[Plocamium pigments] - Photosynthetic pigment concentrations in Plocamium cartilagineum, trials 3-8, 2014-2015 (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae)

Photosynthetic pigment concentrations in Plocamium cartilagineum, trials 3-8, 2014-2015.

cdm_data_type = Other
VARIABLES:
Trial (unitless)
Pot_ID (unitless)
Plant_ID (unitless)
Chl_a (Concentration Of Chlorophyll In Sea Water, micrograms/gram fresh weight)
PE (micrograms/gram fresh weight)
PC (micrograms/gram fresh weight)
APC (micrograms/gram fresh weight)
Total_PB (micrograms/gram fresh weight)
PB_ChlA_ratio (Concentration Of Chlorophyll In Sea Water, dimensionless)


[Plocamium: pH and temperature time-series] - Plocamium culture pot pH and temperature time-series at 10 minute sampling intervals from 2014-2015 (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae)

Plocamium culture pot pH and temperature time-series at 10 minute sampling intervals from 2014-2015.

cdm_data_type = Other
VARIABLES:
Trial (unitless)
date (unitless)
time2 (Time, unitless)
ISO_DateTime_Local (ISO Date Time Local, unitless)
pH_S1P1 (P H S1 P1, unitless)
T_S1P1 (T S1 P1, degrees Celsius)
pH_S1P2 (P H S1 P2, unitless)
T_S1P2 (T S1 P2, degrees Celsius)
pH_S2P4 (P H S2 P4, unitless)
T_S2P4 (T S2 P4, degrees Celsius)
pH_S3P7 (P H S3 P7, unitless)
T_S3P7 (T S3 P7, degrees Celsius)
pH_S2P6 (P H S2 P6, unitless)
T_S2P6 (T S2 P6, degrees Celsius)
pH_S3P8 (P H S3 P8, unitless)
T_S3P8 (T S3 P8, degrees Celsius)
pH_S1P3 (P H S1 P3, unitless)
T_S1P3 (T S1 P3, degrees Celsius)
pH_S2P5 (P H S2 P5, unitless)
T_S2P5 (T S2 P5, degrees Celsius)
pH_S3P9 (P H S3 P9, unitless)
T_S3P9 (T S3 P9, degrees Celsius)


[Plocamium: pH drift] - Carbonate chemistry over a time-course in pH drift experiments with Plocamium growth collected at Catalina Island, 2014-2015 (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae)

Carbonate chemistry over a time-course in pH drift experiments with Plocamium growth collected at Catalina Island, 2014-2015.

cdm_data_type = Other
VARIABLES:
trial (unitless)
sal_insitu (parts per thousand (ppt))
temp_insitu (degrees Celsius)
ID (unitless)
ALK (micromol/kilogram (umol/kg))
pH_t0 (P H T0, unitless)
pH_t2 (P H T2, unitless)
pH_t6 (P H T6, unitless)
pH_t20 (P H T20, unitless)
pH_t24 (P H T24, unitless)
pH_t30 (P H T30, unitless)
t0_DIC_x_1e06 (micromol/kilogram (umol/kg))
t2_DIC_x_1e06 (micromol/kilogram (umol/kg))
t6_DIC_x_1e06 (micromol/kilogram (umol/kg))
t20_DIC_x_1e06 (micromol/kilogram (umol/kg))
t24_DIC_x_1e06 (micromol/kilogram (umol/kg))
t30_DIC_x_1e06 (micromol/kilogram (umol/kg))
t0_CO2_x_1e06 (micromol/kilogram (umol/kg))
t2_CO2_x_1e06 (micromol/kilogram (umol/kg))
t6_CO2_x_1e06 (micromol/kilogram (umol/kg))
t20_CO2_x_1e06 (micromol/kilogram (umol/kg))
t24_CO2_x_1e06 (micromol/kilogram (umol/kg))
t30_CO2_x_1e06 (micromol/kilogram (umol/kg))
t0_HCO3_x_1e06 (micromol/kilogram (umol/kg))
t2_HCO3_x_1e06 (micromol/kilogram (umol/kg))
t6_HCO3_x_1e06 (micromol/kilogram (umol/kg))
... (9 more variables)


[Pmin strain feeding 2] - Data from an experiment that measured the occurrence of feeding among 8 Prorocentrum minimum strains on fluorescently labeled bacteria or the cryptophyte Teleaulax amphioxeia (Exploring the physiological and ecological basis of mixotrophy in marine food webs)

This dataset contains data from an experiment that measured the occurrence of feeding among 8 Prorocentrum minimum strains on fluorescently labeled bacteria or the cryptophyte Teleaulax amphioxeia.

cdm_data_type = Other
VARIABLES:
Prey (unitless)
Strain (unitless)
treatment (unitless)
rep (unitless)
cells (unitless)
cells_feeding (unitless)
pcnt_cells_feeding (unitless)
GFI (unitless)
GFI_per_cell (unitless)
OFI (unitless)
OFI_per_cell (unitless)


