BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv
attribute NC_GLOBAL acquisition_description String In situ carbonate rocks, and carbonate rocks, woods, and bones deployed for 7\nyears were collected across seepage gradients at Mound 12 using HOV Alvin, and\nwashed in miliQ water onboard. Before preserving, the sample was kept cold and\nanimals were picked to sample tissue for isotope analysis (see datasets \\\"[AT\n37-13 Colonization experiment isotopes](\\\\\"https://www.bco-\ndmo.org/dataset/747645\\\\\")\\\" and [\\\"AT37-13 Carbonate rocks\nisotopes](\\\\\"https://www.bco-dmo.org/dataset/747575\\\\\")\\\" for isotopic data).\nThe remaining washed sample was sieved through 0.3 mm mesh, separating the\nsample in two fractions (a fine fraction with the meiofauna, and a coarser one\nwith the macrofauna), both preserved in 96% Ethanol. In the laboratory, the\nsamples were washed in distilled water and sorted, and the animals were\nidentified to major taxa, counted and preserved in 96% Ethanol.
attribute NC_GLOBAL awards_0_award_nid String 710021
attribute NC_GLOBAL awards_0_award_number String OCE-1634172
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1634172 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String Michael E. Sieracki
attribute NC_GLOBAL awards_0_program_manager_nid String 50446
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Hard substrate community \n  PI: Lisa Levin \n  Data Version 1: 2020-01-09
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3  19 Dec 2019
attribute NC_GLOBAL date_created String 2018-10-09T19:03:25Z
attribute NC_GLOBAL date_modified String 2020-01-13T17:40:49Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.747699.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/747699 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String acari, alvin, Alvin_Dive, amphipoda, anomura, anthozoa, aplacophora, asteroidea, bco, bco-dmo, biological, bivalvia, brachyura, chemical, cruise, cumacea, data, dataset, dive, dmo, erddap, gastropoda, habitat, hydrozoa, isopoda, management, oceanography, office, ophiuroidea, ostracoda, plathelminthes, polychaeta, polyplacophora, preliminary, sample, shrimp, sipuncula, tanaidacea
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/747699/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/747699 (external link)
attribute NC_GLOBAL param_mapping String {'747699': {}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/747699/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String University of California-San Diego
attribute NC_GLOBAL people_0_affiliation_acronym String UCSD-SIO
attribute NC_GLOBAL people_0_person_name String Lisa A Levin
attribute NC_GLOBAL people_0_person_nid String 51242
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of California-San Diego
attribute NC_GLOBAL people_1_affiliation_acronym String UCSD-SIO
attribute NC_GLOBAL people_1_person_name String Gregory Rouse
attribute NC_GLOBAL people_1_person_nid String 51433
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String University of California-San Diego
attribute NC_GLOBAL people_2_affiliation_acronym String UCSD-SIO
attribute NC_GLOBAL people_2_person_name String Lisa A Levin
attribute NC_GLOBAL people_2_person_nid String 51242
attribute NC_GLOBAL people_2_role String Contact
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Shannon Rauch
attribute NC_GLOBAL people_3_person_nid String 51498
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL people_4_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_4_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_4_person_name String Karen Soenen
attribute NC_GLOBAL people_4_person_nid String 748773
attribute NC_GLOBAL people_4_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_4_role_type String related
attribute NC_GLOBAL project String Costa Rica Seeps
attribute NC_GLOBAL projects_0_acronym String Costa Rica Seeps
