BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson,.odvTxt
attribute NC_GLOBAL acquisition_description String Water was collected via Niskin bottles mounted on a rosette, equipped with a\nCTD.\n \nTwo substrates, -glucose and -glucose linked to a 4-methylumbelliferyl (MUF)\nfluorophore, were used to measure glucosidase activities. Five substrates\nlinked to a 7-amido-4-methyl coumarin (MCA) fluorophore, one amino acid \\u2013\nleucine \\u2013 and four oligopeptides \\u2013 the chymotrypsin substrates\nalanine-alanine-phenylalanine (AAF) and alanine-alanine-proline-phenylalanine\n(AAPF), and the trypsin substrates glutamine-alanine-arginine (QAR) and\nphenylalanine-serine-arginine (FSR) \\u2013 were used to measure exo- and endo-\nacting peptidase activities, respectively. Hydrolysis rates of the substrates\nwere measured as an increase in fluorescence as the fluorophore was hydrolyzed\nfrom the substrate over time [as in Hoppe, 1993; Obayashi and Suzuki, 2005].\nIncubations with the seven low molecular weight substrates were set up in a\n96-well plate. For each substrate, triplicate wells were filled with a total\nvolume of 200 L seawater for experimental incubations; triplicate wells were\nfilled with 200 L autoclaved seawater for killed control incubations.\nSubstrate was added at saturating concentrations. A saturation curve was\ndetermined with surface water from each station to determine saturating\nconcentrations of substrate. The saturating concentration was identified as\nthe lowest tested concentration of substrate at which additional substrate did\nnot yield higher rates of hydrolysis. Fluorescence was measured over 24-48\nhours incubation time with a plate reader (TECAN spectrafluor plus; 360 nm\nexcitation, 460 emission), with timepoints taken every 4-6 hours. Hydrolysis\nrates were calculated from the rate of increase of fluorescence in the\nincubation over time relative to a set of standards of known concentration of\nfluorophore. Scripts to calculate hydrolysis rates and produce the figures\nshown here are available in the associated Github repository [Hoarfrost,\n2017].\n \nL = substrate to measure leucine aminopeptidase (L-leucine-7-amido-4 MCA)  \n AAF = substrate to measure chymotrypsin activity: ala-ala-phe-MCA  \n AAPF = substrate to measure chymotrypsin activity: N-succinyl-ala-ala-pro-\nphe-MCA  \n QAR = substrate to measure trypsin activity: Boc-gln-ala-arg-MCA\\u00a0\\u00a0  \n FSR = substrate to measure trypsin activity: N-t-boc-phe-ser-arg-MCA\\u00a0
attribute NC_GLOBAL awards_0_award_nid String 712358
attribute NC_GLOBAL awards_0_award_number String OCE-1332881
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1332881 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String Henrietta N Edmonds
attribute NC_GLOBAL awards_0_program_manager_nid String 51517
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Microbial Activities: Bulk MCAMUF \n   RV/Sonne So248, South and North Pacific, along 180 W \n   P.I.: C. Arnosti (UNC-CH) \n   version: 2018-07-31 \n   NOTE: Date/time and location data from CTD cast data (https://doi.pangaea.de/10.1594/PANGAEA.864673) were joined to original dataset
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3  19 Dec 2019
attribute NC_GLOBAL dataset_current_state String Final and no updates
attribute NC_GLOBAL date_created String 2018-08-06T14:30:10Z
attribute NC_GLOBAL date_modified String 2020-04-27T19:01:47Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.743224.1
attribute NC_GLOBAL Easternmost_Easting double 180.0
attribute NC_GLOBAL geospatial_lat_max double 58.9
attribute NC_GLOBAL geospatial_lat_min double -30.0008
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double 180.0
attribute NC_GLOBAL geospatial_lon_min double -179.0
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL geospatial_vertical_max double 4000.0
attribute NC_GLOBAL geospatial_vertical_min double 20.0
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/743224 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_acronym String Niskin bottle
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 743230
attribute NC_GLOBAL instruments_0_description String A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24, or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.
attribute NC_GLOBAL instruments_0_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/ (external link)
attribute NC_GLOBAL instruments_0_instrument_name String Niskin bottle
attribute NC_GLOBAL instruments_0_instrument_nid String 413
attribute NC_GLOBAL instruments_1_acronym String CTD
attribute NC_GLOBAL instruments_1_dataset_instrument_nid String 743231
attribute NC_GLOBAL instruments_1_description String The Conductivity, Temperature, Depth (CTD) unit is an integrated instrument package designed to measure the conductivity, temperature, and pressure (depth) of the water column.  The instrument is lowered via cable through the water column and permits scientists observe the physical properties in real time via a conducting cable connecting the CTD to a deck unit and computer on the ship. The CTD is often configured with additional optional sensors including fluorometers, transmissometers and/or  radiometers.  It is often combined with a Rosette of water sampling bottles (e.g. Niskin, GO-FLO) for collecting discrete water samples during the cast.  This instrument designation is used when specific make and model are not known.
