BCO-DMO ERDDAP
Accessing BCO-DMO data 		log in    
Brought to you by BCO-DMO    
 
 
Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv
attribute NC_GLOBAL acquisition_description String We collected 10 ovigerous females with stage-1 non-eyed eggs by hand and from\neach habitat (mangrove, salt marsh, dock) during the week preceding the full\nmoon of each of five consecutive months throughout the A. pisonii reproductive\nseason. Crabs were immediately placed on dry ice and stored at -80oC until\ndissection at which time the size and gut-width were determined and the whole\negg clutch was carefully removed from the pleopods. The egg clutch was then\nfreeze-fried and stored at -80oC until analysis.\n \nWe used a modified Folch Extraction to extract the lipids from a subset\n(~20-40mg) of each clutch.\n \nWe used a subset (~10mg) of each clutch to compare the glycogen content of\neggs between habitats. We did so using a Sigma-Aldrich Glycogen Assay Kit\nMAK016 and determined the glycogen concentration as a percentage of egg mass\nthrough colorimetry per the manufacturer instructions.\n \nMass of extracted lipids was calculated by subtracting the mass of the vial in\nwhich lipids was extracted from the combined mass of the lipids and the vial.\n \nGlycogen concentration was calculated using colorimetry per the manufacturer\ninstructions.\n \nLocations, Florida East Coast:  \n Round Island Park: 27o33'33\\\"N 80o19'53\\\"W  \n Pepper Park: 27o29'42'N 80o18'12\\\"W  \n North Causeway Park: 27o28'28\\\"N 80o19'12\\\"W  \n Oslo Road: 27o35'14\\\"N 80o21'55\\\"W  \n Anastasia State Park: 29o52'40\\\"N 81o16'32\\\"W  \n Guana-Tolomato-Matanzas NERR: 30o0'49\\\"N 81o20'42\\\"W  \n Vilano Inlet: 29o55'16\\\"N 81o17'57\\\"W  \n Palm Valley/Nocatee Canoe Launch: 30o07'57\\\"N 81o23'08\\\"W  \n St. Augustine Yacht Club: 29o53'09\\\"N 81o17'08\\\"W  \n Boating Club Road: 29o56'34\\\"N 81o18'31\\\"W
attribute NC_GLOBAL awards_0_award_nid String 562103
attribute NC_GLOBAL awards_0_award_number String OCE-1129166
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1129166 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Lipid and glycogen contents of A. pisonii eggs \n   B. Griffen, Z. Cannizzo \n   version: 2018-07-16
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3  19 Dec 2019
attribute NC_GLOBAL dataset_current_state String Final and no updates
attribute NC_GLOBAL date_created String 2018-07-24T12:33:46Z
attribute NC_GLOBAL date_modified String 2020-07-16T13:25:59Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.741192.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/741192 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_acronym String Scale
attribute NC_GLOBAL instruments_0_dataset_instrument_description String Used to measure wet and dry weights of eggs
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 741199
attribute NC_GLOBAL instruments_0_description String An instrument used to measure weight or mass.
attribute NC_GLOBAL instruments_0_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L05/current/LAB13/ (external link)
attribute NC_GLOBAL instruments_0_instrument_name String Scale
attribute NC_GLOBAL instruments_0_instrument_nid String 714
attribute NC_GLOBAL instruments_1_dataset_instrument_description String Used to determine the energy content of the eggs.
attribute NC_GLOBAL instruments_1_dataset_instrument_nid String 741200
attribute NC_GLOBAL instruments_1_description String A device for determining heats of combustion by igniting a sample in a high pressure of oxygen in a sealed vessel and measuring the resulting rise in temperature.
