BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.916134.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/916134 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information.
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL summary String This dataset includes metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002. These model marine bacteria were grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates. The data are sampled so as to capture the metabolic differences the bacteria employ when catabolizing these different substrates and when switching between them. The raw RNA sequences (50 bp reads in fastq format) have been submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject PRJNA972985 (https://www.ncbi.nlm.nih.gov/bioproject/972985).
attribute NC_GLOBAL title String [Substrate-specific metabolic responses of model marine bacteria] - Metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002 grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates (C-CoMP Model Bacteria Physiological Studies)
variable Sample_Name String
attribute Sample_Name long_name String Sample_name
attribute Sample_Name units String unitless
variable Accession String
attribute Accession long_name String Accession
attribute Accession units String unitless
variable BioProject String
attribute BioProject long_name String Bioproject
attribute BioProject units String unitless
variable Organism String
attribute Organism long_name String Organism
attribute Organism units String unitless
variable Strain String
attribute Strain long_name String Strain
attribute Strain units String unitless
variable Tax_ID int
attribute Tax_ID actual_range int 28108, 89184
attribute Tax_ID long_name String Tax_id
attribute Tax_ID units String unitless
variable Glucose_initial_concentration_uM float
attribute Glucose_initial_concentration_uM actual_range float 0.0, 2.0
attribute Glucose_initial_concentration_uM long_name String Glucose_initial_concentration_um
attribute Glucose_initial_concentration_uM units String micromolar concentration
variable Acetate_initial_concentration_uM int
attribute Acetate_initial_concentration_uM actual_range int 0, 6
attribute Acetate_initial_concentration_uM long_name String Acetate_initial_concentration_um
attribute Acetate_initial_concentration_uM units String micromolar concentration
variable Sample_description String
attribute Sample_description long_name String Sample_description
attribute Sample_description units String unitless

 
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