attribute NC_GLOBAL instruments_1_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L05/current/130/ (external link)
attribute NC_GLOBAL instruments_1_instrument_name String CTD profiler
attribute NC_GLOBAL instruments_1_instrument_nid String 417
attribute NC_GLOBAL instruments_2_acronym String Fluorometer
attribute NC_GLOBAL instruments_2_dataset_instrument_nid String 743232
attribute NC_GLOBAL instruments_2_description String A fluorometer or fluorimeter is a device used to measure parameters of fluorescence: its intensity and wavelength distribution of emission spectrum after excitation by a certain spectrum of light. The instrument is designed to measure the amount of stimulated electromagnetic radiation produced by pulses of electromagnetic radiation emitted into a water sample or in situ.
attribute NC_GLOBAL instruments_2_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L05/current/113/ (external link)
attribute NC_GLOBAL instruments_2_instrument_name String Fluorometer
attribute NC_GLOBAL instruments_2_instrument_nid String 484
attribute NC_GLOBAL keywords String average, bco, bco-dmo, biological, cast, cast_no, chemical, data, dataset, date, depth, depth_m, depth_no, dev, dmo, elapsed, erddap, iso, latitude, longitude, management, oceanography, office, preliminary, profiler, rate, rep1, rep1_rate, rep2, rep2_rate, rep3, rep3_rate, salinity, salinity-temperature-depth, station, station_no, std, std_dev, substrate, temperature, time, time_elapsed_hr, timepoint
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/743224/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/743224 (external link)
attribute NC_GLOBAL Northernmost_Northing double 58.9
attribute NC_GLOBAL param_mapping String {'743224': {'Latitude': 'flag - latitude', 'depth_m': 'flag - depth', 'Longitude': 'flag - longitude', 'ISO_DateTime_UTC': 'flag - time'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/743224/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String University of North Carolina at Chapel Hill
attribute NC_GLOBAL people_0_affiliation_acronym String UNC-Chapel Hill
attribute NC_GLOBAL people_0_person_name String Carol Arnosti
attribute NC_GLOBAL people_0_person_nid String 661940
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_1_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_1_person_name String Nancy Copley
attribute NC_GLOBAL people_1_person_nid String 50396
attribute NC_GLOBAL people_1_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_1_role_type String related
attribute NC_GLOBAL project String Patterns of activities
attribute NC_GLOBAL projects_0_acronym String Patterns of activities
attribute NC_GLOBAL projects_0_description String NSF Award Abstract:\nHeterotrophic microbial communities are key players in the marine carbon cycle, transforming and respiring organic carbon, regenerating nutrients, and acting as the final filter in sediments through which organic matter passes before long-term burial. Microbially-driven carbon cycling in the ocean profoundly affects the global carbon cycle, but key factors determining rates and locations of organic matter remineralization are unclear. In this study, researchers from the University of North Carolina at Chapel Hill will investigate the ability of pelagic microbial communities to initiate the remineralization of polysaccharides and proteins, which together constitute a major pool of organic matter in the ocean. Results from this study will be predictive on a large scale regarding the nature of the microbial response to organic matter input, and will provide a mechanistic framework for interpreting organic matter reactivity in the ocean.\nBroader Impacts: This study will provide scientific training for undergraduate and graduate students from underrepresented groups. The project will also involve German colleagues, thus strengthening international scientific collaboration.
attribute NC_GLOBAL projects_0_end_date String 2017-07
attribute NC_GLOBAL projects_0_geolocation String Atlantic Ocean, Arctic Ocean, Pacific Ocean, Greenland
attribute NC_GLOBAL projects_0_name String Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?
attribute NC_GLOBAL projects_0_project_nid String 712359
attribute NC_GLOBAL projects_0_start_date String 2013-08
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double -30.0008
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String This dataset includes MCAMUF (glucosidase and peptidase) hydrolysis rates to measure microbial enzyme activities in bulk (not filter-fractionated) seawater. Samples were collected on RV/Sonne cruise SO248 in May 2016. Links to archived CTD data are also provided.
