BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.928039.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/928039 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information.
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL summary String Marine biogeochemical cycles are built on interactions between surface ocean microbes, particularly those connecting phytoplankton primary producers to heterotrophic bacteria. However, direct influences of bacteria on phytoplankton physiology are poorly known. In this study, three marine bacteria (Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152) were co-cultured with green alga Micromonas commoda, and the phytoplankter's transcriptome was studied by RNASeq. The presence of each bacterium invoked transcriptomic remodeling by M. commoda after 8 h in co-culture. Some aspects of the algal transcriptomic response were conserved across all three bacteria, while others were restricted to a single bacterium. M. commoda had both rapid and extensive responses to heterotrophic bacteria.
attribute NC_GLOBAL title String [Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux)
variable Bottle_ID int
attribute Bottle_ID actual_range int 1, 40
attribute Bottle_ID long_name String Bottle_id
attribute Bottle_ID units String unitless
variable Treatment String
attribute Treatment long_name String Treatment
attribute Treatment units String unitless
variable Time_h int
attribute Time_h actual_range int 0, 56
attribute Time_h long_name String Time_h
attribute Time_h units String hour (h)
variable Micromonas_cells_ml int
attribute Micromonas_cells_ml actual_range int 267000, 18512000
attribute Micromonas_cells_ml long_name String Micromonas_cells_ml
attribute Micromonas_cells_ml units String cells per milliliter (cell/ml)
variable Bacteria_cells_ml int
attribute Bacteria_cells_ml actual_range int 436800, 2676232
attribute Bacteria_cells_ml long_name String Bacteria_cells_ml
attribute Bacteria_cells_ml units String cells per milliliter (cell/ml)
variable NH4_uM float
attribute NH4_uM actual_range float 1.61, 4.45
attribute NH4_uM long_name String Nh4_um
attribute NH4_uM units String micromolar (uM)
variable NO3_uM float
attribute NO3_uM actual_range float 601.3, 1061.6
attribute NO3_uM long_name String No3_um
attribute NO3_uM units String micromolar (uM)
variable PO4_uM float
attribute PO4_uM actual_range float 0.62, 42.31
attribute PO4_uM long_name String Po4_um
attribute PO4_uM units String micromolar (uM)
variable NCBI_Sample_ID int
attribute NCBI_Sample_ID actual_range int 1, 16
attribute NCBI_Sample_ID long_name String Ncbi_sample_id
attribute NCBI_Sample_ID units String unitless
variable Accession String
attribute Accession long_name String Accession
attribute Accession units String unitless
variable BioProject String
attribute BioProject long_name String Bioproject
attribute BioProject units String unitless
variable Organism String
attribute Organism long_name String Organism
attribute Organism units String unitless
variable Taxonomy_ID String
attribute Taxonomy_ID long_name String Taxonomy_id
attribute Taxonomy_ID units String unitless
variable Description String
attribute Description long_name String Description
attribute Description units String unitless

 
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