[Southern Ocean foraminifer N isotopes] - Planktic foraminifer tissue and shell d15N from net tows on R/V S.A. Agulhas II cruises VOY016 and VOY019 in the Southern Ocean south of Africa during 2015-2016 (High-resolution, Assemblage-specific Records of Diatom-bound N Isotopes from the Indian Sector of the Antarctic Ocean)

This dataset synthesizes net-tow data (foraminifera and zooplankton measurements) with tow-depth seawater measurements (physical and chemical properties) and surface measurements of bulk suspended particulate organic nitrogen (PON) collected from the underway intake (7 m depth).

cdm_data_type = Other
VARIABLES:
cruise (unitless)
ship (unitless)
tow (unitless)
date (unitless)
time_starttow (unitless)
time_endtow (unitless)
species (unitless)
type (unitless)
analysis_year (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
d15N_foram_avg (D15 N Foram Avg, per mil vs AIR)
d15N_foram_sd (D15 N Foram Sd, per mil vs AIR)
d15N_foram_n (D15 N Foram N, unitless)
indiv_avg (unitless)
indiv_sd (unitless)
indiv_n (unitless)
Ni_avg (nanomoles per individual (nmol/indiv))
Ni_sd (nanomoles per individual (nmol/indiv))
Ni_n (unitless)
Nw_avg (nanomoles per milligram (nmol/mg))
Nw_sd (nanomoles per milligram (nmol/mg))
Nw_n (unitless)
d15N_avg_nitrate (Mole Concentration Of Nitrate In Sea Water, per mil vs AIR)
... (20 more variables)


[Southern Ocean particulate organic N isotopes] - Bulk suspended PON d15N from several cruises conducted in the Southern Ocean south of Africa from 2012-2019 (High-resolution, Assemblage-specific Records of Diatom-bound N Isotopes from the Indian Sector of the Antarctic Ocean)

Compilation of surface measurements of bulk suspended particulate organic nitrogen (PON) collected from the Southern Ocean south of Africa (spanning 0-42\u00b0E). Date, time, latitude, and longitude are the averages of the start and end values of each underway collection.

cdm_data_type = Other
VARIABLES:
cruise (unitless)
leg (unitless)
ship (unitless)
date (unitless)
time2 (Time, unitless)
latitude (degrees_north)
longitude (degrees_east)
PONconc_avg (micrometers (µm))
PONconc_sd (micrometers (µm))
PONconc_n (unitless)
PONd15N_avg (PONd15 N Avg, per mil vs AIR)
PONd15N_sd (PONd15 N Sd, per mil vs AIR)
PONd15N_n (PONd15 N N, unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Southern Ocean seawater N isotopes] - Nitrate+nitrite and nitrate-only d15N from R/V S.A. Agulhas II cruises VOY016 and VOY019 in the Southern Ocean south of Africa during 2015-2016 (High-resolution, Assemblage-specific Records of Diatom-bound N Isotopes from the Indian Sector of the Antarctic Ocean)

Nitrate+nitrite and nitrate-only d15N from the Southern Ocean south of Africa. The dataset includes hydrocast (depth-profile) and underway (surface; intake at 7 m depth) data. The former is accompanied by hydrographic data obtained during the CTD cast.

cdm_data_type = Other
VARIABLES:
cruise (unitless)
ship (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
date (unitless)
time2 (Time, unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
depth_ctd (Depth, meters (m))
pressure_ctd (decibars (db))
temperature_ctd (degrees Celsius)
salinity_ctd (Sea Water Practical Salinity, psu)
oxygen_ctd (milliliters per liter (ml/l))
fluorescence_ctd (milligrams per cubic meter (mg/m3))
potdens_calc (kilograms per cubic meter (kg/m3))
MLD_calc (meters (m))
d15N_avg_nitrate_nitrite (Mole Concentration Of Nitrate In Sea Water, per mil vs AIR)
d15N_stdev_nitrate_nitrite (Mole Concentration Of Nitrate In Sea Water, per mil vs AIR)
d15N_n_nitrate_nitrite (D15 N N Nitrate Nitrite, unitless)
conc_avg_nitrate_nitrite (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))
conc_stdev_nitrate_nitrite (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))
conc_n_nitrate_nitrite (unitless)
d15N_avg_nitrate (Mole Concentration Of Nitrate In Sea Water, per mil vs AIR)
d15N_stdev_nitrate (Mole Concentration Of Nitrate In Sea Water, per mil vs AIR)
d15N_n_nitrate (D15 N N Nitrate, unitless)
conc_avg_nitrate (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))
conc_stdev_nitrate (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))
conc_n_nitrate (unitless)


[Southern Ocean zooplankton N isotopes] - Size-fractionated zooplankton d15N from net tows on R/V S.A. Agulhas II cruises VOY016 and VOY019 in the Southern Ocean south of Africa during 2015-2016 (High-resolution, Assemblage-specific Records of Diatom-bound N Isotopes from the Indian Sector of the Antarctic Ocean)

This dataset contains N isotope measurements of the different size-fractions of zooplankton collected by net tows.

cdm_data_type = Other
VARIABLES:
cruise (unitless)
ship (unitless)
tow (unitless)
date (unitless)
time_starttow (unitless)
time_endtow (unitless)
size_fraction (micrometers (um))
notes (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
d15Nzoop_avg (D15 Nzoop Avg, per mil vs AIR)
d15Nzoop_sd (D15 Nzoop Sd, per mil vs AIR)
d15Nzoop_n (D15 Nzoop N, unitless)
time (ISO Date Time UTC Starttow, seconds since 1970-01-01T00:00:00Z)
ISO_DateTime_UTC_endtow (ISO Date Time UTC Endtow, unitless)


[Spatial surveys of carbonate chemistry in Kaneohe Bay] - Spatial surveys of carbonate chemistry conducted in Kaneohe Bay, Hawaii from small boats during 2015 to 2017 (CAREER: Biogeochemical Modification of Seawater CO2 Chemistry in Near-Shore Environments: Effect of Ocean Acidification)

General study design:\r\nIn this study, seawater carbonate chemistry samples were collected across a spatial array of stations across the barrier reef flat of K\u0101ne\u02bbohe Bay, Hawai\u02bbi. The study was designed to assess spatial variability in carbonate chemistry across the barrier reef flat during the 2015 fall coral bleaching event and during a year of recovery following the coral bleaching.

cdm_data_type = Other
VARIABLES:
sample (unitless)
reefstatus (unitless)
date (unitless)
time2 (Time, unitless)
latitude (degrees_north)
longitude (degrees_east)
temp (Temperature, degrees Celsius)
sal (psu)
ta (micromoles per kilogram (umol/kg))
dic (micromoles per kilogram (umol/kg))
time (ISO Date Time Local, seconds since 1970-01-01T00:00:00Z)


[SPC-UW-ZooCam classified zooplankton images] - Classified Zooplankton ZooCam Images Captured by the Hoodsport ORCA Profiling Mooring Mounted SPC-2 Zoocam in the Hood Canal, Puget Sound, Washington from July to September 2018 (Zooplankton Swimming project) (Causes and consequences of hypoxia and pH impacts on zooplankton: Linking movement behavior  to vertical distribution.)

This dataset consists of images of individual zooplankton taken by an in-situ camera system (the SPC UW ZooCam) that was deployed on the Hoodsport ORCA profiling mooring in Hood Canal (Puget Sound), WA in summer 2018. Images were taxonomically identified by expert zooplankton ecologists. These images are sorted into folders by taxonomic identification and were used as a training set for Machine Learning classification of unknown images to study the behavior of zooplankton under varying ocean conditions.

cdm_data_type = Other
VARIABLES:
filename (unitless)
relative_filepath (unitless)
filesize_bytes (bytes)
md5sum (unitless)
latitude (degrees_north)
longitude (degrees_east)
augmented_image_flag (unitless)
datetime_utc (unitless)
roi_x (image_analysis)
roi_y (image_analysis)
roi_w (image_analysis)
roi_h (image_analysis)
roi_image_size (pixels)


[Species key for Hixon and Kindinger datasets] - Species code key for Tye Kindinger datasets on native and invasive predators in the Cayman Islands. (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

Species code key for Tye Kindinger datasets on native and invasive predators in the Cayman Islands.

cdm_data_type = Other
VARIABLES:
species_code (unitless)
scientific_name (unitless)
common_name (unitless)


[Species key] - Species key for individuals surveyed in studies conducted by M. Hixon, C. Benkwitt, and T. Kindinger in the Bahamas (Eleuthera), Bonaire, and the Cayman Islands between 2009 and 2015 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

This is a key of all species sampled in the project \Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish.\\r\n\r\nSpecies codes in each related dataset are represented as the first two letters of the genus and species. This key includes the scientific and common names for each of those codes.

cdm_data_type = Other
VARIABLES:
SPECIES_CODE (unitless)
SCIENTIFIC_NAME (unitless)
COMMON_NAME (unitless)


[species list] - Names, codes, and characteristics of species observed during reef surveys in the Bahamas (Lionfish Invasion project) (Ecological Release and Resistance at Sea: Invasion of Atlantic Coral Reefs by Pacific Lionfish)

Names, codes, and characteristics of species observed during reef surveys in the Bahamas (Lionfish Invasion project).

cdm_data_type = Other
VARIABLES:
species_code (dimensionless)
species (text)
name_change (0 or 1)
species_new (text)
common_name (text)
family (text)
transient (0 or 1)
piscivore (0 or 1)
herbivore (0 or 1)
mature_lt_5cm (0 or 1)
obligate_cleaner (0 or 1)
faculative_cleaner (0 or 1)
invertebrate (0 or 1)
LW_a (numeric)
LW_b (numeric)
LW_c (numeric)
LW_ref (code)
species_substitute (text)


[Species richness] - Species richness in and out of MPAs in Viti Levu, Fiji from 2010-2012 (Killer Seaweeds project) (Killer Seaweeds: Allelopathy against Fijian Corals)

Species richness in and out of MPAs in Viti Levu, Fiji from 2010-2012 (Killer Seaweeds project)

cdm_data_type = Other
VARIABLES:
type (unitless)
site (unitless)
status (unitless)
species (count)
year (unitless)
day (unitless)
transect (unitless)


[Specific Dynamic Action of larval grunion - Experiment 1] - Differences in mean oxygen consumption of fed and unfed larvae used to understand the metabolic cost of digestion, Specific Dynamic Action (SDA), under ocean acidification and warming treatments - Experiment 1 (RUI: Evaluating selection via ocean acidification and evolutionary responses of two coastal fishes)

These data include the differences in mean oxygen consumption of fed and unfed larvae used to understand the metabolic cost of digestion, Specific Dynamic Action (SDA), under ocean acidification and warming treatments. Data was collected in the summers of 2021 and 2022 using a microplate reader system that uses optical fluorescence to measure dissolved oxygen concentrations in water. Knowing the energetic cost of digestion under future climate change is important as studies, particularly on larval fish, begin to investigate how energy budgets will change. These data help us to understand an important part of daily metabolic costs and how that cost might change under ocean acidification and warming. Data were collected by Emma Siegfried and Dr. Darren Johnson at California State University, Long Beach. These data are from Experiment 1 and they contain delta VO2 values to describe the SDA curve for a single feeding at a single temperature (20 degrees Celsius).

cdm_data_type = Other
VARIABLES:
time_elapsed (hours)
deltaVO2 (milligrams O2 per liter per hour)
deltaVO2_SE (milligrams O2 per liter per hour)
DPH (days)


[Specific Dynamic Action of larval grunion - Experiments 2a and 2b] - Differences in mean oxygen consumption of fed and unfed larvae used to understand the metabolic cost of digestion, Specific Dynamic Action (SDA), under ocean acidification and warming treatments - Experiments 2a and 2b (RUI: Evaluating selection via ocean acidification and evolutionary responses of two coastal fishes)