[Pmin strain feeding] - Data from an experiment that measured the occurrence of feeding among 4 Prorocentrum minimum strains on the cryptophyte Teleaulax amphoxeia (Exploring the physiological and ecological basis of mixotrophy in marine food webs)

This dataset contains data from an experiment that measured the occurrence of feeding among 4 Prorocentrum minimum strains on the cryptophyte Teleaulax amphoxeia.

cdm_data_type = Other
VARIABLES:
CULTURE (unitless)
time2 (TIME, minutes)
REP (unitless)
Pmin_COUNT (unitless)
OFI (unitless)
Pmin_OFI_COUNT (unitless)


[PO4_SiOH4] - Phosphate (PO4) and Silicate (SiOH4) concentrations from R/V Thomas G. Thompson and R/V Kilo Moana cruises TN277, KM1301, KM1312 in the Eastern North Pacific Ocean from 2012-2013 (POWOW project) (Seasonal and decadal changes in temperature drive Prochlorococcus ecotype distribution patterns)

Phosphate (PO4) and Silicate (SiOH4) concentrations from R/V Thomas G. Thompson and R/V Kilo Moana cruises TN277, KM1301, KM1312 in the Eastern North Pacific Ocean from 2012-2013 (POWOW project)

cdm_data_type = Other
VARIABLES:
cruise_name (text)
cast (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth_w (Depth, meters)
month_utc (mm (01 to 12))
day_utc (dd (01 to 31))
year (unitless)
time_utc (HHMM.mm)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
depth (m)
bot (unitless)
PO4 (Mass Concentration Of Phosphate In Sea Water, micromolar (uM))
SiOH4 (Si OH4, micromolar (uM))


[POC and PON - bulk seawater] - POC and PON from bulk seawater samples from RV/Atlantic cruise AT39-05, Feb-Mar 2018 (Collaborative Research:  Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean)

POC and PON from bulk seawater samples from RV/Atlantic cruise AT39-05, Feb-Mar 2018.

cdm_data_type = Other
VARIABLES:
Station (unitless)
Experiment_ID (unitless)
latitude (degrees_north)
longitude (degrees_east)
Sample_D (unitless)
Treatment (unitless)
POC (Particulate Organic Carbon, micromol/liter (umol/L))
PON (micromol/liter (umol/L))
POC_PON (unitless)


[POC and PON - Trichodesmium] - POC and PON from Trichodesmium colonies from RV/Atlantic cruise AT39-05, Feb-Mar 2018 (Collaborative Research:  Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean)

POC and PON from Trichodesmium colonies from RV/Atlantic cruise AT39-05, Feb-Mar 2018.

cdm_data_type = Other
VARIABLES:
Station (unitless)
Experiment_ID (unitless)
latitude (degrees_north)
longitude (degrees_east)
Sample_D (unitless)
Treatment (unitless)
POC (Particulate Organic Carbon, micromol/liter (umol/L))
PON (micromol/liter (umol/L))
POC_PON (unitless)


[POC PON isotopes] - Concentrations and stable isotope abundances of particulate organic carbon (POC) and particulate organic nitrogen (PON) from Niskin bottle samples taken on R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project) (Costa Rica Dome FLUx and Zinc Experiments)

Concentrations and stable isotope abundances of particulate organic carbon (POC) and particulate organic nitrogen (PON). Samples were collected on the MV1008 cruise in the Costa Rica Dome (CRD) region of the Eastern Tropical Pacific Ocean.

cdm_data_type = Other
VARIABLES:
event (integer)
cast (integer)
cycle (text)
date_local (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
niskin (integer)
POC (Particulate Organic Carbon, micrograms per liter (ug L-1))
PON (micrograms per liter (ug L-1))
d13C (D13 C, micrograms per liter (ug L-1))
d15N (D15 N, micrograms per liter (ug L-1))


[POC_PON] - Particulate Organic Carbon and Nitrogen from RVIB Nathaniel B. Palmer cruises NBP0103, NBP0104, NBP0202, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean)

Particulate Organic Carbon and Nitrogen from RVIB Nathaniel B. Palmer cruises NBP0103, NBP0104, NBP0202, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project)

cdm_data_type = Other
VARIABLES:
cruiseid
year
station_desc
station
cast
grid_line
grid_sta
yrday_gmt (YYY.Y)
latitude (degrees_north)
longitude (degrees_east)
event
bottle
depth_ (Depth, meters/centimeters)
POC (Particulate Organic Carbon, ug/l)
PON (ug/l)


[POM Concentrations] - Particulate organic matter (PON, POC, POP) concentrations collected on R/V Roger Revelle cruise RR1604 along the hydrographic line IO9 in the Eastern Indian Ocean from March to April 2016 (Collaborative Research: Regional variation of phytoplankton diversity and biogeochemical functioning in the subtropical Indian Ocean)