attribute NC_GLOBAL instruments_1_instrument_name String bomb calorimeter
attribute NC_GLOBAL instruments_1_instrument_nid String 741189
attribute NC_GLOBAL instruments_1_supplied_name String Parr semimicro bomb calorimeter
attribute NC_GLOBAL keywords String bco, bco-dmo, biological, chemical, coastwatch, conc, data, dataset, date, dmo, egg, Egg_W, erddap, F_Vial, glycogen, Glycogen_Conc, Glycogen_pct, Glycogen_W, GW_CW, habitat, iso, lipid, Lipid_pct, Lipid_wt, management, noaa, oceanography, office, pct, preliminary, site, time, vial, Vial_Lipid, w
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/741192/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/741192 (external link)
attribute NC_GLOBAL param_mapping String {'741192': {}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/741192/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String University of South Carolina
attribute NC_GLOBAL people_0_person_name String Dr Blaine D. Griffen
attribute NC_GLOBAL people_0_person_nid String 562106
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of South Carolina
attribute NC_GLOBAL people_1_person_name String Zachary J. Cannizzo
attribute NC_GLOBAL people_1_person_nid String 740019
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_person_name String Zachary J. Cannizzo
attribute NC_GLOBAL people_2_person_nid String 740019
attribute NC_GLOBAL people_2_role String Contact
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Nancy Copley
attribute NC_GLOBAL people_3_person_nid String 50396
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL project String Variation in Metabolic Processes
attribute NC_GLOBAL projects_0_acronym String Variation in Metabolic Processes
attribute NC_GLOBAL projects_0_description String Description from NSF award abstract:\nA major goal of biological and ecological sciences is to understand natural systems well enough to predict how species and populations will respond to a rapidly changing world (i.e., climate change, habitat loss, etc.). A population under any conditions will grow, shrink, or disappear altogether depending on how efficiently individuals consume resources (food), utilize that food metabolically, and eventually reproduce. However, making accurate predictions based on these metabolic processes is complicated by the realities that each species has different resource requirements and that no two individuals within a species are exactly alike. Rather, individuals vary and this variation, both within and across species, is central to many ecological and evolutionary processes. Developing the ability to predict responses of biological systems to a changing world therefore requires a mechanistic understanding of variation. The goal of this project is to improve this mechanistic understanding by examining variation within a metabolic context across a range of species that have a spectrum of commonly-seen resource requirements. Further, the work capitalizes on a unique biological characteristic of this group of species that allows control and manipulation of individual reproduction, facilitating experimental study of the mechanistic links between variation in individual consumption, metabolism, and reproduction. The foundation this research is a combination of field measurements and laboratory experiments using both well-established and newly-developed techniques to quantify these links. The result will be a quantitative framework to predict how individuals will respond reproductively to changes in resource use. Because of the close link between individual reproduction and population dynamics, this research will contribute substantially to predictions in population dynamics under realistic conditions where individuals use more than a single resource, and improve the prediction of responses to current and future ecological changes.\nThe following publications and data resulted from this project:\nBelgrad, B. and B. Griffen. 2016. Predator-prey interactions mediated by prey personality and predator identity.Proc. Roy. Soc. B: In Review. [2016-01-20]P. herbstii mortality data: Mortality of crabs when exposed to either a single blue crab, toadfish, or no predator for a weekP. herbstii personality data: Refuge use of crabs when exposed to predator odor cues from either blue crabs, toadfish, or control of no cueP. herbstii predator behavior data: Refuge use and mobility of blue crabs and toadfish while in mesocosms for a week - behavior measured during two days.\nBelgrad, B. and B. Griffen. 