These data include the differences in mean oxygen consumption of fed and unfed larvae used to understand the metabolic cost of digestion, Specific Dynamic Action (SDA), under ocean acidification and warming treatments. Data was collected in the summers of 2021 and 2022 using a microplate reader system that uses optical fluorescence to measure dissolved oxygen concentrations in water. Knowing the energetic cost of digestion under future climate change is important as studies, particularly on larval fish, begin to investigate how energy budgets will change. These data help us to understand an important part of daily metabolic costs and how that cost might change under ocean acidification and warming. Data were collected by Emma Siegfried and Dr. Darren Johnson at California State University, Long Beach. These data are from experiments 2a and 2b. Experiment 2a contains delta VO2 values to describe the SDA curve for a single feeding under 4 experimental treatments (low temperature & low CO2; low temperature & high CO2; high temperature & low CO2; high temperature & high CO2). In experiment 2a, food ration was increased at high temperatures. Experiment 2b contains delta VO2 values to describe the SDA curve for a single feeding under the same 4 experimental treatments, except that food ration was held constant across all temperature and CO2 treatments.

cdm_data_type = Other
VARIABLES:
experiment_ID (unitless)
DPH (days)
deltaVO2 (milligrams O2 per liter per hour)
deltaVO2_SE (milligrams O2 per liter per hour)
temperature (degrees Celsius)
OA_treat (unitless)
pCO2 (microatmospheres)
time_elapsed (hours)


[SPG] - Modeling bio-energetics for South Pacific Gyre marine sediment at site U1370 (Develop a 1D biogeochemical-evolutionary model for deep sediments)

This data relates to the calculation of bio-energetics for South Pacific Gyre marine sediment (site U1370).

cdm_data_type = Other
VARIABLES:
latitude (degrees_north)
longitude (degrees_east)
Depth_below_SWI (Depth, meters (m))
Age (years)
Porosity (unitless)
TOC (grams of Carbon per centimeter cubed (g C/cm3))
POC_degradation_rate (grams of Carbon per centimeter cubed per year (g C cm-3 y-1))
Biomass (cells per centimeter cubed (cells/cm3))
Necromass_produced (cells per centimeter cubed per year (cells cm-3 y-1))
Specific_death_rate (per year (y-1))
Small_cell_size_Necromass_C_mass (grams of Carbon per centimeter cubed per year (g C cm-3 y-1))
small_size_power_from_necromass_plus_O2 (Jules per year (J y-1))
Medium_cell_size_Necromass_C_mass (grams of Carbon per centimeter cubed per year (g C cm-3 y-1))
medium_size_power_from_necromass_plus_O2 ((J y-1))
Large_cell_size_Necromass_C_mass (grams of Carbon per centimeter cubed per year (g C cm-3 y-1))
large_size_power_from_necromass_plus_O2 (Jules per year (J y-1))
Acetate_Power_POC_plus_O2 (Jules per year (J y-1))
Type_III_IV_kerogen_Power_POC_plus_O2 (Jules per year (J y-1))
Lipid_n_alkane_Power_POC_plus_O2 (Jules per year (J y-1))
Power_H2_plus_O2 (Jules per year (J y-1))


[spherical_par] - Photosynthetically available radiation (PAR) from R/V Endeavor cruises in the Gulf of Maine and Georges Bank in 1995 as part of the U.S. GLOBEC program (GB project) (U.S. GLOBEC Georges Bank)

Photosynthetically available radiation (PAR) from R/V Endeavor cruises in the Gulf of Maine and Georges Bank in 1995 as part of the U.S. GLOBEC program

cdm_data_type = Other
VARIABLES:
cruiseid
platform
region
cast
station
day_local
month_local
year_local
timezone
latitude (degrees_north)
longitude (degrees_east)
time_local (hours and minutes)
depth (m)
par_d (microEinstein/meter^2/second PAR (400-700nm))
par_platform (microEinstein/meter^2/second PAR (400-700nm))


[Sponge density and cover] - Percent cover and density of sponges at multiple sites in Caribbean and Pacific from shallow to mesophotic depths (Collaborative Research: Sponge Growth is Nitrogen Limited over the Shallow to Mesophotic Depth Gradient)

Percent cover and density of sponges at multiple sites in Caribbean and Pacific from shallow to mesophotic depths.

cdm_data_type = Other
VARIABLES:
site (unitless)
latitude (degrees_north)
longitude (degrees_east)
Notes (unitless)
depth (m)
Percent_Cover (variable)
Percent_Cover_SE (percent (%))
Abundance (per meter squared (m^-2))
Abundance_SE (per meter squared (m^-2))


[Sponge Density, Morphology, and Assemblages] - Sponge Density, Morphology, and Assemblages from repeated surveys in St. Thomas, U.S. Virgin Islands, before and after the 2017 hurricane season (RAPID: Collaborative Research: Sponge resilience in the face of multiple stressors)

Prior to the 2017 hurricanes, six shallow (8-15 meter depth) reef sites had been selected from the Virgin Islands Territorial Coral Reef Monitoring Program's (TCRMP) permanent monitoring sites to study variation in sponge communities- Black Point (BP), Coculus Rock (CR), and Magens Bay (MB), which are in embayments with heavily developed watersheds. Buck Island (BI) and Savana Island (SI) are located near undeveloped offshore cays. Botany Bay (BB) is a nearshore site in a bay with a low level of watershed development.

This dataset represents sponge density, morphology, and assemblages from these repeated surveys before and after the 2017 hurricane season. We used three randomly selected transects out of the six permanently established 10-meter TCRMP transects at each site. The same three transects at each site were re-surveyed repeatedly in August 2016 (pre-hurricanes), December 2017 (10 weeks post-hurricanes), March 2018 (24 weeks post-hurricanes), November 2018 (61 weeks post-hurricanes), and July 2019 (93 weeks post-hurricanes).

cdm_data_type = Other
VARIABLES:
Year (unitless)
Site (unitless)
Latitude (degrees_north)
Longitude (degrees_east)
Transect (unitless)
pcnt_Excavating (percent)
pcnt_Encrusting (percent)
pcnt_Massive (percent)
pcnt_Upright (percent)
Sponge_density (number of sponges per square meter)
Oscarella_filipoi (unitless)
Oscarella_sp_1 (unitless)
Oscarella_sp_2 (unitless)
Plakinastrella_cf_onkodes (unitless)
Plakortis_angulospiculatus (unitless)
... (148 more variables)


[Sponge density, morphology, benthos percent cover] - Sponge density and morphology and percent cover of sponges and associated community at Virgin Islands Territorial Coral Reef Monitoring Program site, pre- and post-hurricane, 2015-2017 (RAPID: Collaborative Research: Sponge resilience in the face of multiple stressors)

Sponge density and morphology and percent cover of sponges and associated benthic community determined from videos of three transects at Virgin Islands Territorial Coral Reef Monitoring Program site, pre- and post-hurricane, 2015-2017.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Site (unitless)
site_name (unitless)
latitude (degrees_north)
longitude (degrees_east)
site_description (unitless)
Transect (unitless)
Sponge_density (sponges/meter^2)
Encrusting_pcent (percent (%))
Excavating_pcent (percent (%))
Massive_pcent (percent (%))
Upright_pcent (percent (%))
calcareous_algae (percent (%))
coral (percent (%))
cyanobacterial_mats (percent (%))
epilithic_algal_community (percent (%))
gorgonians (percent (%))
macroalgae (percent (%))
non_living (percent (%))
other_unknown_living (percent (%))
zoanthids (percent (%))


[Sponge holobiont accessions and metadata] - NCBI accessions and metadata associated with Caribbean sponge metagenomes collected from Curacao, Belize, Cayman Islands and St. Croix, 2009 and 2017-2018 (Collaborative Research: Dimensions: Evolutionary Ecology of Sponges and Their Microbiome Drives Sponge Diversity on Coral Reefs)

NCBI accessions and metadata associated with Caribbean sponge metagenomes collected from Curacao, Belize, Cayman Islands and St. Croix, 2009 and 2017-2018.

cdm_data_type = Other
VARIABLES:
BioProject (Bio Project, unitless)
BioSample (Bio Sample, unitless)
Sample_name (unitless)
sample_type (unitless)
host (unitless)
collection_date (unitless)
geographic_location (unitless)
latitude (degrees_north)
longitude (degrees_east)
source_material_identifiers (unitless)
depth_ (Depth, feet seawater (fsw) or meters)


[Sponge volume] - Sponge volume at Virgin Islands Territorial Coral Reef Monitoring Program’s (TCRMP) permanent monitoring sites, 2015-2017 (RAPID: Collaborative Research: Sponge resilience in the face of multiple stressors)

Sponge volume at Virgin Islands Territorial Coral Reef Monitoring Program\u2019s (TCRMP) permanent monitoring sites, 2015-2017.

cdm_data_type = Other
VARIABLES:
year (unitless)
site (unitless)
site_name (unitless)
site_description (unitless)
latitude (degrees_north)
longitude (degrees_east)
quadrat (unitless)
sponge_volume (centimeters^3 of sponge/meter^2 (cm3/m2))


[Sponge-Associated Microbial Communities (via 16S-V4 rRNA amplicon  sequencing) Following Storm-Driven Flooding] - SRA accessions and collection information for 16S-V4 rRNA amplicon data from invertebrates sampled at Flower Garden Banks National Marine Sanctuary, Gulf of Mexico following Tax Day Flooding (2016), Hurricane Harvey (2017), and a no flooding year (2018) (RAPID: Collaborative Research: Impact of freshwater runoff from Hurricane Harvey on coral reef benthic organisms and associated microbial communities)

To document the effects of storm-driven freshwater runoff on\u00a0sponge-
associated microbiomes, we leveraged the heavy rainfall\u00a0associated with
Tax Day Flooding (July 2016) and Hurricane Harvey\u00a0(August 2017) to
characterize sponge-associated bacterial communities\u00a0at five time points:
in July 2016 (at detection of the mortality\u00a0event), one month after the
mortality event (August 2016), immediately\u00a0after Hurricane Harvey
(September 2017), one month after Hurricane\u00a0Harvey (October 2017), and
approximately one year following Hurricane\u00a0Harvey (October 2018).

These data contain Sequence Read Archive (SRA) and BioSample accession numbers
associated with BioProject\u00a0PRJNA605902
(see\u00a0[https://www.ncbi.nlm.nih.gov/bioproject/605902](\\https://www.ncbi.nlm.nih.gov/bioproject/605902\\))\u00a0at
The National Center for Biotechnology Information.

cdm_data_type = Other
VARIABLES:
Sample_Name (unitless)
Collection_Date_Start (unitless)
Collection_Date_End (unitless)
Depth_min (Depth, meters (m))
depth (m)
Bank (unitless)
Species (unitless)
SRA (unitless)
Accession (unitless)
latitude (degrees_north)
longitude (degrees_east)


[Squid tag movement data and environmental sampling] - Squid tag movement data and environmental sampling acquired in November 2021 and May 2023 near Faial and Pico Islands, Azores archipelago. (RAPID: Too hot to hold: Effects of unseasonable warming on the Azores nekton community and its keystone taxon)

ITAGs were used to measure squid movement dynamics. The sensor package was small (12.5 × 2.6 × 2.7 cm) and was affixed using surgical sutures . Additionally, ITAGs were neutrally buoyant, hydrodynamic, and focal tagged squid exhibited normal swimming and schooling behaviors with other conspecifics. ITAGs contain an inertial measurement unit (IMU) which measures acceleration, magnetic field strength, and angular velocity. These tags were used to measure the swimming behavior or free-ranging animals in the Azores region in November 2021, and May 2023. These data provide movement intensities, behaviors, and allow us to measure the environment including light, temperature, and the animal's depth. Here, we are submitting the tag data from the free-ranging animals in matrix form (.csv).

cdm_data_type = Other
VARIABLES:
species (unitless)
year (unitless)
julian_day (unitless)
date (unitless)
latitude (degrees_north)
longitude (degrees_east)
sensor_id (unitless)
time_vector (unitless)
surge_acceleration (gravities)
sway_acceleration (gravities)
heave_acceleration (gravities)
x_magnetic_field_strength (microTesla)
y_magnetic_field_strength (microTesla)
z_magnetic_field_strength (microTesla)
x_angular_velocity (degress/sec)
y_angular_velocity (degress/sec)
z_angular_velocity (degress/sec)
red_light (micro Watts per cm2)
blue_light (micro Watts per cm2)
green_light (micro Watts per cm2)
temperature (degrees Celsius (°C))
pressure (millibar)


