BCO-DMO ERDDAP
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Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.998962.1
attribute NC_GLOBAL Easternmost_Easting double -75.66
attribute NC_GLOBAL geospatial_lat_max double 37.81
attribute NC_GLOBAL geospatial_lat_min double 29.24
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -75.66
attribute NC_GLOBAL geospatial_lon_min double -90.0
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://osprey.bco-dmo.org/dataset/998962 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended\nfor legal use, since it may contain inaccuracies. Neither the data\nContributor, ERD, NOAA, nor the United States Government, nor any\nof their employees or contractors, makes any warranty, express or\nimplied, including warranties of merchantability and fitness for a\nparticular purpose, or assumes any legal liability for the accuracy,\ncompleteness, or usefulness, of this information.
attribute NC_GLOBAL Northernmost_Northing double 37.81
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 29.24
attribute NC_GLOBAL summary String For host–parasite interactions, genotype-by-sequencing can allow the simultaneous examination of host and parasite genomes and can yield insight into co-evolutionary processes. The eastern oyster, Crassostrea virginica, is among the most important aquacultured species in the United States. Natural and farmed oyster populations can be heavily impacted by ‘dermo' disease caused by an alveolate protist, Perkinsus marinus. Here, we used restricted site-associated DNA sequencing (RADseq) to simultaneously examine the spatial population genetic structure of host and parasite. We analyzed 393 single-nucleotide polymorphisms (SNPs) for P. marinus and 52,100 SNPs for C. virginica from 36 individual oysters from the Gulf of Mexico (GOM) and mid-Atlantic coastline. \n\nThis dataset includes metadata, methods, links to published code and processed data used to generate figures for results publication Weatherup et al. (2024, doi:10.1017/S0031182024000611) titled \"Co-phylogeographic structure in a disease-causing parasite and its oyster host.\" This dataset also includes genetic accession identifiers for sequence data contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA), available under BioProject PRJNA1074361.
attribute NC_GLOBAL title String [Co-phylogeny of Perkinsus-Crassostrea] - RADseq SNP genotypes of Perkinsus marinus and Crassostrea virginica from the Gulf of Mexico and eastern Atlantic shorelines collected from 2011-2019 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite)
attribute NC_GLOBAL Westernmost_Easting double -90.0
variable BioSample String
attribute BioSample long_name String Biosample
attribute BioSample units String unitless
variable sample_name String
attribute sample_name long_name String Sample_name
attribute sample_name units String unitless
variable organism String
attribute organism long_name String Organism
attribute organism units String unitless
variable isolate String
attribute isolate long_name String Isolate
attribute isolate units String unitless
variable host String
attribute host long_name String Host
attribute host units String unitless
variable isolation_source String
attribute isolation_source long_name String Isolation_source
attribute isolation_source units String unitless
variable geo_loc_name String
attribute geo_loc_name long_name String Geo_loc_name
attribute geo_loc_name units String unitless
variable tissue String
attribute tissue long_name String Tissue
attribute tissue units String unitless
variable date_collection String
attribute date_collection long_name String Date_collection
attribute date_collection units String unitless
variable siteName String
attribute siteName long_name String Sitename
attribute siteName units String unitless
variable State String
attribute State long_name String State
attribute State units String unitless
variable Region String
attribute Region long_name String Region
attribute Region units String unitless
variable Region2 String
attribute Region2 long_name String Region2
attribute Region2 units String unitless
variable Storage String
attribute Storage long_name String Storage
attribute Storage units String unitless
variable latitude float
attribute latitude _CoordinateAxisType String Lat
attribute latitude actual_range float 29.24, 37.81
attribute latitude axis String Y
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude float
attribute longitude _CoordinateAxisType String Lon
attribute longitude actual_range float -90.0, -75.66
attribute longitude axis String X
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable Accesion String
attribute Accesion long_name String Accesion
attribute Accesion units String unitless
variable BioProject String
attribute BioProject long_name String Bioproject
attribute BioProject units String unitless

 
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