BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String Location:\n \nEast and West Banks of the Flower Garden Banks National Marine Sanctuary\n(FGBNMS)\\u00a0\n \nSampling Events:\\u00a0\n \nNOAA FGBNMS Cruise July 2016, NOAA FGBNMS Cruise August 2016  \n Hurricane Harvey FGB October 2017, Hurricane Harvey FGB October 2018\n \nMethodology:\n \nV4-16S bacterial communities libraries were prepared and PE 250bp reads were\ngenerated using Illumina MiSeq platform.\\u00a0\n \nSampling and analytical procedures:\n \nSamples were flash frozen in liquid nitrogen and stored at -20\\u2103 until\nfurther processing. DNA was extracted from 250 mg of sponge sample using the\nNucleospin Soil DNA extraction kit (Takara Bio) or the DNeasy PowerSoil DNA\nextraction kit (QIAGEN).\\u00a0\\u00a0
attribute NC_GLOBAL awards_0_award_nid String 746813
attribute NC_GLOBAL awards_0_award_number String OCE-1800914
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1800914 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String Daniel Thornhill
attribute NC_GLOBAL awards_0_program_manager_nid String 722161
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Sponge-Associated Microbial Communities (via 16S-V4 rRNA amplicon  sequencing) Following Storm-Driven Flooding \n  PI: Adrienne Simoes Correa \n  Data Version 1: 2020-07-23
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3  19 Dec 2019
attribute NC_GLOBAL dataset_current_state String Final and no updates
attribute NC_GLOBAL date_created String 2020-06-30T20:47:45Z
attribute NC_GLOBAL date_modified String 2020-07-24T18:14:00Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.817436.1
attribute NC_GLOBAL Easternmost_Easting double -93.6002
attribute NC_GLOBAL geospatial_lat_max double 27.9078
attribute NC_GLOBAL geospatial_lat_min double 27.8819
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -93.6002
attribute NC_GLOBAL geospatial_lon_min double -93.62829
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL geospatial_vertical_max double 28.0
attribute NC_GLOBAL geospatial_vertical_min double 16.5
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/817436 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_acronym String Automated Sequencer
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 817437
attribute NC_GLOBAL instruments_0_description String General term for a laboratory instrument used for deciphering the order of bases in a strand of DNA. Sanger sequencers detect fluorescence from different dyes that are used to identify the A, C, G, and T extension reactions. Contemporary or Pyrosequencer methods are based on detecting the activity of DNA polymerase (a DNA synthesizing enzyme) with another chemoluminescent enzyme. Essentially, the method allows sequencing of a single strand of DNA by synthesizing the complementary strand along it, one base pair at a time, and detecting which base was actually added at each step.
attribute NC_GLOBAL instruments_0_instrument_name String Automated DNA Sequencer
attribute NC_GLOBAL instruments_0_instrument_nid String 649
attribute NC_GLOBAL instruments_0_supplied_name String Illumina MiSeq Platform
attribute NC_GLOBAL keywords String accession, bank, bco, bco-dmo, biological, chemical, collection, Collection_Date_End, data, dataset, date, depth, Depth_max, Depth_min, dmo, end, erddap, latitude, longitude, management, name, oceanography, office, preliminary, sample, Sample_Name, species, sra, start, time
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/817436/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/817436 (external link)
attribute NC_GLOBAL Northernmost_Northing double 27.9078
attribute NC_GLOBAL param_mapping String {'817436': {'Lat': 'master - latitude', 'Depth_max': 'master - depth', 'Long': 'master - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/817436/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Rice University
attribute NC_GLOBAL people_0_person_name String Adrienne Simoes Correa
attribute NC_GLOBAL people_0_person_nid String 713331
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of Houston
attribute NC_GLOBAL people_1_affiliation_acronym String UH-Clearlake
attribute NC_GLOBAL people_1_person_name String Lory Santiago-Vazquez
attribute NC_GLOBAL people_1_person_nid String 746825
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Rice University
attribute NC_GLOBAL people_2_person_name String Amanda Shore
attribute NC_GLOBAL people_2_person_nid String 817444
attribute NC_GLOBAL people_2_role String Contact
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Amber D. York
attribute NC_GLOBAL people_3_person_nid String 643627
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL project String Rapid Reefs Harvey
attribute NC_GLOBAL projects_0_acronym String Rapid Reefs Harvey