[Squidpop 2021 2022] - Squidpop predation data collected at various temperatures from multiple sites in San Cristobal, Galapagos from 2021-2022 (Galapagos 2021 project) (Temperature Regulation of Top-Down Control in a Pacific Upwelling System)

These data set contain results from trials used to measured predation rates by fish across time and sites showing  a temperature gradient in San Cristobal, Galapagos. We used the squidpop protocol, an assay based in setting 25 stakes with squid bait for one hour in the reefs. Afterward we count how many bait were eaten to have a measure of predation rate.  We did this on 15 sites. In 6 of this sites we conducted the assay every two months for 15 months.  Measuring the relationship between temperature and predation on reefs will allow us to understand better the role of temperature on moderating predation on marine communities.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Month (unitless)
Locality (unitless)
SamplingTrial (unitless)
Season (unitless)
Habitat (unitless)
depth (m)
Temperature (Celcius)
Time (unitless)
Squidpop (unitless)
Eaten (unitless)
Code (unitless)
Note (unitless)


[Squidpop Assay] - Relative depredation (binomial) data from a squidpop tethering experiment in summer 2017 in Back Sound, North Carolina (Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms)

Relative depredation (binomial) data from a squidpop tethering experiment in summer 2017 in Back Sound, North Carolina.

cdm_data_type = Other
VARIABLES:
Date (unitless)
SiteID (Site ID, unitless)
C_F (unitless)
latitude (degrees_north)
longitude (degrees_east)
percent_sg_cov (dimensionless)
AirTemp_C (Air Temp C, degrees Celsius (C))
WaterTemp_C (Water Temp C, degrees Celsius (C))
Salinity_PSU (Sea Water Practical Salinity, Practical Salinity Units (PSU))
Depth_m (Depth, meters (m))
HighTide (High Tide, unitless)
LowTide (Low Tide, unitless)
TimeInFromHigh (Time In From High, unitless)
Tide (unitless)
Bobber_Num (per individual)
E_I (unitless)
TimeIn (Time In, unitless)
TimeOut (Time Out, unitless)
hr1 (unitless)
hr2 (unitless)
hr24 (unitless)
time (ISO Date Time UTC In, seconds since 1970-01-01T00:00:00Z)
Notes (unitless)


[Squidpop Assays 2021] - Results from predation assays (squidpops) conducted along rocky reefs of the Western coast of San Cristobal, Galapagos from June to November 2021 to determine fish predation intensity across a spatial and temporal temperature gradient (The Role of Temperature in Regulating Herbivory and Algal Biomass in Upwelling Systems)

This dataset contains results from predation assays (squidpops) to determine fish predation intensity across a spatial and temporal gradient of temperature. Assays were conducted between June and November 2021 at six locations of rocky reefs along the Western coast of San Cristobal, the eastern Island of the Galapagos Archipelago.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Month (unitless)
Date (unitless)
Time_Local (unitless)
ISO_DateTime_Local (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Code1 (unitless)
Locality (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Season (unitless)
Habitat (unitless)
depth (m)
Temperature (degrees Celsius)
Squidpop (unitless)
Eaten (unitless)
Code2 (unitless)


[SR2114 MOCNESS Net Data] - MOCNESS net data from R/V Sally Ride cruise SR2114 in the Eastern Tropical Pacific from December 2021 to January 2022 (Collaborative Research: Multiyear autonomous measurement of N-loss in the ETNP ODZ)

This dataset includes the environmental data (salinity, temperature, oxygen, density, depth) from the eight MOCNESS tows on the SR2114 expedition onboard the R/V Sally Ride in December 2021 to January 2022. It also includes the larval abundance of the most abundant species and the zooplankton biovolume, as well as the larval abundance by development stage. These results are published in Gutierrez Bravo, et al. (2024).

cdm_data_type = Other
VARIABLES:
Station (unitless)
Event (unitless)
MOC_Num (unitless)
Date (unitless)
NBf (unitless)
Stratum (unitless)
Distance (kilometers (km))
Density00 (grams per kilogram (g/kg))
depth (m)
latitude (degrees_north)
longitude (degrees_east)
Sbox0Mm_Kg (micromoles per kilogram (umol/kg))
Sal00 (PSU)
T090C (degrees Celsius)
Gsw_saA0 (degrees Celsius)
Gsw_ctA0 (PSU)
Biovolume (milliliters per 1000 cubic meters)
Larval_Abundance (larvae per 1000 cubic meters)
Auxis_sp (larvae per 1000 cubic meters)
Benthosema_panamense (larvae per 1000 cubic meters)
Bregmaceros_bathymaster (larvae per 1000 cubic meters)
Cyclothone_sp (larvae per 1000 cubic meters)
Diaphus_pacificus (larvae per 1000 cubic meters)
... (11 more variables)


[Srednick et al. 2020 - L&O Methods - Biological] - Biological data (net calcification and production) from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018 (Moorea Coral Reef Long-Term Ecological Research site)

Biological data (net calcification and production) from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018.  These data are for a proof of trial experiment for the Shallow COral REef Free Ocean Carbon Enrichment (SCORE FOCE), outlined in Srednick et al. (2020).

cdm_data_type = Other
VARIABLES:
Date (untiless)
Flume (unitless)
Sampling_Period (unitless)
NCC (mmol CaCO3 m-2 h-1)
NCP (mmol O2 m-2 h-1)


[Srednick et al. 2020 - L&O Methods - DO] - Dissolved oxygen (DO) from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018 (Moorea Coral Reef Long-Term Ecological Research site)

Dissolved oxygen (DO) from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018.  These data are for a proof of trial experiment for the Shallow COral REef Free Ocean Carbon Enrichment (SCORE FOCE), outlined in Srednick et al. (2020).

cdm_data_type = Other
VARIABLES:
Date (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
DO_F1 (mg/L)
DO_F2 (mg/L)
Time_of_Day (unitless)


[Srednick et al. 2020 - L&O Methods - DO_flux] - Dissolved oxygen (DO) flux from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018 (Moorea Coral Reef Long-Term Ecological Research site)

Dissolved oxygen flux from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018.  These data are for a proof of trial experiment for the Shallow COral REef Free Ocean Carbon Enrichment (SCORE FOCE), outlined in Srednick et al. (2020).

cdm_data_type = Other
VARIABLES:
Date (untiless)
Day (unitless)
time2 (Time, unitless)
Flume (unitless)
DO (mg/L/h)


[Srednick et al. 2020 - L&O Methods - Flow] - Flume flow data from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018 (Moorea Coral Reef Long-Term Ecological Research site)

Flume flow data from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018.  These data are for a proof of trial experiment for the Shallow COral REef Free Ocean Carbon Enrichment (SCORE FOCE), outlined in Srednick et al. (2020).

cdm_data_type = Other
VARIABLES:
POSITION (unitless)
F1_Velocity_AVG (cm/s)
F1_Velocity_SD (cm/s)
F2_Velocity_AVG (cm/s)
F2_Velocity_SD (cm/s)


[Srednick et al. 2020 - L&O Methods - PAR] - Photosynthetically active radiation (PAR) from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018 (Moorea Coral Reef Long-Term Ecological Research site)

Photosynthetically active radiation (PAR) from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018.  These data are for a proof of trial experiment for the Shallow COral REef Free Ocean Carbon Enrichment (SCORE FOCE), outlined in Srednick et al. (2020).

cdm_data_type = Other
VARIABLES:
Date (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
PAR (Downwelling Photosynthetic Photon Radiance In Sea Water, umol photons m-2 s-1)
Flume (unitless)


[Srednick et al. 2020 - L&O Methods - pCO2] - Partial pressure of carbon dioxide (pCO2) from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018 (Moorea Coral Reef Long-Term Ecological Research site)

Partial pressure of carbon dioxide (pCO2) from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018.  These data are for a proof of trial experiment for the Shallow COral REef Free Ocean Carbon Enrichment (SCORE FOCE), outlined in Srednick et al. (2020).

cdm_data_type = Other
VARIABLES:
Date (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
Flume (unitless)
pCO2 (P CO2, uatm)
Time_of_day (unitless)


[Srednick et al. 2020 - L&O Methods - pH seafet] - pH from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018 (Moorea Coral Reef Long-Term Ecological Research site)

pH measured by a seafet sensor from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018.  These data are for a proof of trial experiment for the Shallow COral REef Free Ocean Carbon Enrichment (SCORE FOCE), outlined in Srednick et al. (2020).

cdm_data_type = Other
VARIABLES:
Date (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
Flume (unitless)
pH (Sea Water Ph Reported On Total Scale, pH total scale)


[Srednick et al. 2020 - L&O Methods - TA_SAL] - Alkalinity and salinity from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018 (Moorea Coral Reef Long-Term Ecological Research site)

Alkalinity and salinity from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018.  These data are for a proof of trial experiment for the Shallow COral REef Free Ocean Carbon Enrichment (SCORE FOCE), outlined in Srednick et al. (2020).

cdm_data_type = Other
VARIABLES:
Date (untiless)
Flume (unitless)
Sampling_Period (unitless)
Time_i (unitless)
Initial_Ta_avg (umol kg-1)
Initial_Sal (Practical Salinity Units (PSU))
Time_f (unitless)
Final_Ta_avg (umol kg-1)
Final_Sal (Practical Salinity Units (PSU))
time (ISO Date Time I UTC, seconds since 1970-01-01T00:00:00Z)


[Srednick et al. 2020 - L&O Methods - temperature] - Temperature from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018 (Moorea Coral Reef Long-Term Ecological Research site)

Temperature from in-situ flume experiments to manipulate pCO2 on shallow tropical coral reef communities at UCB Gump Research Station Moorea, French Polynesia in May of 2018.  These data are for a proof of trial experiment for the Shallow COral REef Free Ocean Carbon Enrichment (SCORE FOCE), outlined in Srednick et al. (2020).

cdm_data_type = Other
VARIABLES:
Date (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
Temp (Temperature, degrees Celsius)
Flume (unitless)


[sss] - Sea surface temperature, salinity and fluorescence from sensors on R/V Endeavor cruise EN256 in the Gulf of Maine and Georges Bank in October, 1994 as part of the U.S. GLOBEC program (GB project) (U.S. GLOBEC Georges Bank)

Sea surface temperature, salinity and fluorescence from sensors on R/V Endeavor cruise EN256 in the Gulf of Maine and Georges Bank in October, 1994 as part of the U.S. GLOBEC program (GB project)

cdm_data_type = Other
VARIABLES:
cruiseid (n/a)
julian_day_time (GMT)
temp (Temperature, degrees C)
sal (PSU)
fluorescence (volts)
quality_flag (n/a)


[St John Octocoral Abundances 2019] - Octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands during June-October 2019 (Collaborative Research: Pattern and process in the abundance and recruitment of Caribbean octocorals)

This dataset contains octocoral colony heights measured during transect surveys at four sites on the south shore of St. John, US Virgin Islands in June-October 2019.\r\n\r\nThese data are a continuation of BCO-DMO project 562086 (https://www.bco-dmo.org/project/562086) and BCO-DMO project 749653 (https://www.bco-dmo.org/project/749653).

cdm_data_type = Other
VARIABLES:
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
Census_Year (unitless)
time (seconds since 1970-01-01T00:00:00Z)
Transect_Position (unitless)
Side_of_transect (unitless)
Meter_on_transect (unitless)
Genus (unitless)
Species_code (unitless)
Genus_Species (unitless)
Height_of_living_tissue (centimeters (cm))
Total_height (centimeters (cm))
Basal_damage (centimeters (cm))
Damage (unitless)
Cyphoma_present (unitless)
Comments_1 (unitless)
Comments_2_sample_tag_number (unitless)


[Stable C and O isotopes for Guaymas Basin and Sonora Margin sediments] - d13C and d18O isotopic data for carbonate nodules and sedimentary carbonates in Guaymas Basin and Sonora Margin sediments collected from R/V El Puma, leaving Guaymas on October 14, 2014 and returning to Mazatlan on October 27, 2014 (RAPID proposal: Site characterization cruise to document the active and extensive subsurface biosphere in the Guaymas Basin)

d13C and d18O isotopic data for carbonate nodules and sedimentary carbonates in Guaymas Basin and Sonora Margin sediments collected from R/V El Puma (the Pacific Coast research vessel of the Autonomous University of Mexico) from October 14, 2014 to October 27, 2014.\r\n\r\nData for each core include: sample identification (core No., section number, cm within section, sample type), total sediment depth in cm, and d\u00b9\u00b3C isotopic composition in permille. background = sediment around the nodule.

