BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv
attribute NC_GLOBAL acquisition_description String Methodology in paper: (Pochon et al., 2014)
attribute NC_GLOBAL awards_0_award_nid String 55191
attribute NC_GLOBAL awards_0_award_number String DEB-0841441
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward?AWD_ID=0841441&HistoricalAwards=false (external link)
attribute NC_GLOBAL awards_0_funder_name String National Science Foundation
attribute NC_GLOBAL awards_0_funding_acronym String NSF
attribute NC_GLOBAL awards_0_funding_source_nid String 350
attribute NC_GLOBAL awards_0_program_manager String Saran Twombly
attribute NC_GLOBAL awards_0_program_manager_nid String 51702
attribute NC_GLOBAL awards_1_award_nid String 562593
attribute NC_GLOBAL awards_1_award_number String DEB-1350146
attribute NC_GLOBAL awards_1_data_url String http://www.nsf.gov/awardsearch/showAward?AWD_ID=1350146 (external link)
attribute NC_GLOBAL awards_1_funder_name String NSF Division of Environmental Biology
attribute NC_GLOBAL awards_1_funding_acronym String NSF DEB
attribute NC_GLOBAL awards_1_funding_source_nid String 550432
attribute NC_GLOBAL awards_1_program_manager String Betsy Von Holle
attribute NC_GLOBAL awards_1_program_manager_nid String 701685
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Sites and Symbionts \n  P. Edmunds, PI \n  Version 14 September 2018
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3  19 Dec 2019
attribute NC_GLOBAL date_created String 2018-05-04T19:08:24Z
attribute NC_GLOBAL date_modified String 2019-03-25T17:53:44Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.735079.1
attribute NC_GLOBAL geospatial_vertical_max double 14.0
attribute NC_GLOBAL geospatial_vertical_min double 5.0
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/735079 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String bay, bco, bco-dmo, biological, c12, c91, chemical, collection, Collection_Depth, d1a, data, dataset, depth, dmo, erddap, F4_8, F5_1, G3_3, G3_4, host, management, name, Name_of_Bay, Name_of_Site, oceanography, office, preliminary, sample, Sample_ID, site
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/735079/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/735079 (external link)
attribute NC_GLOBAL param_mapping String {'735079': {'Collection_Depth': 'master - depth'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/735079/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String California State University Northridge
attribute NC_GLOBAL people_0_affiliation_acronym String CSU-Northridge
attribute NC_GLOBAL people_0_person_name String Peter J. Edmunds
attribute NC_GLOBAL people_0_person_nid String 51536
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String The Cawthron Institute
attribute NC_GLOBAL people_1_person_name String Xavier Pochon
attribute NC_GLOBAL people_1_person_nid String 746205
attribute NC_GLOBAL people_1_role String Contact
attribute NC_GLOBAL people_1_role_type String related
attribute NC_GLOBAL people_2_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_2_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_2_person_name String Hannah Ake
attribute NC_GLOBAL people_2_person_nid String 650173
attribute NC_GLOBAL people_2_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL project String St. John LTREB,RUI-LTREB
attribute NC_GLOBAL projects_0_acronym String St. John LTREB
attribute NC_GLOBAL projects_0_description String Long Term Research in Environmental Biology (LTREB) in US Virgin Islands:\nFrom the NSF award abstract:\nIn an era of growing human pressures on natural resources, there is a critical need to understand how major ecosystems will respond, the extent to which resource management can lessen the implications of these responses, and the likely state of these ecosystems in the future. Time-series analyses of community structure provide a vital tool in meeting these needs and promise a profound understanding of community change. This study focuses on coral reef ecosystems; an existing time-series analysis of the coral community structure on the reefs of St. John, US Virgin Islands, will be expanded to 27 years of continuous data in annual increments. Expansion of the core time-series data will be used to address five questions: (1) To what extent is the ecology at a small spatial scale (1-2 km) representative of regional scale events (10's of km)? (2) What are the effects of declining coral cover in modifying the genetic population structure of the coral host and its algal symbionts? (3) What are the roles of pre- versus post-settlement events in determining the population dynamics of small corals? (4) What role do physical forcing agents (other than temperature) play in driving the population dynamics of juvenile corals? and (5) How are populations of other, non-coral invertebrates responding to decadal-scale declines in coral cover? Ecological methods identical to those used over the last two decades will be supplemented by molecular genetic tools to understand the extent to which declining coral cover is affecting the genetic diversity of the corals remaining. An information management program will be implemented to create broad access by the scientific community to the entire data set.\nThe importance of this study lies in the extreme longevity of the data describing coral reefs in a unique ecological context, and the immense potential that these data possess for understanding both the patterns of comprehensive community change (i.e., involving corals, other invertebrates, and genetic diversity), and the processes driving them. Importantly, as this project is closely integrated with resource management within the VI National Park, as well as larger efforts to study coral reefs in the US through the NSF Moorea Coral Reef LTER, it has a strong potential to have scientific and management implications that extend further than the location of the study.\nThe following publications and data resulted from this project:\n2015    Edmunds PJ, Tsounis G, Lasker HR (2015) Differential distribution of octocorals and scleractinians around St. John and St. Thomas, US Virgin Islands. Hydrobiologia. doi: 10.1007/s10750-015-2555-zoctocoral - sp. abundance and distributionDownload complete data for this publication (Excel file)\n2015    Lenz EA, Bramanti L, Lasker HR, Edmunds PJ. Long-term variation of octocoral populations in St. John, US Virgin Islands. Coral Reefs DOI 10.1007/s00338-015-1315-xoctocoral survey - densitiesoctocoral counts - photoquadrats vs. insitu surveyoctocoral literature reviewDownload complete data for this publication (Excel file)\n2015   Privitera-Johnson, K., et al., Density-associated recruitment in octocoral communities in St. John, US Virgin Islands, J.Exp. Mar. Biol. Ecol. DOI 10.1016/j.jembe.2015.08.006octocoral recruitmentDownload complete data for this publication (Excel file)\n2014    Edmunds PJ. Landscape-scale variation in coral reef community structure in the United States Virgin Islands. Marine Ecology Progress Series 509: 137–152. DOI 10.3354/meps10891.\nData at MCR-VINP.\nDownload complete data for this publication (Excel file)\n2014    Edmunds PJ, Nozawa Y, Villanueva RD.  Refuges modulate coral recruitment in the Caribbean and Pacific.  Journal of Experimental Marine Biology and Ecology 454: 78-84. DOI: 10.1016/j.jembe.2014.02.00\nData at MCR-VINP.Download complete data for this publication (Excel file)\n2014    Edmunds PJ, Gray SC.  The effects of storms, heavy rain, and sedimentation on the shallow coral reefs of St. John, US Virgin Islands.  Hydrobiologia 734(1):143-148.\nData at MCR-VINP.Download complete data for this publication (Excel file)\n2014    Levitan, D, Edmunds PJ, Levitan K. What makes a species common? No evidence of density-dependent recruitment or mortality of the sea urchin Diadema antillarum after the 1983-1984 mass mortality.  Oecologia. DOI 10.1007/s00442-013-2871-9.\nData at MCR-VINP.Download complete data for this publication (Excel file)\n2014    Lenz EA, Brown D, Didden C, Arnold A, Edmunds PJ.  The distribution of hermit crabs and their gastropod shells on shallow reefs in St. John, US Virgin Islands.  Bulletin of Marine Science 90(2):681-692. https://dx.doi.org/10.5343/bms.2013.1049\nData at MCR-VINP.Download complete data for this publication (Excel file)\n2013    Edmunds PJ.  Decadal-scale changes in the community structure of coral reefs in St. John, US Virgin Islands.  Marine Ecology Progress Series 489: 107-123.\nData at MCR-VINP.Download complete data for this publication (zipped Excel files)\n2013    Brown D, Edmunds PJ.  Long-term changes in the population dynamics of the Caribbean hydrocoral Millepora spp.  