Particulate organic matter (PON, POC, POP) concentrations collected on R/V Roger Revelle cruise RR1604 along the hydrographic line IO9 in the Eastern Indian Ocean from March to April 2016.

cdm_data_type = Other
VARIABLES:
Sample (unitless)
Station (unitless)
latitude (degrees_north)
longitude (degrees_east)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
Volume (liters)
POC_Rep1 (micromolar (uM))
POC_Rep2 (micromolar (uM))
POC_Rep3 (micromolar (uM))
PON_Rep1 (micromolar (uM))
PON_Rep2 (micromolar (uM))
PON_Rep3 (micromolar (uM))
POP_Rep1 (nanomolar (nM))
POP_Rep2 (nanomolar (nM))
POP_Rep3 (nanomolar (nM))


[pooled random sites (PRS)] - Coral community structure at pooled random sites between Cabritte Horn and White Point in St. John before and after five hurricanes from 1988–2017 (RUI-LTREB Renewal: Three decades of coral reef community dynamics in St. John, USVI: 2014-2019)

These files contain data that support an analysis of the effects of two major hurricanes on coral reefs that have been extensively studied for more than three decades. Major tropical storms are destructive phenomena with large effects on the community dynamics of multiple biomes. On coral reefs, their impacts have been described for decades, leading to the expectation that future storms should have effects similar to those recorded in the past. This expectation relies on the assumption that storm intensities will remain unchanged, and the impacted coral reef communities are similar to those of the recent past; neither assumption is correct. These data support a study quantifying the effects of two category five hurricanes on the reefs of St. John, US Virgin Islands, where 31 y of time-series analyses reveal chronic coral mortality, increasing macroalgal abundance, and five major hurricanes that caused acute coral mortality. Contextualized by these trends, the effects of the most recent storms, Hurricanes Irma and Maria (September 2017), on coral cover were modest. While mean absolute coral cover declined 1\u20134% depending on site, these effects were not statistically discernable. Following decades of increasing abundance of macroalgae, this functional group responded to the  recent hurricanes with large increases in abundance on both absolute and relative scales. Decades of chronic mortality have changed the coral assemblages of St. John to create degraded communities that are resistant to severe storms.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Year (unitless)
Slide (unitless)
Timing (unitless)
Orbicella_annularis (percent)
Agaricia (percent)
Dendrogyra (percent)
Dichocoenia (percent)
Diploria_labrynthiformes (percent)
D_strigosa (percent)
Eusmilia_fastigiata (percent)
Favia_fragum (percent)
... (16 more variables)


[Pore Water Depth Profiles CL2015] - Sediment pore water and solid phase geochemical analyses from samples collected on R/V Savannah cruise SAV-15-18 at the Cape Lookout Continental Shelf and Slope during July 2015 (Source, Composition, and Stability of Soluble Iron Fluxing from Continental Margin Sediments)

Sediment pore water and solid phase geochemical analyses from samples collected on R/V Savannah cruise SAV-15-18 at the Cape Lookout Continental Shelf and Slope during July 2015.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Month (unitless)
Day (unitless)
Collection_Type (unitless)
Station (unitless)
longitude (degrees_east)
latitude (degrees_north)
sample_ID (unitless)
Sediment_depth (centimeters (cm))
SO4 (millimolar (mM))
sdSO4 (Sd SO4, millimolar (mM))
PO4 (Mass Concentration Of Phosphate In Sea Water, micromolar (uM))
sdPO4 (Sd PO4, micromolar (uM))
DIC (millimolar (mM))
sdDIC (Sd DIC, millimolar (mM))
date (unitless)


[Pore Water Depth Profiles CL2016] - Sediment pore water and solid phase geochemical analyses from samples collected on R/V Savannah cruise SAV-16-16 at the Cape Lookout Continental Shelf and Slope during May 2016 (Source, Composition, and Stability of Soluble Iron Fluxing from Continental Margin Sediments)

Sediment pore water and solid phase geochemical analyses from samples collected on R/V Savannah cruise SAV-16-16 at the Cape Lookout Continental Shelf and Slope during May 2016.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Month (unitless)
Day (unitless)
Collection_Type (unitless)
Station (unitless)
longitude (degrees_east)
latitude (degrees_north)
sample_ID (unitless)
Sediment_depth (centimeters (cm))
SO4 (millimolar (mM))
sdSO4 (Sd SO4, millimolar (mM))
PO4 (Mass Concentration Of Phosphate In Sea Water, micromolar (uM))
sdPO4 (Sd PO4, micromolar (uM))
DIC (millimolar (mM))
sdDIC (Sd DIC, millimolar (mM))
date (unitless)


