Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Row Type | Variable Name | Attribute Name | Data Type | Value |
|---|---|---|---|---|
| attribute | NC_GLOBAL | cdm_data_type | String | Other |
| attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
| attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
| attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
| attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/
|
| attribute | NC_GLOBAL | doi | String | 10.26008/1912/bco-dmo.924786.1 |
| attribute | NC_GLOBAL | Easternmost_Easting | double | -122.8464 |
| attribute | NC_GLOBAL | geospatial_lat_max | double | 38.33343 |
| attribute | NC_GLOBAL | geospatial_lat_min | double | 38.10505 |
| attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
| attribute | NC_GLOBAL | geospatial_lon_max | double | -122.8464 |
| attribute | NC_GLOBAL | geospatial_lon_min | double | -123.0595 |
| attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
| attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/924786
|
| attribute | NC_GLOBAL | institution | String | BCO-DMO |
| attribute | NC_GLOBAL | license | String | The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information. |
| attribute | NC_GLOBAL | Northernmost_Northing | double | 38.33343 |
| attribute | NC_GLOBAL | sourceUrl | String | (local files) |
| attribute | NC_GLOBAL | Southernmost_Northing | double | 38.10505 |
| attribute | NC_GLOBAL | summary | String | This dataset includes sample collection information and sequence accessions at the National Center for Biotechnology Information (NCBI) for whole genome sequencing of eelgrass (Zostera marina) collected at Bodega and Tomales Bay, California, USA from July and September of 2019. Sequence Read Archive (SRA) Experiments and BioSamples can be accessed from the NCBI BioProject PRJNA887384 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA887384/).\n\nResults summary as described in Scheibelhut, et al. (2023): We examine genomic signals of selection in the eelgrass Zostera marina across temperature gradients in adjacent embayments. Although we find many genomic regions with signals of selection within each bay there is very little overlap in signals of selection at the SNP level, despite most polymorphisms being shared across bays. We do find overlap at the gene level, potentially suggesting multiple mutational pathways to the same phenotype. Using polygenic models we find that some sets of candidate SNPs are able to predict temperature across both bays, suggesting that small but parallel shifts in allele frequencies may be missed by independent genome scans. Together, these results highlight the continuous rather than binary nature of parallel evolution in polygenic traits and the complexity of evolutionary predictability. |
| attribute | NC_GLOBAL | title | String | [Whole Genome Sequencing of Eelgrass Bodega and Tomales Bay] - Sample collection information and sequence accessions at the National Center for Biotechnology Information (NCBI) for whole genome sequencing of eelgrass (Zostera marina) collected at Bodega and Tomales Bay, CA, USA from July to September 2019 (Using genomics to link traits to ecosystem function in the eelgrass Zostera marina) |
| attribute | NC_GLOBAL | Westernmost_Easting | double | -123.0595 |
| variable | accession | String | ||
| attribute | accession | long_name | String | Accession |
| attribute | accession | units | String | unitless |
| variable | sample_name | String | ||
| attribute | sample_name | long_name | String | Sample_name |
| attribute | sample_name | units | String | unitless |
| variable | bioproject_accession | String | ||
| attribute | bioproject_accession | long_name | String | Bioproject_accession |
| attribute | bioproject_accession | units | String | unitless |
| variable | Site | String | ||
| attribute | Site | long_name | String | Site |
| attribute | Site | units | String | unitless |
| variable | organism | String | ||
| attribute | organism | long_name | String | Organism |
| attribute | organism | units | String | unitless |
| variable | collection_date | String | ||
| attribute | collection_date | long_name | String | Collection_date |
| attribute | collection_date | units | String | unitless |
| variable | isolation_source | String | ||
| attribute | isolation_source | long_name | String | Isolation_source |
| attribute | isolation_source | units | String | unitless |
| variable | latitude | float | ||
| attribute | latitude | _CoordinateAxisType | String | Lat |
| attribute | latitude | actual_range | float | 38.10505, 38.33343 |
| attribute | latitude | axis | String | Y |
| attribute | latitude | ioos_category | String | Location |
| attribute | latitude | long_name | String | Latitude |
| attribute | latitude | standard_name | String | latitude |
| attribute | latitude | units | String | degrees_north |
| variable | longitude | float | ||
| attribute | longitude | _CoordinateAxisType | String | Lon |
| attribute | longitude | actual_range | float | -123.0595, -122.8464 |
| attribute | longitude | axis | String | X |
| attribute | longitude | ioos_category | String | Location |
| attribute | longitude | long_name | String | Longitude |
| attribute | longitude | standard_name | String | longitude |
| attribute | longitude | units | String | degrees_east |