cdm_data_type = Other
VARIABLES:
Core_section_cm (unitless)
cm_in_core (centimeters (cm))
sample_type (unitless)
d13C (D13 C, per mil (‰))
d13C_stdev (D13 C Stdev, per mil (‰))
d18O (D18 O, per mil (‰))
d18O_stdev (D18 O Stdev, per mil (‰))


[Stable Isotope measurements – experimental animals] - Carbon and Nitrogen stable isotope measurements for experimental animals used in laboratory-based experiments collected from the Gulf of Mexico Estuary near Port Aransas, Texas from 2020 to 2022 (Counter-gradient Flow of Fatty Acids in Marine Food Webs Through Egg Boons)

Carbon and Nitrogen stable isotope measurements for experimental animals used in laboratory-based experiments collected from the Gulf of Mexico Estuary near Port Aransas, Texas from 2020 to 2022. Laboratory experiments took place at the Fisheries and Mariculture Laboratory of the University of Texas Marine Science Institute from July 2021 to November 2022.

cdm_data_type = Other
VARIABLES:
Taxon (unitless)
Tissue_sampled (unitless)
Length (centimeters (cm))
Tank_number (unitless)
Acclimation_days (days)
Days_after_acclimation (days)
Treatment (unitless)
Diet_fed (unitless)
Notes (unitless)
Primary_check (unitless)
d13C (per mil)
percent_C (percentage)
d15N (per mil)
percent_N (percentage)


[Stable Isotope measurements – field and lab samples] - Carbon and Nitrogen stable isotope measurements for various marine samples collected from the Gulf of Mexico as well as eggs, animals, and food sources collected in the laboratory and commercial sources from 2020 to 2022. (Counter-gradient Flow of Fatty Acids in Marine Food Webs Through Egg Boons)

Carbon and Nitrogen stable isotope measurements for various marine samples collected from the Gulf of Mexico Estuary near Port Aransas, Texas from 2020 to 2022 as well as eggs, animals, and food sources from the laboratory and commercial sources from 2020 to 2022.

cdm_data_type = Other
VARIABLES:
Taxon (unitless)
Common_name (unitless)
Sample_ID (unitless)
Classification (unitless)
Weight (milligrams (mg))
Date_collected (unitless)
Site (unitless)
Length (centimeters (cm))
Notes (unitless)
Primary_check (unitless)
d13C (per mil)
percent_C (percentage)
d15N (per mil)
percent_N (percentage)


[Stable Isotopes and Elemental Ratios] - C and N stable isotopes and elemental ratios of high and low molecular weight (HMW, LMW) DOM collected from the North Pacific Subtropical Gyre and Central North Atlantic determined by elemental analyzer isotope ratio mass spectrometry (EA-IRMS) (The Microbial Nitrogen Pump: Coupling 14C and Compound-specific Amino Acids to Understand the Role of Microbial Transformations in the Refractory Ocean DON Pool)

C and N stable isotopes and elemental ratios of high and low molecular weight (HMW, LMW) DOM collected from the North Pacific Subtropical Gyre and Central North Atlantic determined by elemental analyzer isotope ratio mass spectrometry (EA-IRMS). These data were published in Broek et al. (2019) and Broek et al. (2017).

cdm_data_type = Other
VARIABLES:
location (unitless)
year (unitless)
season (unitless)
sample_type (unitless)
depth (m)
wt_pcnt_C (unitless (percent))
wt_pcnt_C_stdev (unitless (percent))
wt_pcnt_N (unitless (percent))
wt_pcnt_N_stdev (unitless (percent))
d15N (D15 N, permil (‰))
d15N_stdev (D15 N Stdev, permil (‰))
d13C (D13 C, permil (‰))
d13C_stdev (D13 C Stdev, permil (‰))
C_N_ratio (unitless)
C_N_ratio_stdev (unitless)


[Stable Isotopes in Reactive Si Pools] - Stable isotopes in reactive silica pools of Mississippi River plume sediments collected aboard the R/V Pelican in May 2017 (The biotic and abiotic controls on the Silicon cycle in the northern Gulf of Mexico)

Stable isotopes in reactive silica pools of Mississippi River plume sediments collected aboard the R/V Pelican in May 2017

cdm_data_type = Other
VARIABLES:
Cruise_Collected (dimensionless)
MultiCore (Multi Core, number/identification)
Station_Number (dimensionless)
Bottom_Depth (meters)
latitude (degrees_north)
longitude (degrees_east)
Date_Collected (unitless)
Time_Collected (HHMM)
Sample_Depth (centimeters)
Nominal_Depth (centimeters)
Porewater (uM)
Vapor_Phase_Carbonate (%)
POC (Particulate Organic Carbon, %)
POC_2_Stdev (dimensionless)
PON (%)
PON_2_Stdev (dimensionless)
Reactive_Pool_Treatment (unitless)
Avg_d30Si (Avg D30 Si, 0/00)
Avg_d30Si_2_Stdev (Avg D30 Si 2 Stdev, dimensionless)
Avg_Si_Released (Mass Concentration Of Silicate In Sea Water, umol/g)
Avg_Si_Released_2_Stdev (Mass Concentration Of Silicate In Sea Water, dimensionless)
Mg (ppm)
Al (ppm)
K (ppm)
Ti (ppm)
V (ppm)
... (6 more variables)


[Station AT55 Temperature mooring data] - Temperature mooring data collected at Station AT55 in Lake Michigan from August 1, 2017 to April 20, 2018. (Collaborative Research: Regulation of plankton and nutrient dynamics by hydrodynamics and profundal filter feeders)

A fixed mooring was established to measure water column temperatures in Lake Michigan near Milwaukee, WI, from Aug 1 \u2013 Aug 17, 2017 at a 55 meters depth site and again during 2018 from April 5 \u2013 April 20, 2018. The mooring involved a large tripod to which a surface line was attached and along this line were temperature sensors at various depths.

cdm_data_type = Other
VARIABLES:
HAB_cm (centimeters (cm))
HAB_m (meters (m))
temp (Temperature, degrees Celsius)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
latitude (degrees_north)
longitude (degrees_east)


[Station locations] - Station locations for the global metaproteomic dataset from R/V Kilo Moana cruise KM1128, the METZYME expedition in the tropical North Pacific in 2011. (Connecting Trace Elements and Metalloenzymes Across Marine Biogeochemical Gradients)

Station locations for the global metaproteomic dataset from R/V Kilo Moana cruise KM1128, the METZYME expedition in the tropical North Pacific in 2011.

cdm_data_type = Other
VARIABLES:
cruise (unitless)
station_ID (unitless)
station_number (unitless)
depth (m)
McLane_cast (Mc Lane Cast, unitless)
McLane_date_local (Mc Lane Date Local, unitless)
McLane_time_local (Mc Lane Time Local, unitless)
latitude (degrees_north)
longitude (degrees_east)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[station_plans] - Broad-scale station numbers and locations from the US-GLOBEC Georges Bank project (U.S. GLOBEC Georges Bank)

Broad-scale station numbers and locations from the US-GLOBEC Georges Bank project

cdm_data_type = Other
VARIABLES:
year (unitless)
description (n/a)
station (n/a)
lat_deg (Latitude, degrees)
lat_min (Latitude, minutes)
lat_ddmm_tt (Latitude, ddmm.tt)
lon_deg (Longitude, degrees)
lon_min (Longitude, minutes)
lon_ddmm_tt (Longitude, ddmm.tt)
latitude (degrees_north)
longitude (degrees_east)
depth_w (Depth, meters)
distance (nautical miles)
priority (n/a)


[Stegastes planiforms attack behavior towards invasive lionfish] - Experimental results describing Stegastes planiforms attack behavior towards Pterois volitans and native predators in the Cayman Islands and the Bahamas during 2011 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

Experimental results describing Stegastes planiforms attack behavior towards Pterois volitans and native predators in the Cayman Islands and the Bahamas during 2011

cdm_data_type = Other
VARIABLES:
location (unitless)
latitude (degrees_north)
longitude (degrees_east)
bottle_treatment (unitless)
damsel_number (unitless)
charge (unitless)
nip (unitless)
butt (unitless)
continuous_attack (unitless)


[Stegastes planiforms attack rate towards invasive lionfish] - Experimental results describing Stegastes planiforms attack rates towards Pterois volitans and native predators in the Cayman Islands and the Bahamas during 2011 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

Experimental results describing Stegastes planiforms attack rates towards Pterois volitans and native predators in the Cayman Islands and the Bahamas during 2011

cdm_data_type = Other
VARIABLES:
location (unitless)
latitude (degrees_north)
longitude (degrees_east)
bottle_treatment (unitless)
habitat (unitless)
habitat_type (unitless)
damsel_number (unitless)
distance (centimeters)
attack_rate (count)


[Stegastes planiforms attacks by predator] - Experimental results indicating which predators were attacked by Stegastes planiforms in the Cayman Islands and the Bahamas during 2011 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

Experimental results indicating which predators were attacked by Stegastes planiforms in the Cayman Islands and the Bahamas during 2011

cdm_data_type = Other
VARIABLES:
location (unitless)
latitude (degrees_north)
longitude (degrees_east)
bottle_treatment (unitless)
habitat (unitless)
damsel_number (unitless)
attack (unitless)


[Stillwater Cove temperature time series] - Temperature time-series data from 4 depths in the Central California kelp forest, measured at the Stillwater Cove Mooring from 2010-2012 (Climate Change Kelp project) (Effects of ocean climate change on recruitment of kelp populations)

Temperature data from 4 depths at the study site in the giant kelp forest habitat of the Central California Coast. Temperature was recorded every 5 minutes from June 2010 to October 2012.

cdm_data_type = Other
VARIABLES:
site (text)
site_descrip (text)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
depth_comment (Depth, text)
year_local (unitless)
month_local (unitless)
day_local (unitless)
time_local (unitless)
temp (Temperature, degrees Celsius)
yrday_local (dimensionless)
ISO_DateTime_Local (ISO Date Time Local, unitless)


[STING I and STING II extracted chlorophyll a and pheophytin] - Chlorphyll a and pheophytin from two cruises performed as part of the STING project from R/V Atlantic Explorer AE2305 (Sting I cruise) and R/V Endeavor EN704 (Sting II cruise) in the Gulf of Mexico near Florida from February to July 2023 (Collaborative Research: Linking iron and nitrogen sources in an oligotrophic coastal margin: Nitrogen fixation and the role of boundary fluxes)

These data include the average (n=3 replicates per measurement) measured chlorphyll a and pheophytin from two cruises performed as part of the STING project.  STING I (AE2305) was aboard the R/V Atlantic Explorer from 2023-02-20 to 2023-03-06. STING II (EN704) was aboard the R/V Endeavor from 2023-07-01 to 2023-07-12.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Station (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
Date (unitless)
STING_ID (unitless)
Collection (unitless)
Type (unitless)
Chla (micrograms/liter (ug/l))
Pheophytin (micrograms/liter (ug/l))


[STING macronutrient concentrations] - Dissolved Macronutrient Concentrations from Depth Profiles and Incubation Experiments from STING I Cruise AE2305 on R/V Atlantic Explorer in the Gulf of Mexico from February to March 2023 (Collaborative Research: Linking iron and nitrogen sources in an oligotrophic coastal margin: Nitrogen fixation and the role of boundary fluxes)

Concentrations of inorganic dissolved macronutrients, including phosphate, nitrate plus nitrite (N+N), silicic acid, and nitrite, from phytoplankton shipboard incubation experiments and depth profiles collected on STING I cruise AE2305 on R/V Atlantic Explorer in the Gulf of Mexico from February to March 2023.