[Pore Water Depth Profiles GoM2017] - Sediment pore water and solid phase geochemical analyses from samples collected on R/V Savannah cruise SAV-17-15 in the Gulf of Mexico during July and August 2017 (Source, Composition, and Stability of Soluble Iron Fluxing from Continental Margin Sediments)

Sediment pore water and solid phase geochemical analyses from samples collected on R/V Savannah cruise SAV-17-15 in the Gulf of Mexico during July and August 2017.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Month (unitless)
Day (unitless)
Collection_Type (unitless)
Station (unitless)
longitude (degrees_east)
latitude (degrees_north)
sample_ID (unitless)
Sediment_depth (centimeters (cm))
Fe_II (micromolar (uM))
sdFe_II (Sd Fe II, micromolar (uM))
Fed (micromolar (uM))
sdFed (Sd Fed, micromolar (uM))
Fe_III_d (micromolar (uM))
sdFe_III_d (Sd Fe III D, micromolar (uM))
DIC (millimolar (mM))
sdDIC (Sd DIC, millimolar (mM))
PO4 (Mass Concentration Of Phosphate In Sea Water, micromolar (uM))
sdPO4 (Sd PO4, micromolar (uM))
Mnd (micromolar (uM))
sdMnd (SD MND, micromolar (uM))
NH4 (Mole Concentration Of Ammonium In Sea Water, micromolar (uM))
sdNH4 (SD NH4, micromolar (uM))
NO2 (Mole Concentration Of Nitrite In Sea Water, micromolar (uM))
sdNO2 (Sd NO2, micromolar (uM))
Br (micromolar (uM))
... (10 more variables)


[Pore water geochemistry] - Pore water geochemistry from sediment cores collected on the R/V Nathaniel B. Palmer cruise NBP1601 to the West Antarctic continental shelf in January of 2016 (Organic Carbon Oxidation and Iron Remobilization by West Antarctic Shelf Sediments)

Pore water geochemistry from sediment cores collected on the R/V Nathaniel B. Palmer cruise NBP1601 to the West Antarctic continental shelf in January of 2016.

cdm_data_type = Other
VARIABLES:
St_ID (unitless)
Sa_ID (unitless)
Core (unitless)
Samp (unitless)
Depth (centimeters (cm))
Error (centimeters (cm))
pH (Sea Water Ph Reported On Total Scale, NBS scale)
Alk (millimolar (mM))
Fe (micromolar (uM))
Mn (micromolar (uM))
SO4 (millimolar (mM))
DOC (micromolar (uM))
NO3 (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))
NO2 (Mole Concentration Of Nitrite In Sea Water, micromolar (uM))
NH4 (Mole Concentration Of Ammonium In Sea Water, micromolar (uM))
PO4 (Mass Concentration Of Phosphate In Sea Water, micromolar (uM))
Si (Mass Concentration Of Silicate In Sea Water, micromolar (uM))
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
latitude (degrees_north)
longitude (degrees_east)


[Porewater Composition] - Biogeochemical and sediment characteristics of the Cinder Cones Methane seep site in the Ross Sea from November 2016 (EAGER: Elucidating the Antarctic Methane Cycle at the Cinder Cones Reducing Habitat)

These data are samples of pore water collected from a methane seep on Ross Island. This seep had been active for 5 years at the time of sampling and were collected from 10m water depth.

cdm_data_type = Other
VARIABLES:
Site_name (unitless)
Habitat (unitless)
Collection_Date (unitless)
Date (unitless)
latitude (Geo Loc Lat, degrees_north)
longitude (Geo Loc Long, degrees_east)
depth (Water Depth, m)
Replicate (unitless)
Sediment_Depth (centimeters (cm))
sampling_approach (unitless)
Fluoride (millimole (mmol))
Acetate (millimole (mmol))
Formate (millimole (mmol))
Chloride (millimole (mmol))
Nitrite (Mole Concentration Of Nitrite In Sea Water, millimole (mmol))
Bromide (millimole (mmol))
Sulfate (millimole (mmol))
Thiosulfate (millimole (mmol))
Lithium (millimole (mmol))
Sodium (millimole (mmol))
Ammonium (millimole (mmol))
Potassium (millimole (mmol))
Magnesium (millimole (mmol))
Calcium (millimole (mmol))
Sulfide (millimole (mmol))
Methane_porewater (nanomole per milliliter of porewater (nmol ml-1 porewater))
... (4 more variables)


[Porewater Nitrogen] - Porewater measurements of nitrate and nitrite concentration and N and O isotopic ratios (d15N and d18O) collected from sites 3 and 10 on the North Atlantic Long Core Cruise R/V Knorr KN223 from October to December 2014 (Determining the rates of denitrification, nitrification, and nitrogen fixation using natural abundance isotope profiles in North Atlantic sediments)

