GLOBAL | people_6_role | String | BCO-DMO Data Manager |
attribute | NC_GLOBAL | people_6_role_type | String | related |
attribute | NC_GLOBAL | project | String | SBDOM |
attribute | NC_GLOBAL | projects_0_acronym | String | SBDOM |
attribute | NC_GLOBAL | projects_0_description | String | This project is also affiliated with the Plumes and Blooms project.\nData:\nThe following data files have been submitted to BCO-DMO but are not yet available online. Data are restricted until June 2016. Please contact the PI for access prior to public availability:\n-- SBDOM10 and SBDOM11 CTD and Niskin bottle data.\nThe following are available online (see 'Datasets' heading below):\n-- SBDOM10 and SBDOM11 cruise plans (available online on deployment pages: PS1009, PS1103)\n-- SBDOM10 and SBDOM11 event logs (available online; see 'Datasets' below)\n-- Laboratory-based Bloom in a Bottle (BIB) Experiment\n-- Laboratory-based Remineralization Experiments\n-- SBDOM10 and SBDOM11 data summaries (including CTD data, nutrients, and bacterial production)\n\nProject Description from NSF Award Proposal and Abstract:\nDiatom blooms are known to produce prodigious quantities of DOM upon entering nutrient stress with a chemical composition that varies with the type of nutrient limitation (Si or N). This variable composition likely influences the nutritional value of DOM to microbes driving species successions towards functional groups of heterotrophic prokaryotes that are best able to metabolize particular forms of DOM. To date each side of this coupled system of production/consumption has been examined independently. A few studies have examined how limitation by different limiting nutrients affects the chemical character of the DOM produced by phytoplankton, while others have focused on the fate of DOM without detailed understanding of the mechanisms influencing its initial chemical composition.\nWe propose to investigate the mechanisms determining the character and fate of DOM produced during temperate diatom blooms. Specifically we will investigate how physiological stress on diatoms induced by different limiting nutrients influences the production, chemical composition of DOM and the microbial community structure that respond to it to better understand the mechanisms driving the accumulation and persistence of DOM in marine systems. The research will involve both laboratory and field experiments. The novel aspects of this work are:\n1) We will investigate how limitation by either N or Si impacts the quantity and chemical composition of the DOM released by diatoms.\n2) Assess how the differences in the chemical composition of the DOM produced under N or Si limitation affect its lability by examining the productivity, growth efficiency and community structure of heterotrophic bacterioplankton responding to the release of substrates.\n3) Predicted DOM dynamics based on (1) and (2) will be tested in the field during diatom blooms in the Santa Barbara Channel, California.\nWhile experiments investigating aspects of either 1 or 2 have been conducted successfully in the past (Lancelot, 1983; Billen and Fontigny, 1987; Goldman et al., 1992; Carlson et al.,1999; Cherrier and Bauer, 2004; Conan et al., 2007) ours will be the first study to combine these approaches in an integrated assessment of the mechanisms governing both the production and fate of DOM produced by diatom blooms experiencing limitation by different nutrients.\nReferences:\nLancelot, C. (1983). Factors affecting phytoplankton extracellular release in the Southern Bight of the North Sea. Marine Ecology Progress Series 12: 115-121.\nBillen, G. and A. Fontigny (1987). Dynamics of a Phaeocystis -dominated spring bloom in Belgian coastal waters. II. Bacterioplankton dynamics. Mar. Ecol. Prog. Ser. 37: 249-257.\nGoldman, J.C., D.A. Hansell and M.R. Dennett (1992). Chemical characterization of three large oceanic diatoms: potential impact on water column chemistry. Marine Ecology Progress Series 88: 257-270.\nCarlson, C.A., N.R. Bates, H.W. Ducklow and D.A. Hansell (1999). Estimation of bacterial respiration and growth efficiency in the Ross Sea, Antarctica. Aquatic Microbial Ecology 19: 229-244.\nCherrier, J. and J.E. Bauer (2004). Bacterial utilization of transient plankton-derived dissolved organic carbon and nitrogen inputs in surface ocean waters. Aquatic Microbial Ecology 35(3): 229-241.\nConan, P., M. Sondegaard, T. Kragh, F. Thingstad, M. Pujo-Pay, P.J.l.B. Williams, S. Markager, G. Cauwet, N.H. Borch, D. Evans and B. Rieman (2007). Partitioning of organic production in marine plankton communities: The effects of inorganic nutrient ratios and community composition on new dissolved organic matter. Limnology and Oceanography 52(2): 753-765. |
attribute | NC_GLOBAL | projects_0_end_date | String | 2014-03 |
attribute | NC_GLOBAL | projects_0_geolocation | String | Pacific California, Santa Barbara Channel |
attribute | NC_GLOBAL | projects_0_name | String | Mechanisms controlling the production and fate of DOM during diatom blooms |
attribute | NC_GLOBAL | projects_0_project_nid | String | 2226 |