This project investigates how groundwater discharge delivers important nutrients to the coastal ecosystems of the West Florida Shelf. Preliminary studies indicate that groundwater may supply both dissolved organic nitrogen (DON) and iron in this region. In coastal ecosystems like the West Florida Shelf that have very low nitrate and ammonium concentrations, DON is the main form of nitrogen available to organisms. Nitrogen cycling is strongly affected by iron availability because iron is essential for both photosynthesis and for nitrogen fixation. This study will investigate the sources and composition of DON and iron, and their influence on the coastal ecosystem. The team will sample offshore groundwater wells, river and estuarine waters, and conduct two expeditions across the West Florida Shelf in winter and summer.

cdm_data_type = Other
VARIABLES:
EVTNBR (unitless)
ISO_DateTime_UTC (unitless)
DATE_UTC (unitless)
TIME_UTC (unitless)
DATE_GMT (unitless)
TIME_GMT (unitless)
latitude (degrees_north)
longitude (degrees_east)
PLATFORM (unitless)
CASTNBR (unitless)
STNNBR (unitless)
BTLNBR (unitless)
depth (m)
NO3_NO2 (micromoles per liter (uM))
... (16 more variables)


[Stress bands bleaching] - Comparison of bleaching data to stress bands in Porites corals on Palau reefs (Constraining Thermal Thresholds and Projections of Temperature Stress on Pacific Coral Reefs Over the 21st Century: Method Refinement and Application)

Comparison of bleaching data to stress bands in Porites corals on Palau reefs.

cdm_data_type = Other
VARIABLES:
site (unitless)
reef_type (unitless)
latitude (degrees_north)
longitude (degrees_east)
year (unitless)
num_cores (unitless)
pcnt_stress_bands (unitless (percent))
pcnt_stress_bands_SE (unitless (percent))
mean_pcnt_bleaching (unitless (percent))
mean_pcnt_bleaching_SE (unitless (percent))


[Stress bands Jarvis] - Stress bands in coral cores collected at Jarvis Island between 2008 and 2016 (Skeletal Records of Coral Reef Bleaching in the Central Equatorial Pacific)

The dataset contains historical coral reef bleaching events on Jarvis Island reconstructed from stress bands in Porites coral cores. Samples are collected between 2008 and 2016.

cdm_data_type = Other
VARIABLES:
core_id (unitless)
date_collected (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
sb_1965_1966 (unitless)
sb_1972_1973 (unitless)
sb_1975_1976 (unitless)
sb_1982_1983 (unitless)
sb_1987_1988 (unitless)
sb_1992_1993 (unitless)
sb_1997_1998 (unitless)
sb_2002_2003 (unitless)
sb_2009_2010 (unitless)
sb_2015_2016 (unitless)


[Substrate-specific metabolic responses of model marine bacteria using proteomics] - Normalized protein abundance data and protein annotations for proteomic data from laboratory cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002 in 2022 (C-CoMP Model Bacteria Physiological Studies)

This dataset includes normalized protein abundance data and protein annotations for proteomic data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002. These model marine bacteria were grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates. The data are sampled so as to capture the metabolic differences the bacteria employ when catabolizing these different substrates and when switching between them. The raw proteomics files are available on the Proteomics IDEntification Database (PRIDE) under accession PXD045824. The proteomic data accompanies the transcriptomic expression data available at BCO-DMO dataset 916134 (https://www.bco-dmo.org/dataset/916134).

cdm_data_type = Other
VARIABLES:
Species (unitless)
Strain (unitless)
gene_callers_id (unitless)
ac_mean_abund (unitless)
glc_mean_abund (unitless)
late_mean_abund (unitless)
early_mean_abund (unitless)
SPO_ID_ACCESSION (unitless)
KOfam_ACCESSION (unitless)
KEGG_Module (unitless)
COG20_FUNCTION (unitless)
Uniprot_accession (unitless)


[Substrate-specific metabolic responses of model marine bacteria] - Metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002 grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates (C-CoMP Model Bacteria Physiological Studies)

This dataset includes metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002. These model marine bacteria were grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates. The data are sampled so as to capture the metabolic differences the bacteria employ when catabolizing these different substrates and when switching between them. The raw RNA sequences (50 bp reads in fastq format) have been submitted to the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject PRJNA972985 (https://www.ncbi.nlm.nih.gov/bioproject/972985).

cdm_data_type = Other
VARIABLES:
Sample_Name (unitless)
Accession (unitless)
BioProject (unitless)
Organism (unitless)
Strain (unitless)
Tax_ID (unitless)
Glucose_initial_concentration_uM (micromolar concentration)
Acetate_initial_concentration_uM (micromolar concentration)
Sample_description (unitless)


[Subterranean Estuary In Situ Tracer Experiment Incubation Data, 2019] - In situ tracer injection experiment conducted with 15N-labeled ammonium in a shallow, sandy subterranean estuary in Gloucester Point, USA  in August 2019. (Collaborative Research:  Cryptic nitrogen cycling in the anoxic subterranean estuary)

These data are the result of an in situ tracer injection experiment conducted with 15N-labeled ammonium to determine the fate and transport rates of ammonium within a shallow, sandy subterranean estuary in Gloucester Point, VA, USA.

Replicate injections of 15N-labeled ammonium, sulfur hexaflouride, and bromide amended porewater were injected into piezometers at 50cm.  Porewater was then collected overtime from the injection piezometers and tracer piezometers surrounding the injection site ranging in depth from 40-60cm.  At each time point, samples were collected to analyze dissolved inorganic nitrogen (nitrate, nitrite, and ammonium) concentrations, sulfur hexaflouride, bromide, chloride. Nitrate and nitrite samples from porewater were analyzed with an isotope ratio mass spectrometer in order to assess the 15N enrichment of the nitrate in each sample resulting in a delta value (d15N) that allows for the calculation of the mole fraction of 15N-labeled nitrite and nitrate in porewater at each time point. The production or consumption over time constitutes subterranean estuary nitrogen cycling rates (e.g. nitrification, denitrification, etc.).

cdm_data_type = Other
VARIABLES:
Site_Name (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Piezometer (unitless)
Sample_ID (unitless)
Time_Point (unitless)
Date (unitless)
Time (unitless)
Hours_after_Injection (hours (hrs))
Bromide_uM (micromoles per liter (uM))
Chloride_mM (millimoles per liter (mM)
SF6_ppbv (parts per billion per volume (ppbv))
SF6_pM (picoMolar (pM))
Nox_uM (micromoles per liter (uM))
... (4 more variables)


[Subterranean Estuary Sediment Nitrification Incubation Data, 2020] - Sediment Nitrification Incubation data of a subterrarnian estuary core take in July 2020 in Gloucester Point, Virginia (Collaborative Research:  Cryptic nitrogen cycling in the anoxic subterranean estuary)

These data are the result of a sediment slurry incubation experiment conducted with 15N-labeled ammonium to quantify nitrification rates in the sediments of a shallow, sandy subterranean estuary in Gloucester Point, VA, USA. Triplicate sediment cores that were 50cm in length were collected and sectioned into 10cm intervals. Homogenized sediment was incubated with porewater from the same depth interval that had been amended with 15N-labeled ammonium. Sediments were incubated in the dark for zero, six and twelve hours. At each time point, samples were collected to analyze dissolved inorganic nitrogen (nitrate, nitrite, and ammonium) concentrations. Samples were analyzed with an isotope ratio mass spectrometer in order to assess the 15N enrichment of the nitrate in each sample resulting in a delta value (d15N) that allows for the calculation of the mole fraction of 15N-labeled nitrate produced by each slurry. This production over time constitutes the sediment nitrification rate for each depth interval.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Site (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Depth_Interval (centimeter (cm))
Replicate (unitless)
Incubation_Time_Point (unitless)
Incubation_Hours (hours (hr))
Sample_ID (unitless)
NOX (micromoles per liter (uM))
NO3 (micromoles per liter (uM))
NO2 (micromoles per liter (uM))
NH4 (micromoles per liter (uM))
d15N (parts per thousand (‰))
Mole_Fraction_15N (unitless)


[Sulfate reduction energetics] - Sulfate reduction energetics at Main Endeavor grotto chimney from samples collected on RV Atlantis (AT18-08) during Jason II dives in the Juan de Fuca Ridge from July to August 2011 (Characterizing the distribution and rates of microbial sulfate reduction at Middle Valley hydrothermal vents)

Sulfate reduction energetics at Main Endeavor grotto chimney from samples collected on RV Atlantis (AT18-08) during Jason II dives in the Juan de Fuca Ridge from July to August 2011

cdm_data_type = Other
VARIABLES:
experiment_num (unitless)
latitude (degrees_north)
longitude (degrees_east)
sulfide (molar (M))
sulfate (millimoles (mM))
DOC (micromoles (uM))
citrate (molar (M))
formate (molar (M))
pyruvate (molar (M))
acetate (molar (M))
lactate (molar (M))
bicarbonate (millimoles (mM))
K (molar (M))
Ca (molar (M))
Na (molar (M))
Cl (molar (M))
pH (Sea Water Ph Reported On Total Scale, pH)
temperature (celsius (C))
sulfateRed_formate (Sulfate Red Formate, DeltaGr KJ/mol e-)
sulfateRed_acetate (Sulfate Red Acetate, DeltaGr KJ/mol e-)
sulfateRed_pyruvate (Sulfate Red Pyruvate, DeltaGr KJ/mol e-)
sulfateRed_lactate (Sulfate Red Lactate, DeltaGr KJ/mol e-)
sulfateRed_citrate (Sulfate Red Citrate, DeltaGr KJ/mol e-)
c_limiting_totalEnergy (C Limiting Total Energy, joules (J))
S_limiting_totalEnergy (joules (J))
total_energy (joules (J))


[Sulfate reduction rates] - Sulfate reduction rates at Main Endeavor grotto chimney from samples collected on RV Atlantis (AT18-08) during Jason II dives in the Juan de Fuca Ridge from July to August 2011 (Characterizing the distribution and rates of microbial sulfate reduction at Middle Valley hydrothermal vents)

Sulfate reduction rates at Main Endeavor grotto chimney from samples collected on RV Atlantis (AT18-08) during Jason II dives in the Juan de Fuca Ridge from July to August 2011

cdm_data_type = Other
VARIABLES:
inoculum (unitless)
experiment_num (unitless)
latitude (degrees_north)
longitude (degrees_east)
sulfide (molar (M))
DOC (micromoles (uM))
sulfate (millimoles (mM))
pH (Sea Water Ph Reported On Total Scale, pH)
temperature (celsius (C))
SRrate_3day (nmol/gday)
SRrate_3day_replicates (count)
SRrate_7day (nmol/gday)
SRrate_7day_replicates (count)
SRrate_inhibited (nmol/gday)
SRrate_inhibited_replicates (count)


[Sulfide concentrations] - Sulfide concentrations as a function of time from INSPIRE track 1 collected from 2013 to 2017 (INSPIRE Pyrite project) (INSPIRE Track 1: Microbial Sulfur Metabolism and its Potential for Transforming the Growth of Epitaxial Solar Cell Absorbers)

Sulfide concentrations as a function of time from INSPIRE track 1 collected from 2013 to 2017 (INSPIRE Pyrite project)

cdm_data_type = Other
VARIABLES:
experiment_type (unitless)
time2 (Time, hours)
sulfide_culture1 (micromolar (mM))
sulfide_culture2 (micromolar (mM))
sulfide_culture3 (micromolar (mM))
sulfide_culture1_Fe (micromolar (mM))
sulfide_culture2_Fe (micromolar (mM))
sulfide_culture3_Fe (micromolar (mM))
sulfide_culture4_Fe (micromolar (mM))
sulfide_control1_slow (micromolar (mM))
sulfide_control2_slow (micromolar (mM))
culture_medium (unitless)


[Sulfonates in plankton cultures] - Intracellular sulfonate metabolites measured in a variety of eukaryotic and prokaryotic phytoplankton and heterotrophic bacteria using liquid chromatography-mass spectrometry-based metabolomics (OCE-PRF Track 1 (Broadening Participation): Cryptic Sulfonate Cycling between Marine Phytoplankton and Heterotrophic Bacterioplankton)