Porewater measurements of nitrate and nitrite concentration and N and O isotopic ratios (d15N and d18O) collected from sites 3 and 10 on the North Atlantic Long Core Cruise R/V Knorr KN223 from October to December 2014.

cdm_data_type = Other
VARIABLES:
Site_Number (unitless)
latitude (degrees_north)
longitude (degrees_east)
Depth_for_O2 (Depth, meters below seafloor (mbsf))
Oxygen (micromolar (uM))
Depth_for_Nitrate_and_Nitrate (Depth, meters below seafloor (mbsf))
Nitrate (Mole Concentration Of Nitrate In Sea Water, micromolar (uM))
Nitrite (Mole Concentration Of Nitrite In Sea Water, micromolar (uM))
Depth_for_Nitrite_isotopes (Depth, meters below seafloor (mbsf))
d15N_Nitrite (Mole Concentration Of Nitrite In Sea Water, per mil (‰))
d18O_Nitrite (Mole Concentration Of Nitrite In Sea Water, per mil (‰))
Depth_for_Nitrate_isotopes (Depth, meters below seafloor (mbsf))
d15N_Nitrate (Mole Concentration Of Nitrate In Sea Water, per mil (‰))
d18O_Nitrate (Mole Concentration Of Nitrate In Sea Water, per mil (‰))
Depth_for_Ammonium (Depth, meters below seafloor (mbsf))
Ammonium (Mole Concentration Of Ammonium In Sea Water, micromolar (uM))


[Porewater] - HS- and NH4+ porewater data from Little Lagoon, Alabama collected from 2012-2013. (Groundwater Discharge, Benthic Coupling and Microalgal Community Structure in a Shallow Coastal Lagoon)

HS- and NH4+ porewater data from Little Lagoon, Alabama collected from 2012-2013.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Date (unitless)
Julian_Date (unitless)
depth (m)
Mouth_HS (micromoles)
East_HS (micromoles)
West_HS (micromoles)
East_NH4 (Mole Concentration Of Ammonium In Sea Water, micromoles)
Mouth_NH4 (Mole Concentration Of Ammonium In Sea Water, micromoles)
West_NH4 (Mole Concentration Of Ammonium In Sea Water, micromoles)


[Post-hurricane Sponge Volume] - Sponge volume from repeated surveys in St. Thomas, U.S. Virgin Islands, before and after the 2017 hurricane season (RAPID: Collaborative Research: Sponge resilience in the face of multiple stressors)

Prior to the 2017 hurricanes, six shallow (8-15 meter depth) reef sites had been selected from the Virgin Islands Territorial Coral Reef Monitoring Program's (TCRMP) permanent monitoring sites to study variation in sponge communities - Black Point (BP), Coculus Rock (CR), and Magens Bay (MB), which are in embayments with heavily developed watersheds. Buck Island (BI) and Savana Island (SI) are located near undeveloped offshore cays. Botany Bay (BB) is a nearshore site in a bay with a low level of watershed development.

This dataset represents sponge volume from these repeated surveys before and after the 2017 hurricane season. We used three randomly selected transects out of the six permanently established 10-meter TCRMP transects at each site. The same three transects at each site were re-surveyed repeatedly in August 2016 (pre-hurricanes), December 2017 (10 weeks post-hurricanes), March 2018 (24 weeks post-hurricanes), November 2018 (61 weeks post-hurricanes), and July 2019 (93 weeks post-hurricanes).

cdm_data_type = Other
VARIABLES:
Year (unitless)
Site (unitless)
Latitude (degrees_north)
longitude (degrees_east)
quadrat (unitless)
sponge_volume (centimeters cubed per square meter (cm3/m2))


[Pre-experiment Urchin Barren Characterization] -  (CAREER: Energy fluxes and community stability in a dynamic, high-latitude kelp ecosystem)

Before experimental manipulation with caged Pycnopodia helianthoides presence, we characterized ambient density, gonad index, and size distributions of urchin communities ( Strongylocentrotus droebachiensis and Mesocentrotus franciscanus) in three replicate urchin barrens in Sitka Sound, AK (57°2'1"N 135°15'51"W) from February 11-20, 2023. Via SCUBA we conducted swath surveys where grazers were identified, counted, measured (test diameter), and randomly collected for gonad dissections. These surveys serve as a baseline to describe these sites as true barrens and to compare experimental results to.

cdm_data_type = Other
VARIABLES:
latitude (degrees_north)
longitude (Long, degrees_east)
Site (unitless)
time (Iso_datetime, seconds since 1970-01-01T00:00:00Z)
Date (unitless)
time_unitless (Time, unitless)
Diver (unitless)
Meter_marks (unitless)
Species (unitless)
Scientific_Name (unitless)
Count (individual)
Area_m2 (meters squared (m2))
Density_m2 (meters squared (m-2))
notes (unitless)