attribute NC_GLOBAL time_coverage_end String 2016-05-30T14:22Z
attribute NC_GLOBAL time_coverage_start String 2016-05-02T16:51Z
attribute NC_GLOBAL title String [SO248: Bulk MCAMUF hydrolysis rates] - Microbial enzyme activities: glucosidase and peptidase activities of bulk seawater samples from the RV\\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016 (Latitudinal and depth-related contrasts in enzymatic capabilities of pelagic microbial communities: Predictable patterns in the ocean?)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -179.0
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.5
variable station_no String
attribute station_no bcodmo_name String station
attribute station_no description String refers to station number for cruise
attribute station_no long_name String Station No
attribute station_no units String unitless
variable cast_no String
attribute cast_no bcodmo_name String cast
attribute cast_no description String cast number (refers to cast of CTD/Niskin bottles on cruise)
attribute cast_no long_name String Cast No
attribute cast_no units String unitless
variable time double
attribute time _CoordinateAxisType String Time
attribute time actual_range double 1.46220786E9, 1.46461812E9
attribute time axis String T
attribute time bcodmo_name String ISO_DateTime_UTC
attribute time description String date and time in ISO format (yyyy-mm-ddTHH:MM:SS
attribute time ioos_category String Time
attribute time long_name String ISO Date Time UTC
attribute time nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/ (external link)
attribute time source_name String ISO_DateTime_UTC
attribute time standard_name String time
attribute time time_origin String 01-JAN-1970 00:00:00
attribute time time_precision String 1970-01-01T00:00Z
attribute time units String seconds since 1970-01-01T00:00:00Z
variable latitude double
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double -30.0008, 58.9
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String latitude; north is positive
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude double
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -179.0, 180.0
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String longitude; east is postivie
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable depth_no String
attribute depth_no bcodmo_name String unknown
attribute depth_no description String sequence of depths sampled (1 is surface; higher numbers at greater depths)
attribute depth_no long_name String Depth
attribute depth_no standard_name String depth
attribute depth_no units String unitless
variable depth double
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth _FillValue double NaN
attribute depth actual_range double 20.0, 4000.0
attribute depth axis String Z
attribute depth bcodmo_name String depth
attribute depth colorBarMaximum double 8000.0
attribute depth colorBarMinimum double -8000.0
attribute depth colorBarPalette String TopographyDepth
attribute depth description String actual depth at which water collected
attribute depth ioos_category String Location
attribute depth long_name String Depth
attribute depth nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ (external link)
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m
variable substrate String
attribute substrate bcodmo_name String unknown
attribute substrate description String Substrates for measurement of enzymatic activities. ara:arabinogalactan:\nL = substrate to measure leucine aminopeptidase (L-leucine-7-amido-4 MCA)\nAAF = substrate to measure chymotrypsin activity: ala-ala-phe-MCA\nAAPF = substrate to measure chymotrypsin activity: N-succinyl-ala-ala-pro-phe-MCA\nQAR = substrate to measure trypsin activity: Boc-gln-ala-arg-MCA  \nFSR = substrate to measure trypsin activity: N-t-boc-phe-ser-arg-MCA
attribute substrate long_name String Substrate
attribute substrate units String unitless
variable timepoint byte
attribute timepoint _FillValue byte 127
attribute timepoint actual_range byte 1, 4
attribute timepoint bcodmo_name String time_point
attribute timepoint description String sampling point post-incubation
attribute timepoint long_name String Timepoint
attribute timepoint units String unitless
variable time_elapsed_hr float
attribute time_elapsed_hr _FillValue float NaN
attribute time_elapsed_hr actual_range float 11.1, 74.8
attribute time_elapsed_hr bcodmo_name String time_elapsed
attribute time_elapsed_hr description String incubation time
attribute time_elapsed_hr long_name String Time Elapsed Hr
attribute time_elapsed_hr nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ELTMZZZZ/ (external link)
attribute time_elapsed_hr units String hours
variable rep1_rate double
attribute rep1_rate _FillValue double NaN
attribute rep1_rate actual_range double 0.0, 848.319433
attribute rep1_rate bcodmo_name String unknown
attribute rep1_rate description String replicate 1 hydrolysis rate
attribute rep1_rate long_name String Rep1 Rate
attribute rep1_rate units String nanomoles/liter/hour (nmol L-1 h-1)
variable rep2_rate double
attribute rep2_rate _FillValue double NaN
attribute rep2_rate actual_range double 0.0, 959.721043
attribute rep2_rate bcodmo_name String unknown
attribute rep2_rate description String replicate 2 hydrolysis rate
attribute rep2_rate long_name String Rep2 Rate
attribute rep2_rate units String nanomoles/liter/hour (nmol L-1 h-1)
variable rep3_rate double
attribute rep3_rate _FillValue double NaN
attribute rep3_rate actual_range double 0.0, 824.866787
attribute rep3_rate bcodmo_name String unknown
attribute rep3_rate description String replicate 3 hydrolysis rate
attribute rep3_rate long_name String Rep3 Rate
attribute rep3_rate units String nanomoles/liter/hour (nmol L-1 h-1)
variable average double
attribute average _FillValue double NaN
attribute average actual_range double 0.0, 790.116399
attribute average bcodmo_name String unknown
attribute average description String average of hydrolysis rates
attribute average long_name String Average
attribute average units String nanomoles/liter/hour (nmol L-1 h-1)
variable std_dev double
attribute std_dev _FillValue double NaN
attribute std_dev actual_range double 0.0, 519.337604
attribute std_dev bcodmo_name String unknown
attribute std_dev description String std deviation of hydrolysis rates
attribute std_dev long_name String Std Dev
attribute std_dev units String nanomoles/liter/hour (nmol L-1 h-1)

 
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