2016. The influence of dietary shifts on fitness of the blue crab, Callinectes sapidus. PloS One. DOI: 10.1371/journal.pone.0145481.Blue crab activity: Activity of crabs fed different diets over a summerBlue crab egg size: Volume of eggs for crabs fed different dietsBlue crab hepatopancreas index (HSI): Weight of hepatopancreas for crabs fed different dietsBlue crab hepatopancreas lipid content: Hepatopancreas lipid content of crabs fed different dietsBlue crab reproductive tissue analysis (GSI): Gonadosomatic index of blue crabs on various dietsBlue crab survival: Blue crab survival data during the dietary study\nKnotts ER, Griffen BD. 2016. Individual movement rates are sufficient to determine and maintain dynamic spatial positioning within Uca pugilator herds. Behavioral Ecology and Sociobiology 70:639-646Uca pugilator: behavior change with carapace marking: Search space behavior due to carapace treatment (control, nail polish, and food dye)Uca pugilator: field spatial position: Assessment of individual's position within a herd at 3 min. intervals; for proportion of time found at edge of herdUca pugilator: herd position proportion: Individual's proportion of time spent in an edge/alone position among a herdUca pugilator: search space distribution: Search space that crabs traveled; to evaluate the sample's distribution of exploratory behavior\nBelgrad, B. and B. Griffen. 2015. Rhizocephalan infection modifies host food consumption by reducing host activity levels. Journal of Experimental Marine Biology and Ecology. 466: 70-75.E. depressus digestion time : Time taken for food to pass through gut of flat-backed mud crabs infected by a parasiteE. depressus metabolism: Respiration rate of infected/uninfected flat-backed mud crabsE. depressus reaction time to prey: Time taken for infected/uninfected flat-backed mud crabs to react to the presence of prey\nBlakeslee, A.M., C.L. Keogh, A.E. Fowler, B. Griffen. 2015. Assessing the effects of trematode infection on invasive green crabs in eastern North America. PLOS One 10(6): e0128674.(pdf)Carcinus: hemocyte density: Counts of circulating hemocyte density in Carcinus maenasCarcinus: parasites physiology behavior: Behavior and physiology of Carcinus maenas infected with trematode parasite\nGriffen BD, Norelli AP (2015) Spatially variable habitat quality contributes to within-population variation in reproductive success. Ecology and Evolution 5:1474-1483.P. herbstii diet: sampling site characteristics (Eco-Evo 2015)P. herbstii diet: body measurements (Eco-Evo 2015)P. herbstii diet & reproduction (Eco-Evo 2015)\nP. herbstii: collection sites (Ecol-Evol 2015)\nGriffen BD, Riley ME (2015) Potential impacts of invasive crabs on one life history strategy of native rock crabs in the Gulf of Maine. Biological Invasions 17:2533-2544.Cancer consumption and reproduction (Bio.Inv. 2015): Lab experiment linking dietary consumption and reproduction\nGriffen BD, Vogel M, Goulding L, Hartman R (2015) Energetic effects of diet choice by invasive Asian shore crabs: implications for persistence when prey are scarce. Marine Ecology Progress Series 522:181-192.Hemigrapsus diet 1 (MEPS 2015)Hemigrapsus diet 2 (MEPS 2015)\nHogan and Griffen (2014). The Dietary And Reproductive Consequences Of Fishery-Related Claw Removal For The Stone Crab Menippe Spp. Journal of Shellfish Research, Vol. 33, No. 3, 795–804.Stone crab: 052012-DietChoiceExp1: Prey choice for 2-clawed and 1-clawed Stone Crabs (Menippe spp.)Stone crab: 052012-LongTermConsumption: Long-term consuption for 2-clawed and 1-clawed Stone Crabs (Menippe spp.), summer of 2012Stone crab: 062013-DietChoiceExp2: Prey choice for 2-clawed and 1-clawed Stone Crabs (Menippe spp.)Stone crab: 062013-PreySizeSelection: Prey Size selection ranking for 2-clawed and 1-clawed Stone Crabs (Menippe spp.)\nRiley M, Johnston CA, Feller IC, and Griffen B. 2014. Range expansion of Aratus pisonii (mangrove tree crab) into novel vegetative habitats. Southeastern Naturalist 13(4): 43-38A. pisonii: range expansion: Aratus pisonii survey in native mangrove and novel salt marsh habitats\nRiley M, Vogel M, Griffen B. 2014. Fitness-associated consequences of an omnivorous diet for the mangrove tree crab Aratus pisonii. Aquatic Biology 20:35-43, DOI: 10.3354/ab00543A. pisonii: fitness and diet: Impact of diet variation on physiological and reproductive condition of A. pisonii\nToscano BJ, Newsome B, Griffen BD (2014) Parasite modification of predator functional response. Oecologia 175:345-352bE. depressus - parasite and feeding (Oecologia, 2014): Feeding with and without parasitic barnacle infectionE. depressus - parasite and prey handling (Oecologia, 2014): Food handling with and without parasitic barnacle infectionE. depressus - parasite study - field survey (Oecologia, 2014): Parasitised field survey\nToscano BJ, Griffen BD (2014) Trait-mediated functional responses: predator behavioural type mediates prey consumption.Journal of Animal Ecology 83:1469-1477P. herbstii - activity and feeding (JAE, 2014): Activity level and feeding with and without predator cue\nToscano BJ, Gatto J, Griffen BD (2014) Effects of predation threat on repeatability of individual crab behavior revealed by mark recapture. Behavioral Ecology and Sociobiology 68:519-527P. herbstii - recapture behavior (BESB, 2014): Mud crabs refuge use and activity level - initial measurementsP. herbstii - refuge use (BESB, 2014): Effect of predation threat on repeatability of individual crab behavior revealed by mark-recapture\nGriffen BD, Altman I, Bess BM, Hurley J, Penfield A (2012) The role of foraging in the success of invasive species. Biological Invasions. 