[Predation Trials] - Green crab size based predation trials conducted in laboratory mesocosms at Romberg Tiburon Center, Tiburon, CA in 2015 (RAPID: A rare opportunity to examine overcompensation resulting from intensive harvest of an introduced predator)

Green crab size based predation trials conducted in laboratory mesocosms at Romberg Tiburon Center, Tiburon, CA in 2015.

cdm_data_type = Other
VARIABLES:
trial_number (unitless)
time_point (unitless)
date (unitless)
tank_number (unitless)
tub_number (unitless)
predator_size (millimeters (mm))
origin (unitless)
time2 (Time, unitless)
prey_found (unitless)
prey_size_1 (millimeters (mm))
prey_size_2 (millimeters (mm))
prey_size_3 (millimeters (mm))
prey_size_4 (millimeters (mm))
prey_size_5 (millimeters (mm))
notes (unitless)


[Predator Induced and Non-Induced Eastern Oyster Shell Hardness] - Oyster shell hardness from study of eastern oysters (Crassostrea virginica) grown in a nursery with or without exposure to chemical cues from blue crabs (Collaborative Research: Keystone chemicals: Identifying general and universal molecules of fear)

This dataset is associated with the study "Eastern oysters alter inducible defense mechanism of shell strengthening with age". This study tested which mechanism, hardness or thickness, juvenile eastern oysters use to strengthen their shells in response to chemical cues from predators. Data was collected from eastern oysters, Crassostrea virginica, grown in a nursery in Dauphin Island, Alabama, USA with or without exposure to chemical cues from blue crabs, Callinectes sapidus. Two age groups (four-week and eight-week-old post-settlement) of juveniles were included in this study. Oyster shells were tested for shell hardness within both shell layers. Measurements include the Vickers hardness values of foliated and prismatic oyster shell layers, as well as the number and length of cracks resulting from hardness tests.

cdm_data_type = Other
VARIABLES:
Age_Group (unitless)
Layer (unitless)
ID (unitless)
Test_Num (unitless)
Before_Image (unitless)
After_Image (unitless)
Width (millimeters (mm))
D1 (micrometers (um))
D2 (micrometers (um))
Avg (micrometers (um))
avgD (millimeters (mm))
Force (kilograms (kg))
HV (?)
Crack_Length (?)
Num_cracks (unitless)


[Predator Induced and Non-Induced Eastern Oyster Shell Thickness] - Oyster shell thickness from study of eastern oysters (Crassostrea virginica) grown in a nursery with or without exposure to chemical cues from blue crabs (Collaborative Research: Keystone chemicals: Identifying general and universal molecules of fear)

This dataset is associated with the study "Eastern oysters alter inducible defense mechanism of shell strengthening with age". This study tested which mechanism, hardness or thickness, juvenile eastern oysters use to strengthen their shells in response to chemical cues from predators. Data were collected from eastern oysters, Crassostrea virginica, grown in a nursery in Dauphin Island, Alabama, USA with or without exposure to chemical cues from blue crabs, Callinectes sapidus. Two age groups (four-week and eight-week-old post-settlement) of juveniles were included in this study. Oyster shell thickness overall and within both shell layers were measured.

cdm_data_type = Other
VARIABLES:
Age_group (unitless)
ID (unitless)
Measurement_Num (unitless)
Grid_Num (unitless)
Overall_Angle (degrees)
Overall_Length (micrometers)
Foliated_Angle (degrees)
Foliated_Length (micrometers)
Prismatic_Angle (degrees)
Prismatic_Length (micrometers)


[predator surveys Eleuthera] - Size of predators observed during dedicated reef predator searches at Eleuthera, Bahamas in 2012 (Lionfish Invasion project) (Ecological Release and Resistance at Sea: Invasion of Atlantic Coral Reefs by Pacific Lionfish)

Size of predators observed during dedicated reef predator searches at Eleuthera, Bahamas in 2012.

cdm_data_type = Other
VARIABLES:
site (text)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
species (text)
species_code (code)
size (cm)


[predator surveys LSI] - Predators observed at reefs near Lee Stocking Island, Bahamas from 2009-2012 (Lionfish Invasion project) (Ecological Release and Resistance at Sea: Invasion of Atlantic Coral Reefs by Pacific Lionfish)

Predators observed at reefs near Lee Stocking Island, Bahamas from 2009-2012.

cdm_data_type = Other
VARIABLES:
site (text)
lat_site (decimal degrees)
lon_site (Longitude, decimal degrees)
location (text)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
survey (dimensionless)
ledge_tag (dimensionless)
species (text)
species_code (code)
length (cm)
hunting (Yes/No)


[Presence and absence of iron and light-related functional genes] - Presence and absence of iron and light-related functional genes collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula during 2014 (Polar Transcriptomes project) (Iron and Light Limitation in Ecologically Important Polar Diatoms: Comparative Transcriptomics and Development of Molecular Indicators)

