BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.922006.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/922006 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information.
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL summary String Genomic data was collected from 96 Acropora cervicornis samples, 48 of which were collected from the Coral restoration foundation nursery in Florida in June 2021 and the other 48 were collected from Bocas del Toro Panama in November 2021. All samples were sequenced using illumina short read sequencing to create whole genome sequencing profiles of the DNA with one of the Florida samples, the K2 genotype, being sequenced using additional Nanopore long reads to assemble and annotate an A. cervicornis genome. All genotypes were used in a disease exposure assay to assess individual genotype disease resistance with a further, 16 colonies from Florida being sequenced at two timepoints across disease exposed and healthy colonies (total 48 sequences) using RNAseq to identify patterns in differential gene expression based on disease resistance.\n\nThis dataset includes sample metadata, treatment information, and disease state for corals in the exposure experiment. Sample metadata and accession identifiers for sequences at The National Center for Biotechnology Information (NCBI) are included as a supplemental file.
attribute NC_GLOBAL title String [Acropora cervicornis white band exposure experiment survival outcomes] - Acropora cervicornis genomic/trancriptomic sequence accessions with associated data on tank exposure to white band disease and survival outcomes with corals collected from Florida, USA and Bocas del Toro, Panama in 2021 (Multi-omic bases of coral disease resistance)
variable Tank String
attribute Tank long_name String Tank
attribute Tank units String untiless
variable Treatment String
attribute Treatment long_name String Treatment
attribute Treatment units String untiless
variable Location String
attribute Location long_name String Location
attribute Location units String untiless
variable Genotype String
attribute Genotype long_name String Genotype
attribute Genotype units String untiless
variable Day_1_AM int
attribute Day_1_AM actual_range int 0, 1
attribute Day_1_AM long_name String Day_1_am
attribute Day_1_AM units String untiless
variable Day_1_PM int
attribute Day_1_PM actual_range int 0, 1
attribute Day_1_PM long_name String Day_1_pm
attribute Day_1_PM units String untiless
variable Day_2_AM int
attribute Day_2_AM actual_range int 0, 1
attribute Day_2_AM long_name String Day_2_am
attribute Day_2_AM units String untiless
variable Day_2_PM int
attribute Day_2_PM actual_range int 0, 1
attribute Day_2_PM long_name String Day_2_pm
attribute Day_2_PM units String untiless
variable Day_3_AM int
attribute Day_3_AM actual_range int 0, 1
attribute Day_3_AM long_name String Day_3_am
attribute Day_3_AM units String untiless
variable Day_3_PM int
attribute Day_3_PM actual_range int 0, 1
attribute Day_3_PM long_name String Day_3_pm
attribute Day_3_PM units String untiless
variable Day_4_AM int
attribute Day_4_AM actual_range int 0, 1
attribute Day_4_AM long_name String Day_4_am
attribute Day_4_AM units String untiless
variable Day_4_PM int
attribute Day_4_PM actual_range int 0, 1
attribute Day_4_PM long_name String Day_4_pm
attribute Day_4_PM units String untiless
variable Day_5_AM int
attribute Day_5_AM actual_range int 0, 1
attribute Day_5_AM long_name String Day_5_am
attribute Day_5_AM units String untiless
variable Day_5_PM int
attribute Day_5_PM actual_range int 0, 1
attribute Day_5_PM long_name String Day_5_pm
attribute Day_5_PM units String untiless
variable Day_6_AM int
attribute Day_6_AM actual_range int 0, 1
attribute Day_6_AM long_name String Day_6_am
attribute Day_6_AM units String untiless
variable Day_6_PM int
attribute Day_6_PM actual_range int 0, 1
attribute Day_6_PM long_name String Day_6_pm
attribute Day_6_PM units String untiless
variable Day_7_AM int
attribute Day_7_AM actual_range int 0, 1
attribute Day_7_AM long_name String Day_7_am
attribute Day_7_AM units String untiless

 
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