Intracellular sulfonate metabolites were measured in a variety of eukaryotic and prokaryotic phytoplankton and heterotrophic bacteria using liquid chromatography-mass spectrometry-based metabolomics. These data have been published in Durham et al. (2019). Raw data are available at Metabolomics Workbench under Project ID PR000797.

cdm_data_type = Other
VARIABLES:
Organism (unitless)
replicate (unitless)
cells_filtered (unitless)
DHPS (amol per cell)
cysteic_acid (amol per cell)
sulfolactate (amol per cell)
isethionic_acid (amol per cell)
taurine (amol per cell)


[Sulfur NEXFS Standards] - Sulfur Near Edge X-ray Fluorescence Spectroscopy Data for standard materials (P-NEXFS investigation of the influence of aerosol phosphorus on the Mediterranean Sea)

Sulfur Near Edge X-ray Fluorescence Spectroscopy Data for standard materials.

cdm_data_type = Other
VARIABLES:
Energy (electron volts)
Ammonium_Sulfate (Mole Concentration Of Ammonium In Sea Water, x-ray fluorescence counts)
Barite (x-ray fluorescence counts)
Copper_II_Sulfate (x-ray fluorescence counts)
Gypsum (x-ray fluorescence counts)
Iron_Ammonium_Sulfate (Mole Concentration Of Ammonium In Sea Water, x-ray fluorescence counts)
Iron_III_Sulfate (x-ray fluorescence counts)
Jarosite (x-ray fluorescence counts)
Magnesium_Sulfate (x-ray fluorescence counts)
Potassium_Sulfate (x-ray fluorescence counts)
Sodium_Sulfate (x-ray fluorescence counts)


[Summary CTD data] - CTD summary data from phytoplankton monitoring sites in Juneau, AK sampled from 2015-2016 (SEAK-AHAB project) (Enhancing Sustainability of Shellfish Harvest in Alaska: Addressing the Ecology of Alexandrium Blooms and their Sociocultural Impacts)

CTD summary data from phytoplankton monitoring sites in Juneau, AK sampled from 2015-2016 (SEAK-AHAB project)

cdm_data_type = Other
VARIABLES:
year (unitless)
investigator (unitless)
instrument (unitless)
station (unitless)
latitude (degrees_north)
longitude (degrees_east)
sampling_event (unitless)
date (unitless)
time_zone (unitless)
time_local (unitless)
depth (Cast Depth, m)
surface_temp (celsius)
s_salinity (Sea Water Practical Salinity, practical salinity units (PSU))
b_salinity (Sea Water Practical Salinity, practical salinity units (PSU))
s_density (kilogram per meter cubed (kg/m3))
b_density (kilogram per meter cubed (kg/m3))
max_fluor (milligram per meter cubed (mg/m3))
data_quality (unitless)
time (ISO Date Time Local, seconds since 1970-01-01T00:00:00Z)


[Summary data from the Heatwaves and Coral-Recovery Database (HeatCRD)] - Summary data from the Heatwaves and Coral-Recovery Database (HeatCRD) covering global coral reef sites from 1977-2020 (Thermal stress and differential recovery of coral reefs)

This dataset is a summary table of the Heatwaves and Coral-Recovery Database (HeatCRD) introduced in van Woesik and Kratochwill (2024). The HeatCRD is the most comprehensive reference on coral recovery following marine heatwaves and other disturbances, encompassing 29,205 data records spanning 44 years from 12,266 sites, 83 countries, and 160 data sources. These data provide essential information to coral-reef scientists and managers to best guide coral-reef conservation efforts at both local and regional scales.
The dataset includes metadata for coral reef sampling events, such as site descriptions, geographical coordinates, depth, distance to shore, exposure, turbidity, coral cover percentages, MPA descriptions, temperature measurements, windspeed, and thermal stress indicators over 23 years.

See van Woesik and Kratochwill (2024) https://doi.org/10.1038/s41597-024-03221-3 for more information.

cdm_data_type = Other
VARIABLES:
Site_ID (unitless)
Sample_ID (unitless)
latitude (Latitude_degrees, degrees_north)
longitude (Longitude_degrees, degrees_east)
Ocean_Name (unitless)
Realm_Name (unitless)
Ecoregion_Name (unitless)
Ecoregion_distance (degrees)
Country_Name (unitless)
State_Island_Province_Name (unitless)
Location_Name (unitless)
Site_Name (unitless)
Habitat_Type (unitless)
Habitat_Distance (degrees)
Date_Day (unitless)
Date_Month (unitless)
... (59 more variables)


[Sup_Aug-10-carbon] - Radiocarbon data from R/V Blue Heron cruise BH10-14 on Lake Superior in August 2010 (Lake Superior Radiocarbon project) (How important is quote old unquote Carbon in Lake Superior.  A Radiocarbon Investigation)

Radiocarbon data from R/V Blue Heron cruise BH10-14 on Lake Superior in August 2010.

cdm_data_type = Other
VARIABLES:
cruise_id (text)
Receipt_Number (dimensionless)
Date_Reported (unitless)
station_id (text)
latitude (degrees_north)
lon (Longitude, decimal degrees)
Submitter_Identification (text)
Type (text)
Process (text)
Accession_Number (OS-xxxxx)
F_Modern (Unitless)
Fm_Error (Unitless)
Age (Radiocarbon years)
Age_Error (Radiocarbon years)
d13C (D13 C, per mille)
d13C_Source (D13 C Source, text)
D14C (D14 C, per mille)
DIC_Conc (mmol/kg)
DOC_Conc (um/kg)


[Surface Sedimentary Black Carbon Concentrations and Carbon Isotopes Values] - Surface Sedimentary Black Carbon Concentrations, Flux, and Carbon Isotopes Values from the R.V. Endeavor EN651 in the Equatorial Atlantic Ocean from March 2020 (Concentrations and source assessment of black carbon across tropical Atlantic air and sediment)

Surface sediments (0-1 cm) were obtained from the equatorial Atlantic Ocean and isolated for black carbon using the chemothermal oxidation at 375°C method (CTO 375). Multicores were taken aboard the R.V. Endeavor (EN651) from March 1st through March 15th, 2020, using a multi corer MC-800. Sediment samples were collected from 12 multicore stations along a west-to-east transect of the equatorial Atlantic centered on about 5˚N. Sediment deposition environments included the Amazon Submarine Fan, a series of sites across the Mid-Atlantic Ridge, and sites on the Sierra Leone Rise and adjacent Sierra Leone Basin. See Figure 1 in the EN651 cruise report (Lohmann 2020) for an illustration of coring site locations.

Background information taken from the EN651 cruise report (Lohmann 2020)

Black carbon (BC) is a highly graphitized incomplete combustion byproduct that could be a sink for fixed carbon, especially when deposited to pelagic sediments (Kuhlbusch 1998). There is a general assumption that rivers deliver most or all BC to the ocean (Coppola et al. 2018; Elmquist et al. 2008; Kuhlbusch 1998; Masiello and Druffel 2001; Mitra et al. 2014, 2002; Suman et al. 1997). Yet the effects and fluxes of BC are not well constrained in general circulation models. For example, few BC flux measurements are available in remote ocean sediments due to the expense and difficulty of obtaining samples. The formation of BC during incomplete combustion results in a fraction of carbon not being available for the biological pump and deep ocean respiration. Once deposited to the ocean, BC is buried in sediments and can account for significant fractions of the organic matter preserved in sediments. Hence, our results would contribute towards accounting for some of the ‘missing' terrestrial OC in sediments, as all BC is landmass derived (Hedges et al. 1997).

cdm_data_type = Other
VARIABLES:
Name (unitless)
Cruise_ID (unitless)
Site_ID (unitless)
Coring_Attempt (unitless)
Core_Letter (unitless)
Collection_Date (unitless)
... (13 more variables)


[Survival - pCO2 x DO effects on Menidia menidia] - Survival data from static and fluctuating pCO2 x dissolved oxygen (DO) experiments on Menidia menidia (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish)

Coastal ecosystems experience substantial natural fluctuations in pCO2 and dissolved oxygen (DO) conditions on diel, tidal, seasonal and interannual timescales. Rising carbon dioxide emissions and anthropogenic nutrient input are expected to increase these pCO2 and DO cycles in severity and duration of acidification and hypoxia. How coastal marine organisms respond to natural pCO2 \u00d7 DO variability and future climate change remains largely unknown. Here, we assess the impact of static and cycling pCO2 \u00d7 DO conditions of various magnitudes and frequencies on early life survival and growth of an important coastal forage fish, Menidia menidia. Static low DO conditions severely decreased embryo survival, larval survival, time to 50% hatch, size at hatch and post-larval growth rates. Static elevated pCO2 did not affect most response traits, however, a synergistic negative effect did occur on embryo survival under hypoxic conditions (3.0 mg L-1). Cycling pCO2 \u00d7 DO, however, reduced these negative effects of static conditions on all response traits with the magnitude of fluctuations influencing the extent of this reduction. This indicates that fluctuations in pCO2 and DO may benefit coastal organisms by providing periodic physiological refuge from stressful conditions, which could promote species adaptability to climate change.

cdm_data_type = Other
VARIABLES:
Experiment (unitless)
Tank (unitless)
Bucket (unitless)
Target_Temperature (degrees Celsius)
Cycling_pattern (unitless)
Target_pCO2_uatm (Target P CO2 Uatm, microatmospheres (uatm))
Target_DO_mgL (Target DO Mg L, milligrams per liter (mg L-1))
Embryo_survival (unitless (percent))
Larval_survival_to_15dph (unitless (percent))
Larval_survival_to_6dph (unitless (percent))


[Survival and size] - Survival, length, and growth responses of M. menidia offspring from different females exposed to contrasting CO2 environments. (Collaborative research: Understanding the effects of acidification and hypoxia within and across generations in a coastal marine fish)

Wild-caught M.\u00a0menidia\u00a0adults were spawned to test whether offspring
from different mothers differ in their average survival and size responses to
elevated CO2\u00a0conditions.\u00a0The experiment quantified three related
survival and three size traits for each replicate, female, and
CO2\u00a0treatment: embryo survival (fertilization to 1\u00a0dph), larval
survival (1 to 16\u00a0dph), and overall survival (fertilization to
16\u00a0dph); and size (SL) at hatch (1\u00a0dph), SL at 16\u00a0dph, and
larval growth rate\u00a0(GR = (SL16dph\u00a0\u2013 SL1dph)/15).

These data are\u00a0associated with the corresponding paper:

[Snyder, J.T.*, Murray, C.S.*, and Baumann, H. (2017) Potential for maternal
effects on offspring CO2-sensitivities in a coastal marine fish. Journal of
Experimental Marine Biology and Ecology (in
press).](\\https://doi.org/10.1016/j.jembe.2017.11.002\\)

Other datasets related to this paper:

[Fatty acid profiles of M. menidia females and their unfertilized
eggs.](\\https://www.bco-dmo.org/dataset/719379\\)

cdm_data_type = Other
VARIABLES:
Species (unitless)
Collection_site (unitless)
latitude (degrees_north)
longitude (degrees_east)
Collection_date (unitless)
Female (unitless)
Total_length (centimeters)
pH (Sea Water Ph Reported On Total Scale, NIST units)
... (8 more variables)


[Suspended particle total mercury and monomethylmercury in the California Current Ecosystem (CCE)] - Suspended particle total mercury and monomethylmercury in the California Current Ecosystem (CCE) determined from samples collected on R/V Roger Revelle cruise RR2105 (P2107) in July to August 2021 (California Current Ecosystem Long Term Ecological Research site)

This dataset includes concentrations of suspended particulate total mercury and monomethylmercury from 8 upwelling stations and 5 offshore stations (13 stations in total, 2-4 depths per station), during the 2021 CCE LTER Process Cruise (P2107), from July 17th to Aug 9th. Suspended particle samples (1 and 51 micrometers (µm)) were collected with a multiple-unit large-volume in situ filtration system. Sampling depths were from the surface (10 meters) to the deep ocean as deep as 1000 meters.

