BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv
attribute NC_GLOBAL acquisition_description String A batch culture (1.5L) of Trichodesmium erythraeum sp. IMS101 was grown in a\n27\\u00b0C incubator with a 14:10 light cycle that ramps up and down mimicking\ndawn and dusk. Sampling occurred every 1-3 hours with concentrated sampling at\ndawn and dusk. 70mL of the culture was sterically subsampled and collected on\n0.2mm Supor filters, then frozen at -80\\u00b0C. 10mL was collected and\nfiltered on combusted GFF filters for CHN analysis.\n \n\\u00a0\n \nProteins were extracted in sodium dodecyl sulfate and digested in gel similar\nto Saito et al., 2014 (Science). Peptides were analyzed by LC-MS/MS on a\nThermo Orbitrap Fusion using LC x LC/MS chromatography with high and low pH\nreversed phase chromatography.
attribute NC_GLOBAL awards_0_award_nid String 646121
attribute NC_GLOBAL awards_0_award_number String GBMF3934
attribute NC_GLOBAL awards_0_funder_name String Gordon and Betty Moore Foundation
attribute NC_GLOBAL awards_0_funding_acronym String GBMF
attribute NC_GLOBAL awards_0_funding_source_nid String 361
attribute NC_GLOBAL awards_1_award_nid String 646122
attribute NC_GLOBAL awards_1_award_number String GBMF3782
attribute NC_GLOBAL awards_1_data_url String https://www.moore.org/grant-detail?grantId=GBMF3782 (external link)
attribute NC_GLOBAL awards_1_funder_name String Gordon and Betty Moore Foundation: Marine Microbiology Initiative
attribute NC_GLOBAL awards_1_funding_acronym String MMI
attribute NC_GLOBAL awards_1_funding_source_nid String 385
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Diel proteomes Tricho IMS101 \n  PI: Mak Saito \n  Data Version 1: 2019-12-10
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3  19 Dec 2019
attribute NC_GLOBAL dataset_current_state String Final and no updates
attribute NC_GLOBAL date_created String 2019-12-10T17:10:43Z
attribute NC_GLOBAL date_modified String 2020-02-07T18:43:23Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.783873.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/783873 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_acronym String Mass Spec
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 783878
attribute NC_GLOBAL instruments_0_description String General term for instruments used to measure the mass-to-charge ratio of ions; generally used to find the composition of a sample by generating a mass spectrum representing the masses of sample components.
attribute NC_GLOBAL instruments_0_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L05/current/LAB16/ (external link)
attribute NC_GLOBAL instruments_0_instrument_name String Mass Spectrometer
attribute NC_GLOBAL instruments_0_instrument_nid String 685
attribute NC_GLOBAL instruments_0_supplied_name String Thermo Orbitrap Fusion mass spectrometer
attribute NC_GLOBAL keywords String abundance, bco, bco-dmo, biological, chemical, cnratio, data, dataset, dawn, dmo, erddap, hours, hours_post_dawn, management, name, oceanography, office, post, preliminary, protein, protein_name, relative, relative_protein_abundance
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/783873/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/783873 (external link)
attribute NC_GLOBAL param_mapping String {'783873': {}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/783873/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_0_affiliation_acronym String WHOI
attribute NC_GLOBAL people_0_person_name String Mak A. Saito
attribute NC_GLOBAL people_0_person_nid String 50985
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_1_affiliation_acronym String WHOI
attribute NC_GLOBAL people_1_person_name String Noelle Held
attribute NC_GLOBAL people_1_person_nid String 787371
attribute NC_GLOBAL people_1_role String Student
attribute NC_GLOBAL people_1_role_type String related
attribute NC_GLOBAL people_2_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_2_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_2_person_name String Amber D. York
attribute NC_GLOBAL people_2_person_nid String 643627
attribute NC_GLOBAL people_2_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL project String MM Proteins and Organics Tech,MM Saito
attribute NC_GLOBAL projects_0_acronym String MM Proteins and Organics Tech
attribute NC_GLOBAL projects_0_description String In support of acquiring a high resolution mass spectrometer that incorporates the latest technologies for analyzing proteins and other organic materials.
attribute NC_GLOBAL projects_0_end_date String 2014-06
attribute NC_GLOBAL projects_0_name String New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms
attribute NC_GLOBAL projects_0_project_nid String 786670
attribute NC_GLOBAL projects_0_project_website String https://www.moore.org/grant-detail?grantId=GBMF3934 (external link)
attribute NC_GLOBAL projects_0_start_date String 2013-06
attribute NC_GLOBAL projects_1_acronym String MM Saito
attribute NC_GLOBAL projects_1_description String In support of obtaining deeper knowledge of major biogeochemically relevant proteins to inform a mechanistic understanding of global marine biogeochemical cycles.
attribute NC_GLOBAL projects_1_end_date String 2019-12
attribute NC_GLOBAL projects_1_name String Marine Microbial Investigator Award: Investigator Mak Saito
attribute NC_GLOBAL projects_1_project_nid String 786672
attribute NC_GLOBAL projects_1_start_date String 2013-05
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String Diel proteomes of cultured Trichodesmium erythraeum sp. IMS101 from laboratory experiments conducted in November of 2018.
attribute NC_GLOBAL title String [Diel proteomes Trichodesmium IMS101] - Diel proteomes of cultured Trichodesmium erythraeum sp. IMS101 from laboratory experiments conducted in November of 2018 (New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.5
variable protein_name String
attribute protein_name bcodmo_name String sample_descrip
attribute protein_name description String Protein name
attribute protein_name long_name String Protein Name
attribute protein_name units String unitless
variable hours_post_dawn byte
attribute hours_post_dawn _FillValue byte 127
attribute hours_post_dawn actual_range byte 0, 23
attribute hours_post_dawn bcodmo_name String time_elapsed
attribute hours_post_dawn description String Hours post dawn. Hours after incubator light is on
attribute hours_post_dawn long_name String Hours Post Dawn
attribute hours_post_dawn nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ELTMZZZZ/ (external link)
attribute hours_post_dawn units String hours
variable cnratio double
attribute cnratio _FillValue double NaN
attribute cnratio actual_range double 3.148860158, 4.334379031
attribute cnratio bcodmo_name String C_to_N
attribute cnratio description String POC:PON ratio of culture. Ratio of particulate organic carbon to particulate organic nitrogen
attribute cnratio long_name String Cnratio
attribute cnratio units String dimensionless
variable relative_protein_abundance float
attribute relative_protein_abundance _FillValue float NaN
attribute relative_protein_abundance actual_range float 0.0, 1126.7
attribute relative_protein_abundance bcodmo_name String proteins
attribute relative_protein_abundance description String Relative protein abundance. Normalized spectral counts.
attribute relative_protein_abundance long_name String Relative Protein Abundance
attribute relative_protein_abundance units String unitless

 
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