BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.914459.1
attribute NC_GLOBAL Easternmost_Easting double -149.4838
attribute NC_GLOBAL geospatial_lat_max double 59.8443
attribute NC_GLOBAL geospatial_lat_min double 59.8443
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -149.4838
attribute NC_GLOBAL geospatial_lon_min double -149.4838
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/914459 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information.
attribute NC_GLOBAL Northernmost_Northing double 59.8443
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 59.8443
attribute NC_GLOBAL summary String This experimental dataset includes relative expression of individual Neocalanus flemingeri stage CV individuals incubated for different lengths of time and four different food treatments. The experimental protocol and results are described in detail in Roncalli et al., 2023. Briefly, field-collected N. flemingeri were allowed to molt into stage CV and then sorted into four different treatments: no food, low carbon, high carbon and high carbon with diatoms. After a one-week incubation, individuals from all four treatments were processed individually for RNA-Seq. In addition, following two and three-week incubations, copepods from the three fed treatments were processed individually for RNA-Seq. Short-sequence reads were mapped against a reference transcriptome and normalized gene expression was computed for each transcript. The dataset includes log-transformed relative gene expression in reads per kilobase per million reads (RPKM) (log2[RPKM+1]). The dataset also includes a list of differentially expressed genes and a look-up table that cross-references the hierarchical identifications of transcripts generated by the Trinity assembly software and the corresponding National Center for Biotechnology Information (NCBI) accession number. \n\nThese data are further described in the following publications: Roncalli, et al. (2023) (DOI: 10.1093/plankt/fbad045) and Roncalli, et al. (2019) (DOI: 10.1038/s42003-019-0565-5)
attribute NC_GLOBAL title String [Neocalanus flemingeri incubation experiment:  gene expression] - Gene expression profiles for Neocalanus flemingeri pre adults (CV) exposed to four different experimental food conditions collected from the M/V Dora in the Gulf of Alaska at station GAK1 from April 2019 (Collaborative Research: Molecular profiling of the ecophysiology of dormancy induction in calanid copepods of the Northern Gulf of Alaska LTER site)
attribute NC_GLOBAL Westernmost_Easting double -149.4838
variable seq_id String
attribute seq_id long_name String Seq_id
attribute seq_id units String unitless
variable Genbank_accession String
attribute Genbank_accession long_name String Genbank_accession
attribute Genbank_accession units String unitless
variable Organism_Name String
attribute Organism_Name long_name String Organism_name
attribute Organism_Name units String unitless
variable Station String
attribute Station long_name String Station
attribute Station units String unitless
variable latitude float
attribute latitude _CoordinateAxisType String Lat
attribute latitude actual_range float 59.8443, 59.8443
attribute latitude axis String Y
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude float
attribute longitude _CoordinateAxisType String Lon
attribute longitude actual_range float -149.4838, -149.4838
attribute longitude axis String X
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable Collection_date String
attribute Collection_date long_name String Collection_date
attribute Collection_date units String unitless
variable Year int
attribute Year actual_range int 2019, 2019
attribute Year long_name String Year
attribute Year units String unitless
variable Month int
attribute Month actual_range int 4, 4
attribute Month long_name String Month
attribute Month units String unitless
variable Day int
attribute Day actual_range int 15, 15
attribute Day long_name String Day
attribute Day units String unitless
variable Depth_range String
attribute Depth_range long_name String Depth_range
attribute Depth_range units String meters (m)
variable T0_1 float
attribute T0_1 actual_range float 0.0, 14.11
attribute T0_1 long_name String T0_1
attribute T0_1 units String Log2[RPKM+1]
variable T0_2 float
attribute T0_2 actual_range float 0.0, 14.4
attribute T0_2 long_name String T0_2
attribute T0_2 units String Log2[RPKM+1]
variable T0_3 float
attribute T0_3 actual_range float 0.0, 13.87
attribute T0_3 long_name String T0_3