Presence and absence of iron and light-related functional genes collected on the Gould (LMG1411) cruise in the Western Antarctica Peninsula during 2014 (Polar Transcriptomes project)

cdm_data_type = Other
VARIABLES:
species (unitless)
description (unitless)
protein (unitless)
RPKM (unitless)
evalue (unitless)
KO_num (unitless)
accession_link (unitless)


[Primary Production] - Primary productivity measurements from the Hawaii Ocean Time-Series (HOT) project from October 1988 to December 2019 at station ALOHA. ([Current] Hawaii Ocean Time-series (HOT): 2018-2023;  [Previous] Hawaii Ocean Time-series (HOT): Sustaining ocean ecosystem and climate observations in the North Pacific Subtropical Gyre)

Primary productivity measurements from the Hawaii Ocean Time-Series (HOT). Photosynthetic production of organic matter was measured by the 14C tracer method. All incubations from 1990 through mid-2000 were conducted in situ at eight depths (5, 25, 45, 75, 100, 125, 150 and 175m) over one daylight period using a free-drifting array as described by Winn et al. (1991). Starting HOT-119 (October 2000), we collected samples from only the upper six depths & modeled the lower two depths based on the monthly climatology. During 2015, all incubations were conducted in situ on a free floating, surface tethered array. Integrated carbon assimilation rates were calculated using the trapezoid rule with the shallowest value extended to 0 meters and the deepest extrapolated to a value of zero at 200 meters.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
longitude (degrees_east)
latitude (degrees_north)
PrimProd_filename (Prim Prod Filename, unitless)
Incubation_type (unitless)
Date (unitless)
Start_time (unitless)
start_date_time (unitless)
End_time (unitless)
time (End Date Time, seconds since 1970-01-01T00:00:00Z)
time2 (Time, hours)
depth (m)
Chl_a_mean (Concentration Of Chlorophyll In Sea Water, miligrams per cubic meter (mg/m3))
Chl_a_sd (miligrams per cubic meter (mg/m3))
Pheo_mean (miligrams per cubic meter (mg/m3))
Pheo_sd (miligrams per cubic meter (mg/m3))
Light_rep1 (miligrams Carbon per cubic meter (mg C/m3))
Light_rep2 (miligrams Carbon per cubic meter (mg C/m3))
Light_rep3 (miligrams Carbon per cubic meter (mg C/m3))
... (9 more variables)


[primary production] - Size-fractioned primary production rates from samples collected on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea Bermuda Atlantic Time-Series Station in 2011-2012 (Trophic BATS project) (Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea 	)

Size-fractioned primary production rates from samples collected on R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea Bermuda Atlantic Time-Series Station in 2011-2012.

cdm_data_type = Other
VARIABLES:
cruise_id (dimensionless)
date_gmt (unitless)
cast (dimensionless)
time_gmt (HHMM)
latitude (degrees_north)
longitude (degrees_east)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
depth (m)
sample (dimensionless)
size_fraction (micrometers)
Prod_NPP_light (mg C/m3/d)
Prod_NPP_light_dark (mg C/m3/d)


[Pro Syn Peuk CC Global Abundance Mean] - Prochlorococcus, Synechococcus, and picoeukaryotic phytoplankton yearly mean global abundance for four CMIP5 climate scenarios using an ensemble of five circulation models (Convergence: RAISE: Linking the adaptive dynamics of plankton with emergent global ocean biogeochemistry)

Prochlorococcus, Synechococcus, and picoeukaryotic phytoplankton yearly mean
global abundance for four CMIP5 climate scenarios using an ensemble of five
circulation models from 1900 to 2100.

