Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Row Type | Variable Name | Attribute Name | Data Type | Value |
|---|---|---|---|---|
| attribute | NC_GLOBAL | cdm_data_type | String | Other |
| attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
| attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
| attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
| attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/
|
| attribute | NC_GLOBAL | doi | String | 10.26008/1912/bco-dmo.927507.1 |
| attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/927507
|
| attribute | NC_GLOBAL | institution | String | BCO-DMO |
| attribute | NC_GLOBAL | license | String | The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information. |
| attribute | NC_GLOBAL | sourceUrl | String | (local files) |
| attribute | NC_GLOBAL | summary | String | This dataset includes normalized protein abundance data and protein annotations for proteomic data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002. These model marine bacteria were grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates. The data are sampled so as to capture the metabolic differences the bacteria employ when catabolizing these different substrates and when switching between them. The raw proteomics files are available on the Proteomics IDEntification Database (PRIDE) under accession PXD045824. The proteomic data accompanies the transcriptomic expression data available at BCO-DMO dataset 916134 (https://www.bco-dmo.org/dataset/916134). |
| attribute | NC_GLOBAL | title | String | [Substrate-specific metabolic responses of model marine bacteria using proteomics] - Normalized protein abundance data and protein annotations for proteomic data from laboratory cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002 in 2022 (C-CoMP Model Bacteria Physiological Studies) |
| variable | Species | String | ||
| attribute | Species | long_name | String | Species |
| attribute | Species | units | String | unitless |
| variable | Strain | String | ||
| attribute | Strain | long_name | String | Strain |
| attribute | Strain | units | String | unitless |
| variable | gene_callers_id | String | ||
| attribute | gene_callers_id | long_name | String | Gene_callers_id |
| attribute | gene_callers_id | units | String | unitless |
| variable | ac_mean_abund | float | ||
| attribute | ac_mean_abund | actual_range | float | 3.38373E-7, 0.7058473 |
| attribute | ac_mean_abund | long_name | String | Ac_mean_abund |
| attribute | ac_mean_abund | units | String | unitless |
| variable | glc_mean_abund | float | ||
| attribute | glc_mean_abund | actual_range | float | 0.0, 0.5589228 |
| attribute | glc_mean_abund | long_name | String | Glc_mean_abund |
| attribute | glc_mean_abund | units | String | unitless |
| variable | late_mean_abund | float | ||
| attribute | late_mean_abund | actual_range | float | 6.04823E-7, 0.6974525 |
| attribute | late_mean_abund | long_name | String | Late_mean_abund |
| attribute | late_mean_abund | units | String | unitless |
| variable | early_mean_abund | float | ||
| attribute | early_mean_abund | actual_range | float | 6.78585E-8, 1.231981 |
| attribute | early_mean_abund | long_name | String | Early_mean_abund |
| attribute | early_mean_abund | units | String | unitless |
| variable | SPO_ID_ACCESSION | String | ||
| attribute | SPO_ID_ACCESSION | long_name | String | Spo_id_accession |
| attribute | SPO_ID_ACCESSION | units | String | unitless |
| variable | KOfam_ACCESSION | String | ||
| attribute | KOfam_ACCESSION | long_name | String | Kofam_accession |
| attribute | KOfam_ACCESSION | units | String | unitless |
| variable | KEGG_Module | String | ||
| attribute | KEGG_Module | long_name | String | Kegg_module |
| attribute | KEGG_Module | units | String | unitless |
| variable | COG20_FUNCTION | String | ||
| attribute | COG20_FUNCTION | long_name | String | Cog20_function |
| attribute | COG20_FUNCTION | units | String | unitless |
| variable | Uniprot_accession | String | ||
| attribute | Uniprot_accession | long_name | String | Uniprot_accession |
| attribute | Uniprot_accession | units | String | unitless |