BCO-DMO ERDDAP
Accessing BCO-DMO data 		log in    
Brought to you by BCO-DMO    
 
 
Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.997771.1
attribute NC_GLOBAL Easternmost_Easting double -64.89533
attribute NC_GLOBAL geospatial_lat_max double 24.7329
attribute NC_GLOBAL geospatial_lat_min double 18.27925
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -64.89533
attribute NC_GLOBAL geospatial_lon_min double -81.4095
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://osprey.bco-dmo.org/dataset/997771 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information.
attribute NC_GLOBAL Northernmost_Northing double 24.7329
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 18.27925
attribute NC_GLOBAL summary String These data include NCBI Sequence Read Archive (SRA) accession numbers for raw fastq files of internal transcribed spacer-2 (ITS-2) amplicons from 491 apparently healthy and stony coral tissue loss disease (SCTLD)-affected corals in Florida, U.S.A., and the United States Virgin Islands (USVI), representing nine coral species sampled in situ or during an SCTLD transmission experiment. From Florida, 215 samples were collected in situ from six epidemic sites in 2018. From the USVI, 110 samples were collected in situ from four reef sites in 2019-2020. Of the total samples, 325 were sampled in situ as sets of SCTLD-affected and apparently healthy conspecifics: two samples were collected from each diseased coral, one from tissue adjacent to the gross tissue loss lesion and one from apparently healthy tissue on the same coral; one sample was then collected from a nearby conspecific coral that was apparently healthy. The 166 remaining samples were originally collected from Rupert's Rock in the USVI, and samples were taken from these corals during a wet lab-based SCTLD transmission experiment. Understanding whether Symbiodiniaceae composition is predictive of disease state is crucial for managing SCTLD outbreaks, and these data permit investigations of how Symbiodiniaceae lineage-level dynamics may underlie variation in holobiont disease response. Florida samples were collected by Kerry Maxwell, Lindsay Huebner, Dr. Erinn M. Muller, and their teams at the Florida Fish & Wildlife Research Institute and Mote Marine Laboratory. USVI samples were collected by Dr. Marilyn Brandt, Sonora Meiling, Dr. Alex Veglia, Dr. Daniel Holstein, Dr. Laura Mydlarz, Dr. Amy Apprill, Dr. Adrienne Correa, and their teams. Danielle Lasseigne, Adam Glahn, Amanda Long, Bradley Arrington, Daniel Mele, Kathryn Cobleigh, Alexandra Gutting, Joseph Townsend, Naomi Huntley, Kelsey Beavers, Paul Barbera, Nate Berkebile, Tiffany Boisvert, Michael Bollinger, Katy Cummings, Amanda Ellis, Kristine Fisher, John Hart, Lauri Maclaughlin, Brian Reckenbeil, and Jennifer Stein assisted with field collections.
attribute NC_GLOBAL title String [SCTLD-associated Symbiodiniaceae ITS-2] - NCBI Sequence Read Archive (SRA) accession numbers for raw fastq sequence files of ITS-2 amplicons collected from healthy and SCTLD-affected tissues of nine coral species in Florida, U.S.A. and the U.S. Virgin Islands from 2018-2020 (A multi-scale approach to predicting infectious multi-host disease spread in marine benthic communities)
attribute NC_GLOBAL Westernmost_Easting double -81.4095
variable sample String
attribute sample long_name String Sample
attribute sample units String unitless
variable coral_id String
attribute coral_id long_name String Coral_id
attribute coral_id units String unitless
variable sample_id String
attribute sample_id long_name String Sample_id
attribute sample_id units String unitless
variable health String
attribute health long_name String Health
attribute health units String unitless
variable host_phylum String
attribute host_phylum long_name String Host_phylum
attribute host_phylum units String unitless
variable host_class String
attribute host_class long_name String Host_class
attribute host_class units String unitless
variable host_order String
attribute host_order long_name String Host_order
attribute host_order units String unitless
variable host_family String
attribute host_family long_name String Host_family
attribute host_family units String unitless
variable host_genus String
attribute host_genus long_name String Host_genus
attribute host_genus units String unitless
variable host_species String
attribute host_species long_name String Host_species
attribute host_species units String unitless
variable susceptibility String
attribute susceptibility long_name String Susceptibility
attribute susceptibility units String unitless
variable location String
attribute location long_name String Location
attribute location units String unitless
variable sampletype String
attribute sampletype long_name String Sampletype
attribute sampletype units String unitless
variable site String
attribute site long_name String Site
attribute site units String unitless
variable latitude float
attribute latitude _CoordinateAxisType String Lat
attribute latitude actual_range float 18.27925, 24.7329
attribute latitude axis String Y
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude float
attribute longitude _CoordinateAxisType String Lon
attribute longitude actual_range float -81.4095, -64.89533
attribute longitude axis String X
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable year String
attribute year long_name String Year
attribute year units String unitless
variable col_health String
attribute col_health long_name String Col_health
attribute col_health units String unitless
variable figure_sample_id String
attribute figure_sample_id long_name String Figure_sample_id
attribute figure_sample_id units String unitless
variable figure_coral_id String
attribute figure_coral_id long_name String Figure_coral_id
attribute figure_coral_id units String unitless
variable ncbi_bioproject String
attribute ncbi_bioproject long_name String Ncbi_bioproject
attribute ncbi_bioproject units String unitless
variable ncbi_biosample String
attribute ncbi_biosample long_name String Ncbi_biosample
attribute ncbi_biosample units String unitless
variable AphiaID int
attribute AphiaID actual_range int 207516, 758261
attribute AphiaID long_name String Aphiaid
attribute AphiaID units String unitless

 
ERDDAP, Version 2.22
Disclaimers | Privacy Policy | Contact