attribute NC_GLOBAL projects_0_description String NSF abstract:\nIf life were to disappear from the deep sea, would we notice? We only have a cursory understanding of this vast region and the connectivity among its communities and the rest of the oceans, and yet the ecosystems of the deep sea have been implicated in the larger function of the global marine ecosystems. We now rely on the deep ocean for food, energy, novel drugs and materials, and for its role in the global cycling of carbon, as well as for supporting services such as habitat creation, nutrient replenishment for shallow waters, and the maintenance of biodiversity. Cold seeps, active areas of the seafloor where methane and other chemicals are released, are key features along the continental margins worldwide. To characterize how methane seep communities interact with the surrounding ecosystems and vice versa, we will study methane seeps off the Pacific coast of Costa Rica in 2017 and 2018. It is the sphere of influence around the seep, both along the seafloor and up into the water column, that we seek to better understand. We will map the structure and the chemistry surrounding these habitats using a novel 3-dimensional framework, combining typical transects with vertical characterizations of the water column just above the seafloor. This will include measurements of methane flux into the water column and changes in the overlying carbonate chemistry and oxygen levels that are critical to our understanding of the effect of warming, oxygen loss and ocean acidification in this region. Within this framework, we will collect seep organisms in sediments and on rocks (including all sizes from microbes to large animals), and transplant some of these from within the area of seep influence to the background deep sea, and vice-versa. Together, these studies will help us to measure the size of the seep sphere of influence, and also demonstrate the role of these seeps within the deep sea and the greater, global, marine ecosystem. We will share this information with a group of teachers during a series of workshops in the San Diego area, at an exhibit at the Birch Aquarium, and through the work of an artist who has worked extensively with marine organisms in extreme environments.\nChemosynthetic ecosystems are inextricably linked to the broader world-ocean biome and global biogeochemical cycles in ways that we are just beginning to understand. This research will identify the form, extent, and nature of the physical, chemical, and biological linkages between methane seeps and the surrounding deep-sea ecosystem. The proposed research builds critical understanding of the structural and functional processes that underpin the ecosystem services provided by chemosynthetic ecosystems. We target a critical continental margin, Costa Rica, where methane fates and dynamics loom large and play out in an setting that reflects many oceanographic stressors. We will use quantitative sampling and manipulative studies within a 3-dimensional oceanographic framework. We will ask what are the shapes of the diversity and density functions for organisms of different size classes and trophic position over the transition from the seep habitat through the ecotone to the background deep sea? Further, we will ask how do depth, dissolved oxygen concentrations, pH and carbonate ion availability, relative rates of fluid flux, and substrate (biogenic, authigenic carbonate, sediments) alter these linkages and interactions with the surrounding deep sea? Evidence for distinct transitional communities and biotic patterns in density and alpha and beta diversity will be quantified and placed in a global biogeographic context. All of these investigations will occur across biological size spectra: for microorganisms (archaea, bacteria, microeukaryotes), the macrofauna, and the megafauna that form biogenic habitats. Our research results will be interpreted in the context of potential effects of global ocean change in the equatorial Pacific to determine how the linkages with the surrounding deep sea will be altered as anthropogenic impacts proceed in the future. \nRelated publications:\nLevin, L.A., V.J. Orphan, G.W. Rouse, W. Ussler, A. E. Rathburn, G. S. Cook, S. Goffredi, E. Perez, A. Waren, B. Grupe, G. Chadwick, B. Strickrott. (2012). A hydrothermal seep on the Costa Rica margin: Middle ground in a continuum of reducing ecosystems. Proc. Royal Soc. B. 279: 2580-88 doi: 10.1098/rspb.2012.0205\nSahling, H., Masson, D. G., Ranero, C. R., Hühnerbach, V., Weinrebe, W., Klaucke, I., & Suess, E. (2008). Fluid seepage at the continental margin offshore Costa Rica and southern Nicaragua. Geochemistry, Geophysics, Geosystems 9: doi: 10.1029/2008GC001978
attribute NC_GLOBAL projects_0_end_date String 2019-09
attribute NC_GLOBAL projects_0_geolocation String Costa Rica Pacific Margin
attribute NC_GLOBAL projects_0_name String Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea
attribute NC_GLOBAL projects_0_project_nid String 648472
attribute NC_GLOBAL projects_0_start_date String 2016-10
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL subsetVariables String Cruise,Cumacea,Hydrozoa,Sipuncula
attribute NC_GLOBAL summary String Matrix of taxon (columns) by sample (rows) for substrates collected using HOV Alvin on R/V Atlantis cruise AT37-13 in the Pacific Ocean off Costa Rica from May to June 2017
attribute NC_GLOBAL title String [Hard Substrates Community Matrix, AT37-13 & AT42-03] - Matrix of taxon by sample for hard substrates collected by HOV Alvin during R/V Atlantis cruise AT37-13 and AT42-03 in the Pacific margin of Costa Rica in 2017 and 2018. (Collaborative research: Quantifying the biological, chemical, and physical linkages between chemosynthetic communities and the surrounding deep sea)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable Cruise String
attribute Cruise bcodmo_name String cruiseid
attribute Cruise description String Cruise ID: AT37-13 or AT42-03
attribute Cruise long_name String Cruise
attribute Cruise units String unitless
variable Sample String
attribute Sample bcodmo_name String sample
attribute Sample description String Substrate type and substrate number
attribute Sample long_name String Sample
attribute Sample nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ (external link)
attribute Sample units String unitless
variable Alvin_Dive short
attribute Alvin_Dive _FillValue short 32767
attribute Alvin_Dive actual_range short 4817, 4917
attribute Alvin_Dive bcodmo_name String dive_id
attribute Alvin_Dive description String Number of the Alivn dive from which the sample was collected
attribute Alvin_Dive long_name String Alvin Dive
attribute Alvin_Dive units String unitless
variable Habitat String
attribute Habitat bcodmo_name String site_descrip
attribute Habitat description String Seepage activity (active or inactive)
attribute Habitat long_name String Habitat
attribute Habitat units String unitless
variable Acari byte
attribute Acari _FillValue byte 127
attribute Acari actual_range byte 0, 3
attribute Acari bcodmo_name String count
attribute Acari description String Number of individuals identified from taxon Acari
attribute Acari long_name String Acari
attribute Acari units String unitless
variable Amphipoda byte
attribute Amphipoda _FillValue byte 127
attribute Amphipoda actual_range byte 0, 9
attribute Amphipoda bcodmo_name String count
attribute Amphipoda description String Number of individuals identified from taxon Amphipoda
attribute Amphipoda long_name String Amphipoda
attribute Amphipoda units String unitless
variable Anomura byte
attribute Anomura _FillValue byte 127
attribute Anomura actual_range byte 0, 86
attribute Anomura bcodmo_name String count
attribute Anomura colorBarMaximum double 10.0
attribute Anomura colorBarMinimum double -10.0
attribute Anomura description String Number of individuals identified from taxon Anomura
attribute Anomura long_name String Anomura
attribute Anomura units String unitless
variable Brachyura byte
attribute Brachyura _FillValue byte 127
attribute Brachyura actual_range byte 0, 1
attribute Brachyura bcodmo_name String count
attribute Brachyura description String Number of individuals identified from taxon Brachyura
attribute Brachyura long_name String Brachyura
attribute Brachyura units String unitless
variable Cumacea byte
attribute Cumacea _FillValue byte 127
attribute Cumacea actual_range byte 0, 0
attribute Cumacea bcodmo_name String count
attribute Cumacea description String Number of individuals identified from taxon Cumacea
attribute Cumacea long_name String Cumacea
attribute Cumacea units String unitless
variable Isopoda byte
attribute Isopoda _FillValue byte 127
attribute Isopoda actual_range byte 0, 2
attribute Isopoda bcodmo_name String count
attribute Isopoda description String Number of individuals identified from taxon Isopoda
attribute Isopoda long_name String Isopoda
attribute Isopoda units String unitless
variable Ostracoda byte
attribute Ostracoda _FillValue byte 127
attribute Ostracoda actual_range byte 0, 5
attribute Ostracoda bcodmo_name String count
attribute Ostracoda description String Number of individuals identified from taxon Ostracoda
attribute Ostracoda long_name String Ostracoda
attribute Ostracoda units String unitless
variable Shrimp byte
attribute Shrimp _FillValue byte 127
attribute Shrimp actual_range byte 0, 2
