BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.998957.1
attribute NC_GLOBAL Easternmost_Easting double -88.4893
attribute NC_GLOBAL geospatial_lat_max double 28.8505
attribute NC_GLOBAL geospatial_lat_min double 26.095
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -88.4893
attribute NC_GLOBAL geospatial_lon_min double -92.701
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL geospatial_vertical_max double 2107.0
attribute NC_GLOBAL geospatial_vertical_min double 3.0
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://osprey.bco-dmo.org/dataset/998957 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information.
attribute NC_GLOBAL Northernmost_Northing double 28.8505
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 26.095
attribute NC_GLOBAL summary String This dataset includes sample information for the metagenomes from the Gulf of Mexico used in the Conrad et al. AEM 2026 study. Water samples were collected during CTD casts from the May 2012 R/V Endeavour cruise EN509 and shotgun metagenomes were sequenced from the surface (~3 meters (m)), the mixed layer (ML; 15-25m), the deep chlorophyll maximum (DCM; 70-90m), below the DCM but above the oxygen minimum zone (OMZ; 100-150m), and the OMZ (200-400m) from three stations in the northwest Gulf of Mexico on an Illumina MiSeq sequencer available at the Molecular Core of Georgia Tech. Raw sequences are available in the National Center for Biotechnology Information (NCBI) under BioProject number PRJNA291283.
attribute NC_GLOBAL title String [Metagenome from Gulf of Mexico] - Sample information for the metagenomes from the Gulf of Mexico collected on R/V Endeavor cruise EN509 in May 2012 (Collaborative Research: Microdiversity drives ecosystem function: SAR11 bacteria as models for oceanic nitrogen loss)
attribute NC_GLOBAL Westernmost_Easting double -92.701
variable Acession String
attribute Acession long_name String Acession
attribute Acession units String unitless
variable Sample_Name String
attribute Sample_Name long_name String Sample_name
attribute Sample_Name units String unitless
variable Vessel String
attribute Vessel long_name String Vessel
attribute Vessel units String unitless
variable Cruise String
attribute Cruise long_name String Cruise
attribute Cruise units String unitless
variable Ocean String
attribute Ocean long_name String Ocean
attribute Ocean units String unitless
variable Date String
attribute Date long_name String Date
attribute Date units String unitless
variable Year int
attribute Year actual_range int 2012, 2012
attribute Year long_name String Year
attribute Year units String unitless
variable Month String
attribute Month long_name String Month
attribute Month units String unitless
variable Day int
attribute Day actual_range int 2, 30
attribute Day long_name String Day
attribute Day units String unitless
variable Station int
attribute Station actual_range int 2, 8
attribute Station long_name String Station
attribute Station units String unitless
variable latitude float
attribute latitude _CoordinateAxisType String Lat
attribute latitude actual_range float 26.095, 28.8505
attribute latitude axis String Y
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude float
attribute longitude _CoordinateAxisType String Lon
attribute longitude actual_range float -92.701, -88.4893
attribute longitude axis String X
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable Description String
attribute Description long_name String Description
attribute Description units String unitless
variable depth int
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth actual_range int 3, 2107
attribute depth axis String Z
attribute depth ioos_category String Location
attribute depth long_name String Depth
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m
variable Temp float
attribute Temp actual_range float 4.2532, 27.8465
attribute Temp long_name String Temp
attribute Temp units String degrees Celsius
variable Salinity float
attribute Salinity actual_range float 29.6411, 36.5015
attribute Salinity long_name String Salinity
attribute Salinity units String PSU
variable Density float
attribute Density actual_range float 18.4198, 27.7314
attribute Density long_name String Density
attribute Density units String sigma theta
variable Fluoresence float
attribute Fluoresence actual_range float 0.0461, 0.9041
attribute Fluoresence long_name String Fluoresence
attribute Fluoresence units String milligrams per cubic meter (mg/m^3)
variable Oxygen float
attribute Oxygen actual_range float 109.172, 212.9035
attribute Oxygen long_name String Oxygen
attribute Oxygen units String micromolar (uM)
variable Xmiss float
attribute Xmiss actual_range float 80.643, 89.137
attribute Xmiss long_name String Xmiss
attribute Xmiss units String ranging 0-100%.