14:2545-2558Hemigrapsus seasonal diet (Bio.Inv. 2012): Percent herbivory and gut fullness for Hemigrapsus sanguineus at different times of year\nGriffen BD, Toscano B, Gatto J (2012) The role of intraspecific trait variation in mediating indirect interactions. Ecology 93:1935-1943P. herbstii refuge use (Ecology, 2012): Proportion of time that Panopeus herbstii spent using refuge habitats in a lab experimentP. herbstii: Field personality distribution (Ecology, 2012): Field distribution of personality types in the mud crab Panopeus herbstii relative to tidal heightP. herbstii: Trait mediated indirect effect (Ecology, 2012): Influence of refuge use by the mud crab Panopeus herbstii on consumption of bivalves\nRiley ME, Griffen BD (2017) Habitat-specific differences alter traditional biogeographic patterns of life history in a climate-change induced range expansion.  PLOS One 12(5):e0176263A. pisonii: egg size: Comparing egg size in Aratus pisonii populations from mangrove and salt marsh habitatsA. pisonii: fecundity: Determining fecundity of Aratus pisonii populations in mangrove and salt marsh habitatsA. pisonii: larval starvation resistance: Comparing larval quality in Aratus pisonii populations from mangrove and salt marsh habitatsA. pisonii: latitudinal body size: Survey examining latitudinal body size patterns in Aratus pisoniiA. pisonii: predation: Comparing predation pressure on Aratus pisonii in mangrove and salt marsh habitatsA. pisonii: reproductive effort: Survey comparing Aratus pisonii reproductive effort in native and novel habitatsA. pisonii: herbivory: Relationship between leaf herbivory, tree characteristics, and refuge availabilityA. pisonii: mangrove tree survey: Mangrove tree distribution and characteristics in a dwarf mangrove system\nCannizzo ZJ, Dixon SR & Griffen BD (2018). An anthropogenic habitat within a suboptimal colonized ecosystem provides improved conditions for a range-shifting species. Ecology and Evolution, 8(3):1524-1533.A. pisonii: behavior: Proportion of time the mangrove tree crab Aratus pisonii spent in different behaviors related to diet and energy storageA. pisonii: dock-marsh thermal: Thermal readings from under a dock and in a nearby salt marshA. pisonii: sun-shade: Proportion of time that mangrove tree crab Aratus pisonii spent in sun and shade in three habitats, 2015-2016.A. pisonii: thermal picture: Thermal condition of A. pisonii in three habitats: under dock, mangroves, saltmarsh
attribute NC_GLOBAL projects_0_end_date String 2016-08
attribute NC_GLOBAL projects_0_name String Linking Variation in Metabolic Processes as a Key to Prediction
attribute NC_GLOBAL projects_0_project_nid String 562104
attribute NC_GLOBAL projects_0_start_date String 2011-09
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String This dataset includes calculations of the lipid and glycogen content of eggs of mangrove tree crabs, A. pisonii, from three habitats: mangrove, saltmarsh and mangrove collected along the eastern Florida coast in 2016.
attribute NC_GLOBAL title String [A. pisonii: egg lipid and glycogen] - Lipid and glycogen content of A. pisonii eggs from three habitats along the Florida eastern coast, 2016 (Linking Variation in Metabolic Processes as a Key to Prediction)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.5
variable Habitat String
attribute Habitat bcodmo_name String site_descrip
attribute Habitat description String The habitat where the crab was collected and observed.
attribute Habitat long_name String Habitat
attribute Habitat units String unitless
variable Site String
attribute Site bcodmo_name String site
attribute Site description String Site of observation/collection. RI= Round Island Park; PP=Pepper Park; NC=North Causeway Park; Oslo=Oslo Road; ANA=Anastasia State Park; GTM= Guana-Tolomato-Matanzas NERR; VM=Vilano Inlet; PV= Palm Valley/Nocatee Canoe Launch; YC=St. Augustine Yacht Club; BC=Boating Club Road
attribute Site long_name String Site
attribute Site units String unitless
variable ISO_Date String
attribute ISO_Date bcodmo_name String date
attribute ISO_Date description String Date in ISO format (yyyy-mm-dd)
attribute ISO_Date long_name String ISO Date
attribute ISO_Date nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ (external link)
attribute ISO_Date source_name String ISO_Date
attribute ISO_Date time_precision String 1970-01-01
attribute ISO_Date units String unitless
variable ID String
attribute ID bcodmo_name String individual
attribute ID description String individual ID number given to each crab
attribute ID long_name String ID
attribute ID units String unitless
variable CW float
attribute CW _FillValue float NaN
attribute CW actual_range float 8.4, 24.3
attribute CW bcodmo_name String width
attribute CW description String Size of crab; measured as carapace-width
attribute CW long_name String CW
attribute CW units String millimeters (mm)
variable GW float
attribute GW _FillValue float NaN
attribute GW actual_range float 3.3, 9.7
attribute GW bcodmo_name String width
attribute GW description String Gut width measured as the width of cardiac stomach.