attribute Shrimp bcodmo_name String count
attribute Shrimp description String Number of individuals identified from taxon Shrimp
attribute Shrimp long_name String Shrimp
attribute Shrimp units String unitless
variable Tanaidacea byte
attribute Tanaidacea _FillValue byte 127
attribute Tanaidacea actual_range byte 0, 5
attribute Tanaidacea bcodmo_name String count
attribute Tanaidacea description String Number of individuals identified from taxon Tanaidacea
attribute Tanaidacea long_name String Tanaidacea
attribute Tanaidacea units String unitless
variable Anthozoa byte
attribute Anthozoa _FillValue byte 127
attribute Anthozoa actual_range byte 0, 10
attribute Anthozoa bcodmo_name String count
attribute Anthozoa description String Number of individuals identified from taxon Anthozoa
attribute Anthozoa long_name String Anthozoa
attribute Anthozoa units String unitless
variable Asteroidea byte
attribute Asteroidea _FillValue byte 127
attribute Asteroidea actual_range byte 0, 1
attribute Asteroidea bcodmo_name String count
attribute Asteroidea description String Number of individuals identified from taxon Asteroidea
attribute Asteroidea long_name String Asteroidea
attribute Asteroidea units String unitless
variable Ophiuroidea byte
attribute Ophiuroidea _FillValue byte 127
attribute Ophiuroidea actual_range byte 0, 20
attribute Ophiuroidea bcodmo_name String count
attribute Ophiuroidea description String Number of individuals identified from taxon Ophiuroidea
attribute Ophiuroidea long_name String Ophiuroidea
attribute Ophiuroidea units String unitless
variable Aplacophora byte
attribute Aplacophora _FillValue byte 127
attribute Aplacophora actual_range byte 0, 8
attribute Aplacophora bcodmo_name String count
attribute Aplacophora description String Number of individuals identified from taxon Aplacophora
attribute Aplacophora long_name String Aplacophora
attribute Aplacophora units String unitless
variable Plathelminthes byte
attribute Plathelminthes _FillValue byte 127
attribute Plathelminthes actual_range byte 0, 1
attribute Plathelminthes bcodmo_name String count
attribute Plathelminthes description String Number of individuals identified from taxon Plathelminthes
attribute Plathelminthes long_name String Plathelminthes
attribute Plathelminthes units String unitless
variable Bivalvia byte
attribute Bivalvia _FillValue byte 127
attribute Bivalvia actual_range byte 0, 26
attribute Bivalvia bcodmo_name String count
attribute Bivalvia description String Number of individuals identified from taxon Bivalvia
attribute Bivalvia long_name String Bivalvia
attribute Bivalvia units String unitless
variable Gastropoda short
attribute Gastropoda _FillValue short 32767
attribute Gastropoda actual_range short 0, 800
attribute Gastropoda bcodmo_name String count
attribute Gastropoda description String Number of individuals identified from taxon Gastropoda
attribute Gastropoda long_name String Gastropoda
attribute Gastropoda units String unitless
variable Polyplacophora byte
attribute Polyplacophora _FillValue byte 127
attribute Polyplacophora actual_range byte 0, 5
attribute Polyplacophora bcodmo_name String count
attribute Polyplacophora description String Number of individuals identified from taxon Polyplacophora
attribute Polyplacophora long_name String Polyplacophora
attribute Polyplacophora units String unitless
variable Polychaeta short
attribute Polychaeta _FillValue short 32767
attribute Polychaeta actual_range short 1, 139
attribute Polychaeta bcodmo_name String count
attribute Polychaeta description String Number of individuals identified from taxon Polychaeta
attribute Polychaeta long_name String Polychaeta
attribute Polychaeta units String unitless
variable Hydrozoa byte
attribute Hydrozoa _FillValue byte 127
attribute Hydrozoa actual_range byte 0, 0
attribute Hydrozoa bcodmo_name String count
attribute Hydrozoa description String Number of individuals identified from taxon Hydrozoa
attribute Hydrozoa long_name String Hydrozoa
attribute Hydrozoa units String unitless
variable Sipuncula byte
attribute Sipuncula _FillValue byte 127
attribute Sipuncula actual_range byte 0, 0
attribute Sipuncula bcodmo_name String count
attribute Sipuncula description String Number of individuals identified from taxon Sipincula
attribute Sipuncula long_name String Sipuncula
attribute Sipuncula units String unitless

 
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