variable Conductivity float
attribute Conductivity actual_range float 3.342063, 5.707192
attribute Conductivity long_name String Conductivity
attribute Conductivity units String Siemens per meter (S/m)
variable Par float
attribute Par actual_range float 0.633, 2060.0
attribute Par long_name String Par
attribute Par units String micromoles of photons per square meter per second (μmol*m^-2*s^-1)
variable Mean_PO4 float
attribute Mean_PO4 actual_range float 0.064, 2.112
attribute Mean_PO4 long_name String Mean_po4
attribute Mean_PO4 units String micromolar (uM)
variable Mean_Si float
attribute Mean_Si actual_range float 0.816, 27.173
attribute Mean_Si long_name String Mean_si
attribute Mean_Si units String micromolar (uM)
variable Mean_NO3_NO2 float
attribute Mean_NO3_NO2 actual_range float 0.0, 34.94
attribute Mean_NO3_NO2 long_name String Mean_no3_no2
attribute Mean_NO3_NO2 units String micromolar (uM)
variable Sequencing_Effort_Gb float
attribute Sequencing_Effort_Gb actual_range float 2.91, 17.61
attribute Sequencing_Effort_Gb long_name String Sequencing_effort_gb
attribute Sequencing_Effort_Gb units String Giga-basepairs (Gb)
variable Sequencing_Effort_Bp int
attribute Sequencing_Effort_Bp long_name String Sequencing_effort_bp
attribute Sequencing_Effort_Bp units String Basepairs (Bp)
variable Metagenome_Reads_GC float
attribute Metagenome_Reads_GC actual_range float 35.43749, 49.59689
attribute Metagenome_Reads_GC long_name String Metagenome_reads_gc
attribute Metagenome_Reads_GC units String ranging 25-75%, typically
variable Average_Genome_Size float
attribute Average_Genome_Size actual_range float 1806225.0, 3157446.0
attribute Average_Genome_Size long_name String Average_genome_size
attribute Average_Genome_Size units String Mega-basepairs (Mb)
variable Nonpareil_Diversity float
attribute Nonpareil_Diversity actual_range float 19.61215, 21.2032
attribute Nonpareil_Diversity long_name String Nonpareil_diversity
attribute Nonpareil_Diversity units String ranging 1-30, typically
variable Diversity_Covered float
attribute Diversity_Covered actual_range float 46.62, 76.96
attribute Diversity_Covered long_name String Diversity_covered
attribute Diversity_Covered units String ranging 0-100%.
variable Contigs_Assembled int
attribute Contigs_Assembled actual_range int 21266, 209000
attribute Contigs_Assembled long_name String Contigs_assembled
attribute Contigs_Assembled units String integer, number
variable Assembled_Length int
attribute Assembled_Length actual_range int 40718750, 520984574
attribute Assembled_Length long_name String Assembled_length
attribute Assembled_Length units String Basepairs (Bp)
variable Assembled_N50 int
attribute Assembled_N50 actual_range int 1850, 3235
attribute Assembled_N50 long_name String Assembled_n50
attribute Assembled_N50 units String Basepairs (Bp)
variable Assembled_GC float
attribute Assembled_GC actual_range float 36.44104, 49.66048
attribute Assembled_GC long_name String Assembled_gc
attribute Assembled_GC units String ranging 25-75%, typically
variable Predicted_CDS int
attribute Predicted_CDS actual_range int 52799, 657518
attribute Predicted_CDS long_name String Predicted_cds
attribute Predicted_CDS units String integer, number
variable Reads_Mapping_to_Assembly float
attribute Reads_Mapping_to_Assembly actual_range float 22.49, 63.42
attribute Reads_Mapping_to_Assembly long_name String Reads_mapping_to_assembly
attribute Reads_Mapping_to_Assembly units String ranging 0-100%.
variable Reads_Mapping_to_rMAGs float
attribute Reads_Mapping_to_rMAGs actual_range float 8.8, 30.5
attribute Reads_Mapping_to_rMAGs long_name String Reads_mapping_to_rmags
attribute Reads_Mapping_to_rMAGs units String ranging 0-100%.

 
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