cdm_data_type = Other
VARIABLES:
Cruise_ID (unitless)
Cruise_Name (unitless)
Station_Name (unitless)
ISO_DateTime_PDT (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
Latitude (degrees_north)
longitude (degrees_east)
Cast_Number (unitless)
depth (Depth_m, m)
tHg_CONC_SSF_fM (femtomolar (fM))
tHg_CONC_SSF_FLAG (unitless)
tHg_CONC_LSF_fM (femtomolar (fM))
tHg_CONC_LSF_FLAG (unitless)
MMHg_CONC_SSF_fM (femtomolar (fM))
MMHg_CONC_SSF_FLAG (unitless)
MMHg_CONC_LSF_fM (femtomolar (fM))
MMHg_CONC_LSF_FLAG (unitless)
Carbon_CONC_SSF_ug_L (microgram per liter (ug/L))
Carbon_CONC_SSF_FLAG (unitless)
Carbon_CONC_LSF (microgram per liter (ug/L))
Carbon_CONC_LSF_FLAG (unitless)


[Suspended particulate organic matter composition] - Suspended particulate organic matter composition of three marsh ponds in PIE-LTER (Rowley, MA) from 2014. (Eutrophication Effects on Sediment Metabolism and Benthic Algal-bacterial Coupling: An Application of Novel Techniques in a LTER Estuary)

Suspended particulate organic matter composition of three high marsh ponds within PIE-LTER. Data were collected over 11 weeks in the summer and fall of 2014.

cdm_data_type = Other
VARIABLES:
season (unitless)
Tide (unitless)
week (unitless)
Pond (unitless)
TOC (percent)
mg_C_L (miligrams per liter)
mg_N_L (miligrams per liter)
d13C (D13 C, per mil)
TN (percent)
d15N (D15 N, per mill)


[Swimming Endurance] - Ontogeny of swimming endurance of larval Amphiprion percula, Elacatinus lori, and Elacatinus colini from Belize in 2015. (Collaborative Research: The Role of Larval Orientation Behavior in Determining Population Connectivity)

Recorded swimming duration of larval Amphiprion percula, Elacatinus lori, and Elacatinus colini measured throughout development from hatching through settlement.

cdm_data_type = Other
VARIABLES:
date (unitless)
location (unitless)
species (unitless)
batch_id (unitless)
dph (days post hatch)
stand_dph (percent)
speed (centimeters per second)
time_sec (seconds)
dist_cm (centimeters)
TL (milimeters)
SL (milimeters)
BD (milimeters)
PA (milimeters)


[Switch RNAseq] - Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study (Bacterial Taxa that Control Sulfur Flux from the Ocean to the Atmosphere)

Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study. This dataset contains the processed, QC'ed, normalized sequence data. The full raw data file is deposited in the NCBI BioProject database under accession PRJNA381627.

cdm_data_type = Other
VARIABLES:
Locus_Tag (unitless)
Description (unitless)
Day7_R1 (TPM (transcripts per million))
Day7_R2 (TPM (transcripts per million))
Day9_R1 (TPM (transcripts per million))
Day9_R2 (TPM (transcripts per million))
Day12_R1 (TPM (transcripts per million))
Day12_R2 (TPM (transcripts per million))
Day15_R1 (TPM (transcripts per million))
Day15_R2 (TPM (transcripts per million))
Day18_R1 (TPM (transcripts per million))
Day18_R2 (TPM (transcripts per million))
Day23_R1 (TPM (transcripts per million))
Day23_R2 (TPM (transcripts per million))
Day30_R1 (TPM (transcripts per million))
Day30_R2 (TPM (transcripts per million))
Day37_R1 (TPM (transcripts per million))
Day37_R2 (TPM (transcripts per million))


[Symbiodinium community composition] - Symbiodinium community composition for individual A. cervicornis from Elliot Key, Florida during 2014 and 2015 (EMUCoReS project) (RAPID: A hyper-thermal anomaly in the Florida Reef Tract: An opportunity to explore the mechanisms underpinning patterns of coral bleaching and disease)

Symbiodinium community composition for individual A. cervicornis from Elliot Key, Florida during 2014 and 2015 (EMUCoReS project)

cdm_data_type = Other
VARIABLES:
genet_clonalPopulation_ID (Genet Clonal Population ID, unitless)
ramet_individualColony_ID (Ramet Individual Colony ID, unitless)
visit (unitless)
bleaching (unitless)
disease (unitless)
mortality (unitless)


[Symbiodinium Fv/Fm over a temperature gradient] - Fv/Fm for cultured Clade A & B Symbiodinium with 2 treatments measured over a range of temperatures (Coevolution of scleractinian corals and their associated microorganisms)

Coral photosynthetic endosymbionts (Symbiodinium) are phylogenetically very diverse, yet the extent of inter- and intraspecific functional variation within clades remains largely underexplored. Understanding this variability will be critical for future research on climate change mediated responses. A properly functioning thylakoid membrane is essential for optimal photosynthetic performance both in free-living and in hospite conditions. Here we analyze the thylakoid membrane melting points of 13  Symbiodinium strains from species in Clades B and A, grown at both control (26 \u00b0C)  and high temperature (31 \u00b0C). We observed a broad range of responses to thermal stress regardless of taxonomic rank. Our results support and augment a growing body of literature demonstrating that functional differences among Symbiodinium spp. are as distinct at lower taxonomic levels (i.e. interspecific) as they are among major clades. These findings highlight the importance of assessing the variability of plastid traits across the Symbiodinium tree.

cdm_data_type = Other
VARIABLES:
Strain (unitless)
Species (unitless)
Treatment (unitless)
Replicate (unitless)
Temperature (degrees Celsius)
Fv_Fm (dimensionless)


[Symbiodinium genotype responses to Nitrogen] - Traits of five Symbiodinium genotypes measured at three different nitrogen levels (RUI: Collaborative Research: Genetic variation as a driver of host and symbiont response to increased temperature on coral reefs)

Replicates of each Symbiodinium genotype were grown in low (25mg/L), medium (75mg/L), or high (150mg/L) nitrogen environments, after which were measured physiological parameters, including the number of cells, quantum yield, variable fluorescence, and chlorophyll content.

cdm_data_type = Other
VARIABLES:
Genotype (unitless)
Ntreatment (unitless)
Growthrate (cells/day)
QY (unitless ratio)
Vfl (unitless)
Chla (Concentration Of Chlorophyll In Sea Water, Relative Fluorescence Units)
Chlapercell (Relative Fluorescence Units)
lncells (Ln(#cells))


[Symbiodinium genotype responses to temperature] - Traits of three Symbiodinium genotypes measured at ambient and elevated temperatures (RUI: Collaborative Research: Genetic variation as a driver of host and symbiont response to increased temperature on coral reefs)

Traits of three genotypes measured at ambient and elevated temperatures. Replicates of each Symbiodinium genotype were grown in ambient (26 degrees) and elevated (30 degrees) temperatures, after which were measured physiological parameters, including the number of cells, quantum yield, variable fluorescence, and chlorophyll content.

cdm_data_type = Other
VARIABLES:
Genotype (unitless)
Temp (Temperature, degrees Celsius)
Replicate (unitless)
NumberCells (Number Cells, number cells/milliliter (#/mL))
QY (unitless ratio)
Vfl (unitless)
Chla (Concentration Of Chlorophyll In Sea Water, Relative Fluorescence Units)
Chlapercell (Relative Fluorescence Units)


[Synechococcus accessions] - NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay, July 2017 (Dimensions: Collaborative Research: Genetic, functional and phylogenetic diversity determines marine phytoplankton community responses to changing temperature and nutrients)

NCBI accessions for raw genomic sequence data of 11 new isolates of marine Synechococcus from Naragansett Bay.

cdm_data_type = Other
VARIABLES:
Accession (unitless)
Sample_Name (unitless)
SPUID (unitless)
Organism (unitless)
Tax_ID (unitless)
Isolate (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)


[Synechococcus Batch Culture Sampling Data] - Synechococcus batch culture data (cell quotas and ratios (C,N,P), size, and diameter) from laboratory experiments in 2021 to 2022 with related isolates cultured across a range of temperatures (16-25C) (Collaborative Research: The stoichiometric trait distribution of the marine microbiome)

Diverse phytoplankton modulate the coupling between the ocean carbon and nutrient cycles through life-history traits such as cell size, elemental quotas, and ratios. Biodiversity is mostly considered at broad functional levels, but major phytoplankton lineages are themselves highly diverse. As an example, Synechococcus is found in nearly all ocean regions, and we demonstrate contains extensive intraspecific variation. Here, we grew four closely related Synechococcus isolates in serially transferred cultures across a range of temperatures (16-25°C) to quantify for the relative role of intraspecific trait variation vs. environmental change. We collected data at the time of sampling, after cultures grew for seven doublings or one month.   Experiments were conducted from September of 2021 to early 2022.

This dataset includes cell quotas (fmol) for carbon (QC), nitrogen (QN), and phosphorus (QP). It also includes N:P, C:N, and C:P stoichiometry, cell size, and cell diameter (µm) for each Synechococcus strain and clade under each thermal condition.

cdm_data_type = Other
VARIABLES:
Rep (unitless)
Temp (degrees Celsius (degC))
Strain (unitless)
Clade (unitless)
GR (Growth rate per day (d-1))
QN (femtomoles (fmol))
QP (femtomoles (fmol))
QC (femtomoles (fmol))
FSCH (unitless)
CN (unitless)
NP (unitless)
CP (unitless)
Cell_Diameter_um (micrometers (um))
Grams_N (grams (g))
Grams_P (grams (g))
... (10 more variables)


[Synechococcus DOP Displacement Experiment] - Laboratory-cultured Synechococcus (WH8102 and WH5701) MUF-P hydrolysis inhibition by dissolved organic phosphorus (DOP) from experiments between 2018-2023 (Collaborative Research: Assessing the role of compound-specific phosphorus hydrolase transformations in the marine phosphorus cycle)

The affinity of Synechococcus (WH8102 and WH5701) alkaline phosphatases for different DOP model substrates was examined in laboratory experiments through its ability to inhibit the hydrolysis of the fluorogenic substrate 4-methylumbelliferyl phosphate (MUF-P). These data were collected as part of a study of "Dissolved organic phosphorus bond-class utilization by Synechococcus" (Waggoner et al., 2024).

Study Abstract:
Dissolved organic phosphorus (DOP) contains compounds with phosphoester (P-O-C), phosphoanhydride (P-O-P), and phosphorus-carbon (P-C) bonds. Despite DOP's importance as a nutritional source for marine microorganisms, the bioavailability of each bond-class to the widespread cyanobacterium Synechococcus remains largely unknown. This study evaluates bond-class specific DOP utilization by cultures of an open ocean and a coastal ocean Synechococcus strain. Both strains exhibited comparable growth rates when provided phosphate, short-chain and long-chain polyphosphate (P-O-P), adenosine 5'-triphosphate (P-O-C and P-O-P), and glucose-6-phosphate (P-O-C) as the phosphorus source. However, growth rates on phosphomonoester adenosine 5'-monophosphate (P-O-C) and phosphodiester bis(4-methylumbelliferyl) phosphate (C-O-P-O-C) varied between strains, and neither strain grew on selected phosphonates. Consistent with the growth measurements, both strains preferentially hydrolyzed 3-polyphosphate, followed by adenosine 5'-triphosphate, and then adenosine 5'-monophosphate. The strains' exoproteome contained phosphorus hydrolases, which combined with enhanced cell-free hydrolysis of 3-polyphosphate and adenosine 5'-triphosphate under phosphate deficiency, suggests active mineralization of short-chain polyphosphate by Synechococcus' exoproteins. Synechococcus alkaline phosphatases presented broad substrate specificities, including activity towards short-chain polyphosphate, with varying affinities between the two strains. Collectively, these findings underscore the potentially significant role of compounds with phosphoanhydride bonds in Synechococcus phosphorus nutrition, thereby expanding our understanding of microbially-mediated DOP cycling in marine ecosystems.

cdm_data_type = Other
VARIABLES:
synechococcus_strain (unitless)
MUF_P_conc (micromoles per liter (umol L-1))
... (5 more variables)


[Synechococcus DOP Hydrolysis Experiment - cell counts and IVF] - In vivo fluorescence and flow cytometry cell counts from dissolved organic phosphorus (DOP) hydrolysis experiments with marine cyanobacterium Synechococcus laboratory cultures (WH8102 and WH5701) from 2018-2023 (Collaborative Research: Assessing the role of compound-specific phosphorus hydrolase transformations in the marine phosphorus cycle)

Marine cyanobacterium Synechococcus (WH8102 and WH5701) laboratory culture in vivo fluorescence and flow cytometry cell counts following growth in high and low phosphate media, as part of the DOP hydrolysis experiments in a study of "Dissolved organic phosphorus bond-class utilization by Synechococcus" (Waggoner et al. 2024).