attribute GW long_name String GW
attribute GW units String millimeters (mm)
variable GW_CW float
attribute GW_CW _FillValue float NaN
attribute GW_CW actual_range float 0.017, 0.492
attribute GW_CW bcodmo_name String unknown
attribute GW_CW description String gut-width:carapace-width ratio
attribute GW_CW long_name String GW CW
attribute GW_CW units String unitless
variable Egg_W float
attribute Egg_W _FillValue float NaN
attribute Egg_W actual_range float 0.00533, 0.04273
attribute Egg_W bcodmo_name String weight
attribute Egg_W description String Dry mass of eggs from which lipid were extracted.
attribute Egg_W long_name String Egg W
attribute Egg_W units String grams
variable F_Vial float
attribute F_Vial _FillValue float NaN
attribute F_Vial actual_range float 13.20482, 13.83595
attribute F_Vial bcodmo_name String weight
attribute F_Vial description String Mass of final vial in-which extracted lipids was weighed.
attribute F_Vial long_name String F Vial
attribute F_Vial units String grams
variable Vial_Lipid float
attribute Vial_Lipid _FillValue float NaN
attribute Vial_Lipid actual_range float 13.20915, 13.84335
attribute Vial_Lipid bcodmo_name String lipids_biota
attribute Vial_Lipid description String Mass of extracted lipids in vial.
attribute Vial_Lipid long_name String Vial Lipid
attribute Vial_Lipid units String grams
variable Lipid float
attribute Lipid _FillValue float NaN
attribute Lipid actual_range float 6.9E-4, 0.00767
attribute Lipid bcodmo_name String lipids_biota
attribute Lipid description String Mass of extracted lipids.
attribute Lipid long_name String Lipid
attribute Lipid units String grams
variable Lipid_wt float
attribute Lipid_wt _FillValue float NaN
attribute Lipid_wt actual_range float 0.05472, 0.28441
attribute Lipid_wt bcodmo_name String lipids_biota
attribute Lipid_wt description String Proportion of lipid mass to mass of eggs from which the lipids were extracted
attribute Lipid_wt long_name String Lipid Wt
attribute Lipid_wt units String unitless
variable Lipid_pct float
attribute Lipid_pct _FillValue float NaN
attribute Lipid_pct actual_range float 5.47185, 28.44141
attribute Lipid_pct bcodmo_name String lipids_biota
attribute Lipid_pct description String Concentration of egg lipids in mass-percent of eggs from which lipids were extracted
attribute Lipid_pct long_name String Lipid Pct
attribute Lipid_pct units String unitless
variable Glycogen_W float
attribute Glycogen_W _FillValue float NaN
attribute Glycogen_W actual_range float 4.05, 10.94
attribute Glycogen_W bcodmo_name String weight
attribute Glycogen_W description String Mass of eggs from which glycogen was extracted.
attribute Glycogen_W long_name String Glycogen W
attribute Glycogen_W units String milligrams
variable Glycogen_Conc float
attribute Glycogen_Conc _FillValue float NaN
attribute Glycogen_Conc actual_range float 0.1155, 3.77011
attribute Glycogen_Conc bcodmo_name String unknown
attribute Glycogen_Conc description String Proportion of glycogen mass to mass of eggs from which the glycogen was extracted
attribute Glycogen_Conc long_name String Glycogen Conc
attribute Glycogen_Conc units String unitless
variable Glycogen_pct float
attribute Glycogen_pct _FillValue float NaN
attribute Glycogen_pct actual_range float 1.2E-4, 0.001
attribute Glycogen_pct bcodmo_name String unknown
attribute Glycogen_pct description String Concentration of egg glycogen in mass-percent of eggs from which glycogen was extracted
attribute Glycogen_pct long_name String Glycogen Pct
attribute Glycogen_pct units String unitless

 
ERDDAP, Version 2.22
Disclaimers | Privacy Policy | Contact