Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Row Type | Variable Name | Attribute Name | Data Type | Value |
|---|---|---|---|---|
| attribute | NC_GLOBAL | cdm_data_type | String | Other |
| attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
| attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
| attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
| attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/
|
| attribute | NC_GLOBAL | doi | String | 10.26008/1912/bco-dmo.997637.1 |
| attribute | NC_GLOBAL | infoUrl | String | https://osprey.bco-dmo.org/dataset/997637
|
| attribute | NC_GLOBAL | institution | String | BCO-DMO |
| attribute | NC_GLOBAL | license | String | The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information. |
| attribute | NC_GLOBAL | sourceUrl | String | (local files) |
| attribute | NC_GLOBAL | summary | String | To examine how marine bacteria utilize extracellular vesicles as a nutrient source, we compared the transcriptomic response of Alteromonas macleodii MIT1002 cells grown on purified extracellular vesicles (purified from Alteromonas MIT1002 or Prochlorococcus MIT9312) as compared to glucose or a no-carbon control. Our study provides insights into the cellular mechanisms through which these cells may take up extracellular vesicle material and the specific types of molecules within vesicles that can be utilized for carbon and/or energy. \n\nThis dataset contains accession metadata for sequences run from cultures of Alteromonas macleodii MIT1002. Data were collected by Dr. Ashley Stein and Dr. Steven Biller, Wellesley College. The raw RNAseq reads have been deposited in the National Center for Biotechnology Information (NCBI) GEO database under accession GSE314643. |
| attribute | NC_GLOBAL | title | String | [Alteromonas MIT1002 EV Transcriptome] - NCBI accession metadata for transcriptomic expression sequences from cultures of Alteromonas macleodii MIT1002 grown with bacterial extracellular vesicles as a carbon source (Collaborative Research: Quantifying the role of microbial extracellular vesicles in marine dissolved organic matter production and consumption) |
| variable | Biosample_ID | String | ||
| attribute | Biosample_ID | long_name | String | Biosample_id |
| attribute | Biosample_ID | units | String | unitless |
| variable | SRA_Experiment_ID | String | ||
| attribute | SRA_Experiment_ID | long_name | String | Sra_experiment_id |
| attribute | SRA_Experiment_ID | units | String | unitless |
| variable | GEO_Sample_ID | String | ||
| attribute | GEO_Sample_ID | long_name | String | Geo_sample_id |
| attribute | GEO_Sample_ID | units | String | unitless |
| variable | Bacterium | String | ||
| attribute | Bacterium | long_name | String | Bacterium |
| attribute | Bacterium | units | String | unitless |
| variable | Carbon_Substrate | String | ||
| attribute | Carbon_Substrate | long_name | String | Carbon_substrate |
| attribute | Carbon_Substrate | units | String | unitless |
| variable | Timepoint | String | ||
| attribute | Timepoint | long_name | String | Timepoint |
| attribute | Timepoint | units | String | unitless |
| variable | Replicate | int | ||
| attribute | Replicate | actual_range | int | 1, 3 |
| attribute | Replicate | long_name | String | Replicate |
| attribute | Replicate | units | String | unitless |