J. Exp Mar Biol Ecol 441: 62-70. doi: 10.1016/j.jembe.2013.01.013Millepora colony sizeMillepora cover - temps - storms 1992-2008Millepora cover 1992-2008seawater temperature USVI 1992-2008storms USVI 1992-2008Download complete data for this publication (Excel file)\n2012    Brown D, Edmunds PJ. The hermit crab Calcinus tibicen lives commensally on Millepora spp. in St. John, United States Virgin Islands.  Coral Reefs 32: 127-135. doi: 10.1007/s00338-012-0948-2crab abundance and coral sizecrab displacement behaviorcrab nocturnal surveyscrab predator avoidanceDownload complete data for this publication (Excel file)\n2011    Green DH, Edmunds PJ.  Spatio-temporal variability of coral recruitment on shallow reefs in St. John, US Virgin Islands.  Journal of Experimenal Marine Biology and Ecology 397: 220-229.\nData at MCR-VINP.Download complete data for this publication (Excel file)\n2011    Colvard NB, Edmunds PJ. (2011) Decadal-scale changes in invertebrate abundances on a Caribbean coral reef.  Journal of Experimental Marine Biology and Ecology. 397(2): 153-160. doi: 10.1016/j.jembe.2010.11.015benthic invert codesinverts - Tektite and Yawzi Ptinverts - pooledDownload complete data for this publication (Excel file)
attribute NC_GLOBAL projects_0_end_date String 2014-04
attribute NC_GLOBAL projects_0_geolocation String St. John, U.S. Virgin Islands; California State University Northridge
attribute NC_GLOBAL projects_0_name String LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019
attribute NC_GLOBAL projects_0_project_nid String 2272
attribute NC_GLOBAL projects_0_project_website String http://coralreefs.csun.edu/ (external link)
attribute NC_GLOBAL projects_0_start_date String 2009-05
attribute NC_GLOBAL projects_1_acronym String RUI-LTREB
attribute NC_GLOBAL projects_1_description String Describing how ecosystems like coral reefs are changing is at the forefront of efforts to evaluate the biological consequences of global climate change and ocean acidification. Coral reefs have become the poster child of these efforts. Amid concern that they could become ecologically extinct within a century, describing what has been lost, what is left, and what is at risk, is of paramount importance. This project exploits an unrivalled legacy of information beginning in 1987 to evaluate the form in which reefs will persist, and the extent to which they will be able to resist further onslaughts of environmental challenges. This long-term project continues a 27-year study of Caribbean coral reefs. The diverse data collected will allow the investigators to determine the roles of local and global disturbances in reef degradation. The data will also reveal the structure and function of reefs in a future with more human disturbances, when corals may no longer dominate tropical reefs.\nThe broad societal impacts of this project include advancing understanding of an ecosystem that has long been held emblematic of the beauty, diversity, and delicacy of the biological world. Proposed research will expose new generations of undergraduate and graduate students to natural history and the quantitative assessment of the ways in which our planet is changing. This training will lead to a more profound understanding of contemporary ecology at the same time that it promotes excellence in STEM careers and supports technology infrastructure in the United States. Partnerships will be established between universities and high schools to bring university faculty and students in contact with k-12 educators and their students, allow teachers to carry out research in inspiring coral reef locations, and motivate children to pursue STEM careers. Open access to decades of legacy data will stimulate further research and teaching.
attribute NC_GLOBAL projects_1_end_date String 2019-04
attribute NC_GLOBAL projects_1_geolocation String USVI
attribute NC_GLOBAL projects_1_name String RUI-LTREB Renewal: Three decades of coral reef community dynamics in St. John, USVI: 2014-2019
attribute NC_GLOBAL projects_1_project_nid String 734983
attribute NC_GLOBAL projects_1_project_website String http://coralreefs.csun.edu/ (external link)
attribute NC_GLOBAL projects_1_start_date String 2014-05
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String Symbiodinium algae in foraminifer and corals in St. John, USVI.