attribute NC_GLOBAL projects_0_description String NSF Award Abstract:\nCoral reefs are ecologically and economically important ecosystems, and are threatened by a variety of global (climate change) and local (overfishing, pollution) stressors. Anthropogenic climate change is increasing the frequency and severity of storms, which can physically damage reef structures and reduce reef health through changes in seawater quality. In August of 2017, Hurricane Harvey caused widespread flooding in southeast Texas when it released more than 50 trillion liters of rain, which then accumulated along the Texas Shelf. This runoff is expected to impact nearby coral reefs in the Flower Garden Banks National Marine Sanctuary (FGBNMS, northwest Gulf of Mexico) via eddies and jets that transport coastal waters offshore. Findings from this project will allow managers to quickly predict whether extreme storm events are likely to induce reef mortality and ecosystem decline due to freshwater accumulation, by tracking of low salinity water masses coupled with microbial community characterization and metrics of coral health. These data are critical to managing coastal ecosystems, including the high coral cover reefs in the FGBNMS, and will help stakeholders (e.g., diving and fishing communities) plan for and minimize disruption to their livelihoods following these storms. Results will be communicated broadly across scientific arenas, in graduate and undergraduate education and training programs, and to the general public through outreach. The investigators have seven 7 square meter 2-D Reef Replicas from 2014 depicting representative FGBNMS reef bottoms, and will construct additional 2-D Reef Replicas from both banks following the arrival of Harvey runoff, allowing the public to directly experience and quantify the effects of Hurricane Harvey on local reefs using quadrats and identification guides. This project will also synergize with NSF REU programs at Boston University and Texas A&M University, providing transformative research experiences for undergraduates. One post-doctoral scholar, four graduate students, a technician and more than 5 undergraduates will be involved in all aspects of the research. All datasets will be made freely available to the public, and will serve as an important set of baselines for future lines of inquiry into the processes by which hurricanes and other extreme storms impact reef health.\nHurricanes and other extreme storm events can decimate coral reefs through wave-driven physical damage. Freshwater runoff from extreme storms is also potentially detrimental to reefs but has received comparatively less attention. This research will provide unprecedented resolution on how hurricanes and other extreme storm events may trigger cascading interactions among water chemistry, declines in metazoan health and shifts in their associated microbial communities, ultimately resulting in coral reef decline. The freshwater runoff initiated by Hurricane Harvey is likely to impact reefs within the FGBNMS, one of the few remaining coral-dominated reefs in the greater Caribbean. The effects of Harvey runoff will be compared to a previously documented storm-driven runoff event that was associated with invertebrate mortality on the same reef system. Sampling seawater chemistry, microbial communities (water column and benthic), and host gene expression and proteomics before, immediately after, and six months after Harvey runoff enters the FGBNMS will allow us to identify commonalities among large-scale freshwater runoff events and track the response of benthic invertebrate health, microbial community diversity, and the trajectory of reef community recovery or decline. The investigators will determine if changes in water chemistry induce pelagic microbial shifts, if microbial communities typically associated with corals and sponges are altered, and whether feedbacks occur between these potential drivers of benthic invertebrate mortality.
attribute NC_GLOBAL projects_0_end_date String 2019-11
attribute NC_GLOBAL projects_0_geolocation String Flower Garden Banks National Marine Sanctuary, Northwest Gulf of Mexico
attribute NC_GLOBAL projects_0_name String RAPID: Collaborative Research: Impact of freshwater runoff from Hurricane Harvey on coral reef benthic organisms and associated microbial communities
attribute NC_GLOBAL projects_0_project_nid String 746814
attribute NC_GLOBAL projects_0_start_date String 2017-12
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 27.8819
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String To document the effects of storm-driven freshwater runoff on\\u00a0sponge-\nassociated microbiomes, we leveraged the heavy rainfall\\u00a0associated with\nTax Day Flooding (July 2016) and Hurricane Harvey\\u00a0(August 2017) to\ncharacterize sponge-associated bacterial communities\\u00a0at five time points:\nin July 2016 (at detection of the mortality\\u00a0event), one month after the\nmortality event (August 2016), immediately\\u00a0after Hurricane Harvey\n(September 2017), one month after Hurricane\\u00a0Harvey (October 2017), and\napproximately one year following Hurricane\\u00a0Harvey (October 2018).\n \nThese data contain Sequence Read Archive (SRA) and BioSample accession numbers\nassociated with BioProject\\u00a0PRJNA605902\n(see\\u00a0[https://www.ncbi.nlm.nih.gov/bioproject/605902](\\\\https://www.ncbi.nlm.nih.gov/bioproject/605902\\\\))\\u00a0at\nThe National Center for Biotechnology Information.