attribute | NC_GLOBAL | projects_0_start_date | String | 2009-04 |
attribute | NC_GLOBAL | publisher_name | String | Biological and Chemical Oceanographic Data Management Office (BCO-DMO) |
attribute | NC_GLOBAL | publisher_type | String | institution |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | standard_name_vocabulary | String | CF Standard Name Table v55 |
attribute | NC_GLOBAL | summary | String | This dataset includes results from dilution batch-culture bioassay experiments reporting bacterial abundance, growth rates, barcode sequences and DOC were from the SBDOM 11 cruise in May 2011. |
attribute | NC_GLOBAL | title | String | [SBDOM11 mini-remineralization expt.] - Dilution batch-culture bioassay (remineralization) experiments from SBDOM11 project cruise from R/V Point Sur PS1103 in the Santa Barbara Channel, May 2011 (SBDOM project, SBC LTER project) (Mechanisms controlling the production and fate of DOM during diatom blooms) |
attribute | NC_GLOBAL | version | String | 1 |
attribute | NC_GLOBAL | xml_source | String | osprey2erddap.update_xml() v1.3 |
variable | Sample | String | ||
attribute | Sample | bcodmo_name | String | sample |
attribute | Sample | description | String | Internal experiment ID; A/B = replicate bottles |
attribute | Sample | long_name | String | Sample |
attribute | Sample | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ |
attribute | Sample | units | String | unitless |
variable | sta_id | float | ||
attribute | sta_id | _FillValue | float | NaN |
attribute | sta_id | actual_range | float | 7.0, 24.0 |
attribute | sta_id | bcodmo_name | String | station |
attribute | sta_id | description | String | station where water for experiment was collected |
attribute | sta_id | long_name | String | Sta Id |
attribute | sta_id | units | String | unitless |
variable | bottle | byte | ||
attribute | bottle | _FillValue | byte | 127 |
attribute | bottle | actual_range | byte | 2, 11 |
attribute | bottle | bcodmo_name | String | bottle |
attribute | bottle | description | String | rosette bottle from which water for experiment was drawn |
attribute | bottle | long_name | String | Bottle |
attribute | bottle | units | String | unitless |
variable | Initiation_date | String | ||
attribute | Initiation_date | bcodmo_name | String | date_start |
attribute | Initiation_date | description | String | local date when experiment was begun |
attribute | Initiation_date | long_name | String | Initiation Date |
attribute | Initiation_date | source_name | String | Initiation_date |
attribute | Initiation_date | time_precision | String | 1970-01-01 |
attribute | Initiation_date | units | String | unitless |
variable | Initiation_time | String | ||
attribute | Initiation_time | bcodmo_name | String | time_start |
attribute | Initiation_time | description | String | local time when experiment was begun |
attribute | Initiation_time | long_name | String | Initiation Time |
attribute | Initiation_time | units | String | unitless |
variable | Timepoint | byte | ||
attribute | Timepoint | _FillValue | byte | 127 |
attribute | Timepoint | actual_range | byte | 0, 8 |
attribute | Timepoint | bcodmo_name | String | time_point |
attribute | Timepoint | description | String | sampling timepoint; from 0 (post-initiation) through 8 |
attribute | Timepoint | long_name | String | Timepoint |
attribute | Timepoint | units | String | unitless |
variable | Date | String | ||
attribute | Date | bcodmo_name | String | date_local |
attribute | Date | description | String | local date on which timepoint was sampled |
attribute | Date | long_name | String | Date |
attribute | Date | time_precision | String | 1970-01-01 |
attribute | Date | units | String | unitless |
variable | DOC_sampling_time | String | ||
attribute | DOC_sampling_time | bcodmo_name | String | time_local |
attribute | DOC_sampling_time | description | String | local time at which DOC was sampled |
attribute | DOC_sampling_time | long_name | String | DOC Sampling Time |
attribute | DOC_sampling_time | units | String | unitless |
variable | DOC_Bottle_A | float | ||
attribute | DOC_Bottle_A | _FillValue | float | NaN |
attribute | DOC_Bottle_A | actual_range | float | 50.5, 73.1 |
attribute | DOC_Bottle_A | bcodmo_name | String | DOC |
attribute | DOC_Bottle_A | description | String | DOC concentration in Bottle A at specified timepoint (nd missing data = failed QC) |
attribute | DOC_Bottle_A | long_name | String | DOC Bottle A |
attribute | DOC_Bottle_A | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ |
attribute | DOC_Bottle_A | units | String | micromol/liter |
variable | DOC_A_st_dev | float | ||
attribute | DOC_A_st_dev | _FillValue | float | NaN |
attribute | DOC_A_st_dev | actual_range | float | 0.1, 2.4 |
attribute | DOC_A_st_dev | bcodmo_name | String | DOC |
attribute | DOC_A_st_dev | description | String | standard deviation between injections on Shimadzu instrument while measuring DOC in Bottle A at specified timepoint |
attribute | DOC_A_st_dev | long_name | String | DOC A St Dev |
attribute | DOC_A_st_dev | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ |
attribute | DOC_A_st_dev | units | String | micromol/liter |
variable | DOC_Bottle_B | float | ||
attribute | DOC_Bottle_B | _FillValue | float | NaN |
attribute | DOC_Bottle_B | actual_range | float | 50.5, 71.6 |
attribute | DOC_Bottle_B | bcodmo_name | String | DOC |
attribute | DOC_Bottle_B | description | String | DOC concentration in Bottle B at specified timepoint (nd missing data = failed QC) |
attribute | DOC_Bottle_B | long_name | String | DOC Bottle B |
attribute | DOC_Bottle_B | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ |
attribute | DOC_Bottle_B | units | String | micromol/liter |
variable | DOC_B_st_dev | float | ||
attribute | DOC_B_st_dev | _FillValue | float | NaN |
attribute | DOC_B_st_dev | actual_range | float | 0.1, 2.8 |
attribute | DOC_B_st_dev | bcodmo_name | String | DOC |
attribute | DOC_B_st_dev | description | String | standard deviation between injections on Shimadzu instrument while measuring DOC in Bottle B at specified timepoint |
attribute | DOC_B_st_dev | long_name | String | DOC B St Dev |
attribute | DOC_B_st_dev | nerc_identifier | String | https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ |
attribute | DOC_B_st_dev | units | String | micromol/liter |
variable | Bact_abun_sampling_time | String | ||
attribute | Bact_abun_sampling_time | bcodmo_name | String | cell_concentration |
attribute | Bact_abun_sampling_time | description | String | local time at which bacterial abundance was sampled |
attribute | Bact_abun_sampling_time | long_name | String | Bact Abun Sampling Time |
attribute | Bact_abun_sampling_time | units | String | unitless |
variable | Bact_abun_A | float | ||
attribute | Bact_abun_A | _FillValue | float | NaN |
attribute | Bact_abun_A | actual_range | float | 6.56E7, 2.18E9 |
attribute | Bact_abun_A | bcodmo_name | String | cell_concentration |
attribute | Bact_abun_A | description | String | Bacterial abundance in Bottle A at specified timepoint |
attribute | Bact_abun_A | long_name | String | Bact Abun A |
attribute | Bact_abun_A | units | String | cells/liter |
variable | Bact_abun_B | float | ||
attribute | Bact_abun_B | _FillValue | float | NaN |
attribute | Bact_abun_B | actual_range | float | 6.52E7, 2.1E9 |
attribute | Bact_abun_B | bcodmo_name | String | cell_concentration |
attribute | Bact_abun_B | description | String | Bacterial abundance in Bottle B at specified timepoint |
attribute | Bact_abun_B | long_name | String | Bact Abun B |
attribute | Bact_abun_B | units | String | cells/liter |
variable | DNA_sampling_time | String | ||
attribute | DNA_sampling_time | bcodmo_name | String | time_local |
attribute | DNA_sampling_time | description | String | local time at which DNA was sampled |
attribute | DNA_sampling_time | long_name | String | DNA Sampling Time |
attribute | DNA_sampling_time | units | String | unitless |
variable | Pyrosequencing_barcode | String | ||
attribute | Pyrosequencing_barcode | bcodmo_name | String | sequence |
attribute | Pyrosequencing_barcode | description | String | multiplexing barcode corresponding to this sample; in the combined dataset available under SRA accession number SRR1222603 |
attribute | Pyrosequencing_barcode | long_name | String | Pyrosequencing Barcode |
attribute | Pyrosequencing_barcode | units | String | unitless |
variable | mu_growth_A | float | ||
attribute | mu_growth_A | _FillValue | float | NaN |
attribute | mu_growth_A | actual_range | float | 0.18, 1.17 |
attribute | mu_growth_A | bcodmo_name | String | growth |
attribute | mu_growth_A | description | String | specific growth rate of bacterial cells in Bottle A; calculated over the exponential growth phase of the experiment |
attribute | mu_growth_A | long_name | String | Mu Growth A |
attribute | mu_growth_A | units | String | cells/day |
variable | mu_growth_B | float | ||
attribute | mu_growth_B | _FillValue | float | NaN |
attribute | mu_growth_B | actual_range | float | 0.23, 1.02 |
attribute | mu_growth_B | bcodmo_name | String | growth |
attribute | mu_growth_B | description | String | specific growth rate of bacterial cells in Bottle B; calculated over the exponential growth phase of the experiment |
attribute | mu_growth_B | long_name | String | Mu Growth B |
attribute | mu_growth_B | units | String | cells/day |
variable | BGE_A | byte | ||
attribute | BGE_A | _FillValue | byte | 127 |
attribute | BGE_A | actual_range | byte | 16, 70 |
attribute | BGE_A | bcodmo_name | String | growth |
attribute | BGE_A | description | String | bacterial growth efficiency (percent) in Bottle A; calculated over the exponential growth phase |
attribute | BGE_A | long_name | String | BGE A |
attribute | BGE_A | units | String | unitless |
variable | BGE_B | byte | ||
attribute | BGE_B | _FillValue | byte | 127 |
attribute | BGE_B | actual_range | byte | 16, 75 |
attribute | BGE_B | bcodmo_name | String | growth |
attribute | BGE_B | description | String | bacterial growth efficiency (percent) in Bottle B; calculated over the exponential growth phase |
attribute | BGE_B | long_name | String | BGE B |
attribute | BGE_B | units | String | unitless |