attribute NC_GLOBAL title String [Sites and symbionts] - Symbiodinium algae in foraminifer and corals in St. John, USVI. (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable Name_of_Bay String
attribute Name_of_Bay bcodmo_name String site
attribute Name_of_Bay description String Bay sampled
attribute Name_of_Bay long_name String Name Of Bay
attribute Name_of_Bay units String unitless
variable Name_of_Site String
attribute Name_of_Site bcodmo_name String site
attribute Name_of_Site description String Study site
attribute Name_of_Site long_name String Name Of Site
attribute Name_of_Site units String unitless
variable depth double
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth _FillValue double NaN
attribute depth actual_range double 5.0, 14.0
attribute depth axis String Z
attribute depth bcodmo_name String depth
attribute depth description String Sampling depth
attribute depth ioos_category String Location
attribute depth long_name String Collection Depth
attribute depth nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ (external link)
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m
variable Host String
attribute Host bcodmo_name String species
attribute Host description String Host species sampled
attribute Host long_name String Host
attribute Host units String unitless
variable Sample_ID String
attribute Sample_ID bcodmo_name String sample
attribute Sample_ID description String Sample ID
attribute Sample_ID long_name String Sample ID
attribute Sample_ID nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ (external link)
attribute Sample_ID units String unitless
variable A3 byte
attribute A3 _FillValue byte 127
attribute A3 actual_range byte 5, 10
attribute A3 bcodmo_name String count
attribute A3 description String Number of Symbiodinium OTUs found in each sample
attribute A3 long_name String A3
attribute A3 units String count
variable B1 byte
attribute B1 _FillValue byte 127
attribute B1 actual_range byte 1, 12
attribute B1 bcodmo_name String count
attribute B1 description String Number of Symbiodinium OTUs found in each sample
attribute B1 long_name String B1
attribute B1 units String count
variable C7 byte
attribute C7 _FillValue byte 127
attribute C7 actual_range byte 1, 6
attribute C7 bcodmo_name String count
attribute C7 description String Number of Symbiodinium OTUs found in each sample
attribute C7 long_name String C7
attribute C7 units String count
variable C12 byte
attribute C12 _FillValue byte 127
attribute C12 actual_range byte 1, 9
attribute C12 bcodmo_name String count
attribute C12 description String Number of Symbiodinium OTUs found in each sample
attribute C12 long_name String C12
attribute C12 units String count
variable C91 byte
attribute C91 _FillValue byte 127
attribute C91 actual_range byte 3, 3
attribute C91 bcodmo_name String count
attribute C91 description String Number of Symbiodinium OTUs found in each sample
attribute C91 long_name String C91
attribute C91 units String count
variable D1a byte
attribute D1a _FillValue byte 127
attribute D1a actual_range byte 1, 12
attribute D1a bcodmo_name String count
attribute D1a description String Number of Symbiodinium OTUs found in each sample
attribute D1a long_name String D1a
attribute D1a units String count
variable D2 byte
attribute D2 _FillValue byte 127
attribute D2 actual_range byte 2, 5
attribute D2 bcodmo_name String count
attribute D2 description String Number of Symbiodinium OTUs found in each sample
attribute D2 long_name String D2
attribute D2 units String count
variable G3_3 byte
attribute G3_3 _FillValue byte 127
attribute G3_3 actual_range byte 1, 1
attribute G3_3 bcodmo_name String count
attribute G3_3 description String Number of Symbiodinium OTUs found in each sample
attribute G3_3 long_name String G3 3
attribute G3_3 units String count
variable G3_4 byte
attribute G3_4 _FillValue byte 127
attribute G3_4 actual_range byte 2, 2
attribute G3_4 bcodmo_name String count
attribute G3_4 description String Number of Symbiodinium OTUs found in each sample
attribute G3_4 long_name String G3 4
attribute G3_4 units String count
variable F4_8 byte
attribute F4_8 _FillValue byte 127
attribute F4_8 actual_range byte 10, 10
attribute F4_8 bcodmo_name String count
attribute F4_8 description String Number of Symbiodinium OTUs found in each sample
attribute F4_8 long_name String F4 8
attribute F4_8 units String count
variable F5_1 byte
attribute F5_1 _FillValue byte 127
attribute F5_1 actual_range byte 10, 11
attribute F5_1 bcodmo_name String count
attribute F5_1 description String Number of Symbiodinium OTUs found in each sample
attribute F5_1 long_name String F5 1
attribute F5_1 units String count
variable H1 byte
attribute H1 _FillValue byte 127
attribute H1 actual_range byte 10, 10
attribute H1 bcodmo_name String count
attribute H1 description String Number of Symbiodinium OTUs found in each sample
attribute H1 long_name String H1
attribute H1 units String count
variable H5 byte
attribute H5 _FillValue byte 127
attribute H5 actual_range byte 7, 10
attribute H5 bcodmo_name String count
attribute H5 description String Number of Symbiodinium OTUs found in each sample
attribute H5 long_name String H5
attribute H5 units String count

 
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