attribute NC_GLOBAL title String [Sponge-Associated Microbial Communities (via 16S-V4 rRNA amplicon  sequencing) Following Storm-Driven Flooding] - SRA accessions and collection information for 16S-V4 rRNA amplicon data from invertebrates sampled at Flower Garden Banks National Marine Sanctuary, Gulf of Mexico following Tax Day Flooding (2016), Hurricane Harvey (2017), and a no flooding year (2018) (RAPID: Collaborative Research: Impact of freshwater runoff from Hurricane Harvey on coral reef benthic organisms and associated microbial communities)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -93.62829
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.5
variable Sample_Name String
attribute Sample_Name bcodmo_name String sample
attribute Sample_Name description String Sample name
attribute Sample_Name long_name String Sample Name
attribute Sample_Name nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ (external link)
attribute Sample_Name units String unitless
variable Collection_Date_Start String
attribute Collection_Date_Start bcodmo_name String date
attribute Collection_Date_Start description String Sample collection date (start of date range) in ISO 8601 format yyyy-mm-dd
attribute Collection_Date_Start long_name String Collection Date Start
attribute Collection_Date_Start nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ (external link)
attribute Collection_Date_Start source_name String Collection_Date_Start
attribute Collection_Date_Start time_precision String 1970-01-01
attribute Collection_Date_Start units String unitless
variable Collection_Date_End String
attribute Collection_Date_End bcodmo_name String date
attribute Collection_Date_End description String Sample collection date (end of date range)  in ISO 8601 format yyyy-mm-dd
attribute Collection_Date_End long_name String Collection Date End
attribute Collection_Date_End nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ (external link)
attribute Collection_Date_End time_precision String 1970-01-01
attribute Collection_Date_End units String unitless
variable Depth_min float
attribute Depth_min _FillValue float NaN
attribute Depth_min actual_range float 16.5, 28.0
attribute Depth_min bcodmo_name String depth
attribute Depth_min colorBarMaximum double 8000.0
attribute Depth_min colorBarMinimum double -8000.0
attribute Depth_min colorBarPalette String TopographyDepth
attribute Depth_min description String Sample collection depth (minimum of depth range)
attribute Depth_min long_name String Depth
attribute Depth_min nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ (external link)
attribute Depth_min standard_name String depth
attribute Depth_min units String meters (m)
variable depth double
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth _FillValue double NaN
attribute depth actual_range double 16.5, 28.0
attribute depth axis String Z
attribute depth bcodmo_name String depth
attribute depth colorBarMaximum double 8000.0
attribute depth colorBarMinimum double -8000.0
attribute depth colorBarPalette String TopographyDepth
attribute depth description String Sample collection depth (maxiumum of depth range)
attribute depth ioos_category String Location
attribute depth long_name String Depth
attribute depth nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/DEPH/ (external link)
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m
variable Bank String
attribute Bank bcodmo_name String site_descrip
attribute Bank description String East or west bank of the Flower Garden Banks
attribute Bank long_name String Bank
attribute Bank units String unitless
variable Species String
attribute Species bcodmo_name String taxon
attribute Species description String Identification (taxonomic name or organism description)
attribute Species long_name String Species
attribute Species units String unitless
variable SRA String
attribute SRA bcodmo_name String accession number
attribute SRA description String Sequence Read Archive (SRA) accession number at NCBI
attribute SRA long_name String SRA
attribute SRA units String unitless
variable Accession String
attribute Accession bcodmo_name String accession number
attribute Accession description String BioSample accession number at NCBI
attribute Accession long_name String Accession
attribute Accession units String unitless
variable latitude double
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 27.8819, 27.9078
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String Sample latitude
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude double
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -93.62829, -93.6002
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String Sample longitude
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude source_name String Long
attribute longitude standard_name String longitude
attribute longitude units String degrees_east

 
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