BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.934800.1
attribute NC_GLOBAL Easternmost_Easting double -123.0515
attribute NC_GLOBAL geospatial_lat_max double 38.30538
attribute NC_GLOBAL geospatial_lat_min double 38.30538
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -123.0515
attribute NC_GLOBAL geospatial_lon_min double -123.0515
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/934800 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information.
attribute NC_GLOBAL Northernmost_Northing double 38.30538
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 38.30538
attribute NC_GLOBAL summary String Outbreaks of sea star wasting (SSW) have killed millions of sea stars across over 20 taxa in the last decade alone, threatening the health and stability of coastal communities around the world. While the causative agent remains unknown, it has recently been postulated that hypoxia exposure may play a dominant role in the onset of SSW. We leveraged a study that subjected ochre sea stars to organic matter amendment in a controlled laboratory setting to induce hypoxia and used a repeated sampling design to collect non-invasive tissue samples from both healthy and wasting individuals. Following tag-based RNAseq (TagSeq), we analyzed differential gene expression (DGE) patterns among and within these individuals sampled strategically throughout the 15-day experiment. Transcriptional profiles reveal a progressive change in gene expression accompanying the advancement of SSW, reflecting a transition from asymptomatic stars to the onset of characteristic SSW lesions that progressively worsen until, in some cases, the star dies of their symptoms. Included in this dataset is the accession information for 89 individual TagSeq samples across 20 individual Pisaster ochraceus sea stars at multiple time points during the study to make them available for subsequent re-evaluation. The sequence data have been deposited into the NCBI archive under BioProject PRJNA1116313 and will be publicly available on 2025-08-01.
attribute NC_GLOBAL title String [Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus] - Bioproject accession information on tag-sequence data for Pisaster ochraceus samples collected from Bodega Bay, CA, in July 2019 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath)
attribute NC_GLOBAL Westernmost_Easting double -123.0515
variable sample_name String
attribute sample_name long_name String Sample_name
attribute sample_name units String unitless
variable bioproject_accession String
attribute bioproject_accession long_name String Bioproject_accession
attribute bioproject_accession units String unitless
variable bioproject_ncbi String
attribute bioproject_ncbi long_name String Bioproject_ncbi
attribute bioproject_ncbi units String unitless
variable assay_type String
attribute assay_type long_name String Assay_type
attribute assay_type units String unitless
variable organism String
attribute organism long_name String Organism
attribute organism units String unitless
variable isolate_id String
attribute isolate_id long_name String Isolate_id
attribute isolate_id units String unitless
variable isolation_source String
attribute isolation_source long_name String Isolation_source
attribute isolation_source units String unitless
variable collection_date String
attribute collection_date long_name String Collection_date
attribute collection_date units String unitless
variable geo_loc_name String
attribute geo_loc_name long_name String Geo_loc_name
attribute geo_loc_name units String unitless
variable latitude float
attribute latitude _CoordinateAxisType String Lat
attribute latitude actual_range float 38.30538, 38.30538
attribute latitude axis String Y
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude float
attribute longitude _CoordinateAxisType String Lon
attribute longitude actual_range float -123.0515, -123.0515
attribute longitude axis String X
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable tissue String
attribute tissue long_name String Tissue
attribute tissue units String unitless
variable biomaterial_provider String
attribute biomaterial_provider long_name String Biomaterial_provider
attribute biomaterial_provider units String unitless
variable collected_by String
attribute collected_by long_name String Collected_by
attribute collected_by units String unitless
variable host_tissue_sampled String
attribute host_tissue_sampled long_name String Host_tissue_sampled
attribute host_tissue_sampled units String unitless

 
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