Study Abstract:
Dissolved organic phosphorus (DOP) contains compounds with phosphoester (P-O-C), phosphoanhydride (P-O-P), and phosphorus-carbon (P-C) bonds. Despite DOP's importance as a nutritional source for marine microorganisms, the bioavailability of each bond-class to the widespread cyanobacterium Synechococcus remains largely unknown. This study evaluates bond-class specific DOP utilization by cultures of an open ocean and a coastal ocean Synechococcus strain. Both strains exhibited comparable growth rates when provided phosphate, short-chain and long-chain polyphosphate (P-O-P), adenosine 5'-triphosphate (P-O-C and P-O-P), and glucose-6-phosphate (P-O-C) as the phosphorus source. However, growth rates on phosphomonoester adenosine 5'-monophosphate (P-O-C) and phosphodiester bis(4-methylumbelliferyl) phosphate (C-O-P-O-C) varied between strains, and neither strain grew on selected phosphonates. Consistent with the growth measurements, both strains preferentially hydrolyzed 3-polyphosphate, followed by adenosine 5'-triphosphate, and then adenosine 5'-monophosphate. The strains' exoproteome contained phosphorus hydrolases, which combined with enhanced cell-free hydrolysis of 3-polyphosphate and adenosine 5'-triphosphate under phosphate deficiency, suggests active mineralization of short-chain polyphosphate by Synechococcus' exoproteins. Synechococcus alkaline phosphatases presented broad substrate specificities, including activity towards short-chain polyphosphate, with varying affinities between the two strains. Collectively, these findings underscore the potentially significant role of compounds with phosphoanhydride bonds in Synechococcus phosphorus nutrition, thereby expanding our understanding of microbially-mediated DOP cycling in marine ecosystems.

cdm_data_type = Other
VARIABLES:
synechococcus_strain (unitless)
time_day (days)
media_and_phosphate_level (unitless)
... (6 more variables)


[Synechococcus DOP Hydrolysis Experiment - hydrolysis rates] - Dissolved organic phosphorus (DOP) hydrolysis rates from marine cyanobacterium Synechococcus (WH8102 and WH5701) laboratory cultures from experiments between 2018-2023 (Collaborative Research: Assessing the role of compound-specific phosphorus hydrolase transformations in the marine phosphorus cycle)

Dissolved organic phosphorus (DOP) hydrolysis rates from marine cyanobacterium Synechococcus (WH8102 and WH5701) laboratory cultures.  These data were collected as part of a study of "Dissolved organic phosphorus bond-class utilization by Synechococcus" (Waggoner et al., submitted).

Study Abstract:
Dissolved organic phosphorus (DOP) contains compounds with phosphoester (P-O-C), phosphoanhydride (P-O-P), and phosphorus-carbon (P-C) bonds. Despite DOP's importance as a nutritional source for marine microorganisms, the bioavailability of each bond-class to the widespread cyanobacterium Synechococcus remains largely unknown. This study evaluates bond-class specific DOP utilization by cultures of an open ocean and a coastal ocean Synechococcus strain. Both strains exhibited comparable growth rates when provided phosphate, short-chain and long-chain polyphosphate (P-O-P), adenosine 5'-triphosphate (P-O-C and P-O-P), and glucose-6-phosphate (P-O-C) as the phosphorus source. However, growth rates on phosphomonoester adenosine 5'-monophosphate (P-O-C) and phosphodiester bis(4-methylumbelliferyl) phosphate (C-O-P-O-C) varied between strains, and neither strain grew on selected phosphonates. Consistent with the growth measurements, both strains preferentially hydrolyzed 3-polyphosphate, followed by adenosine 5'-triphosphate, and then adenosine 5'-monophosphate. The strains' exoproteome contained phosphorus hydrolases, which combined with enhanced cell-free hydrolysis of 3-polyphosphate and adenosine 5'-triphosphate under phosphate deficiency, suggests active mineralization of short-chain polyphosphate by Synechococcus' exoproteins. Synechococcus alkaline phosphatases presented broad substrate specificities, including activity towards short-chain polyphosphate, with varying affinities between the two strains. Collectively, these findings underscore the potentially significant role of compounds with phosphoanhydride bonds in Synechococcus phosphorus nutrition, thereby expanding our understanding of microbially-mediated DOP cycling in marine ecosystems.

cdm_data_type = Other
VARIABLES:
synechococcus_strain (unitless)
... (7 more variables)


[Synechococcus fluorescence emission spectra] - Fluorescence spectra for 3 strains of Synechococcus while increasing temperatures to detect the photosystem components disassociation temperature (Dimensions: Collaborative Research: Genetic, functional and phylogenetic diversity determines marine phytoplankton community responses to changing temperature and nutrients)

Fluorescence spectra from 600-700nm at 530nm excitation for 3 strains of Synechococcus while increasing temperatures to detect the photosystem components disassociation temperature.

cdm_data_type = Other
VARIABLES:
Temperature (degrees Celsius)
Em_nm (nanometers)
LA31_A (percent)
LA31_B (percent)
LA31_C (percent)
LA126_A (percent)
LA126_B (percent)
LA126_C (percent)
LA127_A (percent)
LA127_B (percent)
LA127_C (percent)


[Synechococcus Growth on DOP Experiments - IVF] - Laboratory-cultured Synechococcus (WH8102 and WH5701) growth (vivo fluorescence) on dissolved organic phosphorus (DOP) from experiments between 2018-2023 (Collaborative Research: Assessing the role of compound-specific phosphorus hydrolase transformations in the marine phosphorus cycle)

Laboratory culture Synechococcus (WH8102 and WH5701) growth on dissolved organic phosphorus (DOP). These data were collected as part of a study of "Dissolved organic Phosphorus bond-class utilization by Synechococcus" (Waggoner et al. 2024).

Study Abstract:
Dissolved organic phosphorus (DOP) contains compounds with phosphoester (P-O-C), phosphoanhydride (P-O-P), and phosphorus-carbon (P-C) bonds. Despite DOP's importance as a nutritional source for marine microorganisms, the bioavailability of each bond-class to the widespread cyanobacterium Synechococcus remains largely unknown. This study evaluates bond-class specific DOP utilization by cultures of an open ocean and a coastal ocean Synechococcus strain. Both strains exhibited comparable growth rates when provided phosphate, short-chain and long-chain polyphosphate (P-O-P), adenosine 5'-triphosphate (P-O-C and P-O-P), and glucose-6-phosphate (P-O-C) as the phosphorus source. However, growth rates on phosphomonoester adenosine 5'-monophosphate (P-O-C) and phosphodiester bis(4-methylumbelliferyl) phosphate (C-O-P-O-C) varied between strains, and neither strain grew on selected phosphonates. Consistent with the growth measurements, both strains preferentially hydrolyzed 3-polyphosphate, followed by adenosine 5'-triphosphate, and then adenosine 5'-monophosphate. The strains' exoproteome contained phosphorus hydrolases, which combined with enhanced cell-free hydrolysis of 3-polyphosphate and adenosine 5'-triphosphate under phosphate deficiency, suggests active mineralization of short-chain polyphosphate by Synechococcus' exoproteins. Synechococcus alkaline phosphatases presented broad substrate specificities, including activity towards short-chain polyphosphate, with varying affinities between the two strains. Collectively, these findings underscore the potentially significant role of compounds with phosphoanhydride bonds in Synechococcus phosphorus nutrition, thereby expanding our understanding of microbially-mediated DOP cycling in marine ecosystems.

cdm_data_type = Other
VARIABLES:
synechococcus_strain (unitless)
experiment_number (unitless)
time_day (days)
DOP_substrate (unitless)
in_vivo_fluorescence_trip1 (relative fluorescence units (RFU))
in_vivo_fluorescence_trip2 (relative fluorescence units (RFU))
in_vivo_fluorescence_trip3 (relative fluorescence units (RFU))


[Synechococcus growth rates] - Growth rates across temperatures for 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017 (Dimensions: Collaborative Research: Genetic, functional and phylogenetic diversity determines marine phytoplankton community responses to changing temperature and nutrients)

Growth rates across temperatures for 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017.

cdm_data_type = Other
VARIABLES:
Isolate (unitless)
Temp (Temperature, degrees Celsius)
growth_rate_mean (cells/day)
growth_rate_StDev (Growth Rate St Dev, cells/day)


[Synechococcus TPC parameters] - The thermal niche for each of 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017 (Dimensions: Collaborative Research: Genetic, functional and phylogenetic diversity determines marine phytoplankton community responses to changing temperature and nutrients)

The thermal niche, as calculated from the Thermal Performance Curve (TPC), for each of 11 new isolates of marine Synechococcus from Narragansett Bay, July 2017.

cdm_data_type = Other
VARIABLES:
Isolate (unitless)
topt (degrees Celsius)
tmin (Minimum Temperature, degrees Celsius)
tmax (Maximum Temperature, degrees Celsius)
rsqr (unitless)
width (degrees Celsius)


[Synechococcus_ETSP] - Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010 (Syne_ETSP project) (RAPID: Synechococcus diversity and Fe stress and the relationship to dissolved metals in the Eastern Tropical South Pacific)

Synechococcus counts determined by epifluorescent microscopy from samples collected on R/V Atlantis cruise AT15-61 in the Eastern Tropical South Pacific in 2010.

cdm_data_type = Other
VARIABLES:
cruise_id (text)
cruise_synonym (text)
sta (unitless)
date_local (unitless)
month_local (unitless)
day_local (unitless)
year (unitless)
longitude (degrees_east)
lon_360 (Longitude, degrees)
latitude (degrees_north)
depth (m)
cells_per_field (unitless)
vol_filt (mL)
area_filter (um^2)
fields_per_filter (unitless)
abundance (cells/mL)
abund_log (cells/mL)


[Synthesis Product for Ocean Time Series (SPOTS)] - Synthesis Product for Ocean Time Series (SPOTS) (EarthCube RCN for Marine Ecological Time Series (METS))

The presented time-series data synthesis pilot product includes data from 12 fixed ship-based time-series programs. The related stations represent unique marine environments within the Atlantic Ocean, Pacific Ocean, Mediterranean Sea, Nordic Seas, and Caribbean Sea. The focus of the pilot has been placed on biogeochemical essential ocean variables: dissolved oxygen, dissolved inorganic nutrients, inorganic carbon (pH, total alkalinity, dissolved inorganic carbon, and partial pressure of CO2), particulate matter, and dissolved organic carbon. The time-series used include a variety of temporal resolutions (monthly, seasonal, or irregular), time ranges (10 to 36 years), and bottom depths (80 to 6000 meters), with the oldest samples dating back to 1983 and the most recent one corresponding to 2021. Besides having been harmonized into the same format (semantics, ancillary data, units), the data were subjected to a qualitative assessment in which the applied methods were evaluated and categorized. Additional data-quality descriptors include precision and accuracy estimates. This data product pilot facilitates a variety of applications that benefit from the collective value of biogeochemical time-series observations and forms the basis for a sustained time-series living data product, complementing relevant products for the global interior ocean carbon data (GLobal Ocean Data Analysis Project), global surface ocean carbon data (Surface Ocean CO2 Atlas; SOCAT), and global interior and surface methane and nitrous oxide data (MarinE MethanE and NiTrous Oxide product).

cdm_data_type = Other
VARIABLES:
TimeSeriesSite (unitless)
CRUISE (unitless)
STNNBR (unitless)
CASTNO (unitless)
BTLNBR (unitless)
DATE (unitless)
TIME_UTC (unitless)
LATITUDE (degrees_north)
longitude (degrees_east)
CTDPRS (decibar (dbar))
SIGMA0 (kilogram per cubic meter (kg/m3))
... (83 more variables)