attribute T0_3 units String Log2[RPKM+1]
variable NF_1 float
attribute NF_1 actual_range float 0.0, 15.2
attribute NF_1 long_name String Nf_1
attribute NF_1 units String Log2[RPKM+1]
variable NF_2 float
attribute NF_2 actual_range float 0.0, 14.48
attribute NF_2 long_name String Nf_2
attribute NF_2 units String Log2[RPKM+1]
variable NF_3 float
attribute NF_3 actual_range float 0.0, 14.25
attribute NF_3 long_name String Nf_3
attribute NF_3 units String Log2[RPKM+1]
variable BW1_1 float
attribute BW1_1 actual_range float 0.0, 14.7
attribute BW1_1 long_name String Bw1_1
attribute BW1_1 units String Log2[RPKM+1]
variable BW1_2 float
attribute BW1_2 actual_range float 0.0, 15.45
attribute BW1_2 long_name String Bw1_2
attribute BW1_2 units String Log2[RPKM+1]
variable BW1_3 float
attribute BW1_3 actual_range float 0.0, 15.63
attribute BW1_3 long_name String Bw1_3
attribute BW1_3 units String Log2[RPKM+1]
variable GW1_1 float
attribute GW1_1 actual_range float 0.0, 15.81
attribute GW1_1 long_name String Gw1_1
attribute GW1_1 units String Log2[RPKM+1]
variable GW1_2 float
attribute GW1_2 actual_range float 0.0, 15.29
attribute GW1_2 long_name String Gw1_2
attribute GW1_2 units String Log2[RPKM+1]
variable GW1_3 float
attribute GW1_3 actual_range float 0.0, 15.14
attribute GW1_3 long_name String Gw1_3
attribute GW1_3 units String Log2[RPKM+1]
variable YW1_1 float
attribute YW1_1 actual_range float 0.0, 15.63
attribute YW1_1 long_name String Yw1_1
attribute YW1_1 units String Log2[RPKM+1]
variable YW1_2 float
attribute YW1_2 actual_range float 0.0, 15.4
attribute YW1_2 long_name String Yw1_2
attribute YW1_2 units String Log2[RPKM+1]
variable YW1_3 float
attribute YW1_3 actual_range float 0.0, 15.54
attribute YW1_3 long_name String Yw1_3
attribute YW1_3 units String Log2[RPKM+1]
variable BW2_1 float
attribute BW2_1 actual_range float 0.0, 15.49
attribute BW2_1 long_name String Bw2_1
attribute BW2_1 units String Log2[RPKM+1]
variable BW2_2 float
attribute BW2_2 actual_range float 0.0, 13.54
attribute BW2_2 long_name String Bw2_2
attribute BW2_2 units String Log2[RPKM+1]
variable BW2_3 float
attribute BW2_3 actual_range float 0.0, 15.51
attribute BW2_3 long_name String Bw2_3
attribute BW2_3 units String Log2[RPKM+1]
variable GW2_1 float
attribute GW2_1 actual_range float 0.0, 14.51
attribute GW2_1 long_name String Gw2_1
attribute GW2_1 units String Log2[RPKM+1]
variable GW2_2 float
attribute GW2_2 actual_range float 0.0, 14.8
attribute GW2_2 long_name String Gw2_2
attribute GW2_2 units String Log2[RPKM+1]
variable GW2_3 float
attribute GW2_3 actual_range float 0.0, 13.47
attribute GW2_3 long_name String Gw2_3
attribute GW2_3 units String Log2[RPKM+1]
variable YW2_1 float
attribute YW2_1 actual_range float 0.0, 14.92
attribute YW2_1 long_name String Yw2_1
attribute YW2_1 units String Log2[RPKM+1]
variable YW2_2 float
attribute YW2_2 actual_range float 0.0, 14.96
attribute YW2_2 long_name String Yw2_2
attribute YW2_2 units String Log2[RPKM+1]
variable YW2_3 float
attribute YW2_3 actual_range float 0.0, 14.91
attribute YW2_3 long_name String Yw2_3
attribute YW2_3 units String Log2[RPKM+1]
variable BW3_1 float
attribute BW3_1 actual_range float 0.0, 15.72
attribute BW3_1 long_name String Bw3_1
attribute BW3_1 units String Log2[RPKM+1]
variable BW3_2 float
attribute BW3_2 actual_range float 0.0, 15.51
attribute BW3_2 long_name String Bw3_2
attribute BW3_2 units String Log2[RPKM+1]
variable BW3_3 float
attribute BW3_3 actual_range float 0.0, 15.04
attribute BW3_3 long_name String Bw3_3
attribute BW3_3 units String Log2[RPKM+1]
variable GW3_1 float
attribute GW3_1 actual_range float 0.0, 15.39
attribute GW3_1 long_name String Gw3_1
attribute GW3_1 units String Log2[RPKM+1]
variable GW3_2 float
attribute GW3_2 actual_range float 0.0, 14.89
attribute GW3_2 long_name String Gw3_2
attribute GW3_2 units String Log2[RPKM+1]
variable GW3_3 float
attribute GW3_3 actual_range float 0.0, 14.67
attribute GW3_3 long_name String Gw3_3
attribute GW3_3 units String Log2[RPKM+1]
variable YW3_1 float
attribute YW3_1 actual_range float 0.0, 14.28
attribute YW3_1 long_name String Yw3_1
attribute YW3_1 units String Log2[RPKM+1]
variable YW3_2 float
attribute YW3_2 actual_range float 0.0, 15.01
attribute YW3_2 long_name String Yw3_2
attribute YW3_2 units String Log2[RPKM+1]
variable YW3_3 float
attribute YW3_3 actual_range float 0.0, 15.39
attribute YW3_3 long_name String Yw3_3
attribute YW3_3 units String Log2[RPKM+1]

 
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