cdm_data_type = Other
VARIABLES:
Years_for_Historic_scenario (unitless)
Years_for_scenarios_RCP2_6_RCP4_5_RCP8_5 (unitless)
Prochlorococccus_for_HISTORIC_scenario_GFDLESM2G_Model (Prochlorococccus For HISTORIC Scenario GFDLESM2 G Model, number of cells)
Prochlorococccus_for_HISTORIC_scenario_HadGEM2ES_Model (Prochlorococccus For HISTORIC Scenario Had GEM2 ES Model, number of cells)
Prochlorococccus_for_HISTORIC_scenario_IPSLCM5AMR_Model (Prochlorococccus For HISTORIC Scenario IPSLCM5 AMR Model, number of cells)
Prochlorococccus_for_HISTORIC_scenario_MPIESMLR_Model (number of cells)
Prochlorococccus_for_HISTORIC_scenario_NorESM1ME_Model (Prochlorococccus For HISTORIC Scenario Nor ESM1 ME Model, number of cells)
Prochlorococccus_for_RCP2_6_scenario_GFDLESM2G_Model (Prochlorococccus For RCP2 6 Scenario GFDLESM2 G Model, number of cells)
Prochlorococccus_for_RCP2_6_scenario_HadGEM2ES_Model (Prochlorococccus For RCP2 6 Scenario Had GEM2 ES Model, number of cells)
Prochlorococccus_for_RCP2_6_scenario_IPSLCM5AMR_Model (Prochlorococccus For RCP2 6 Scenario IPSLCM5 AMR Model, number of cells)
Prochlorococccus_for_RCP2_6_scenario_MPIESMLR_Model (number of cells)
Prochlorococccus_for_RCP2_6_scenario_NorESM1ME_Model (Prochlorococccus For RCP2 6 Scenario Nor ESM1 ME Model, number of cells)
Prochlorococccus_for_RCP4_5_scenario_GFDLESM2G_Model (Prochlorococccus For RCP4 5 Scenario GFDLESM2 G Model, number of cells)
Prochlorococccus_for_RCP4_5_scenario_HadGEM2ES_Model (Prochlorococccus For RCP4 5 Scenario Had GEM2 ES Model, number of cells)
Prochlorococccus_for_RCP4_5_scenario_IPSLCM5AMR_Model (Prochlorococccus For RCP4 5 Scenario IPSLCM5 AMR Model, number of cells)
Prochlorococccus_for_RCP4_5_scenario_MPIESMLR_Model (number of cells)
Prochlorococccus_for_RCP4_5_scenario_NorESM1ME_Model (Prochlorococccus For RCP4 5 Scenario Nor ESM1 ME Model, number of cells)
Prochlorococccus_for_RCP8_5_scenario_GFDLESM2G_Model (Prochlorococccus For RCP8 5 Scenario GFDLESM2 G Model, number of cells)
Prochlorococccus_for_RCP8_5_scenario_HadGEM2ES_Model (Prochlorococccus For RCP8 5 Scenario Had GEM2 ES Model, number of cells)
Prochlorococccus_for_RCP8_5_scenario_IPSLCM5AMR_Model (Prochlorococccus For RCP8 5 Scenario IPSLCM5 AMR Model, number of cells)
Prochlorococccus_for_RCP8_5_scenario_MPIESMLR_Model (number of cells)
Prochlorococccus_for_RCP8_5_scenario_NorESM1ME_Model (Prochlorococccus For RCP8 5 Scenario Nor ESM1 ME Model, number of cells)
Synechococcus_for_HISTORIC_scenario_GFDLESM2G_Model (Synechococcus For HISTORIC Scenario GFDLESM2 G Model, number of cells)
Synechococcus_for_HISTORIC_scenario_HadGEM2ES_Model (Synechococcus For HISTORIC Scenario Had GEM2 ES Model, number of cells)
Synechococcus_for_HISTORIC_scenario_IPSLCM5AMR_Model (Synechococcus For HISTORIC Scenario IPSLCM5 AMR Model, number of cells)
... (37 more variables)


[Pro Syn Peuk CC Global Abundance Std] - Prochlorococcus, Synechococcus, and picoeukaryotic phytoplankton yearly standard deviation from mean global abundance estimated for four CMIP5 climate scenarios using an ensemble of five circulation models (Convergence: RAISE: Linking the adaptive dynamics of plankton with emergent global ocean biogeochemistry)

Prochlorococcus, Synechococcus,\u00a0and picoeukaryotic phytoplankton yearly
standard deviation from mean global abundance estimated for four CMIP5 climate
scenarios using an ensemble of five circulation models from 1900 to 2100.

cdm_data_type = Other
VARIABLES:
Years_for_Historic_scenario (unitless)
Years_for_scenarios_RCP2_6_RCP4_5_RCP8_5 (unitless)
Prochlorococccus_for_HISTORIC_scenario_GFDLESM2G_Model (Prochlorococccus For HISTORIC Scenario GFDLESM2 G Model, number of cells)
Prochlorococccus_for_HISTORIC_scenario_HadGEM2ES_Model (Prochlorococccus For HISTORIC Scenario Had GEM2 ES Model, number of cells)
Prochlorococccus_for_HISTORIC_scenario_IPSLCM5AMR_Model (Prochlorococccus For HISTORIC Scenario IPSLCM5 AMR Model, number of cells)
Prochlorococccus_for_HISTORIC_scenario_MPIESMLR_Model (number of cells)
Prochlorococccus_for_HISTORIC_scenario_NorESM1ME_Model (Prochlorococccus For HISTORIC Scenario Nor ESM1 ME Model, number of cells)
Prochlorococccus_for_RCP2_6_scenario_GFDLESM2G_Model (Prochlorococccus For RCP2 6 Scenario GFDLESM2 G Model, number of cells)
Prochlorococccus_for_RCP2_6_scenario_HadGEM2ES_Model (Prochlorococccus For RCP2 6 Scenario Had GEM2 ES Model, number of cells)
Prochlorococccus_for_RCP2_6_scenario_IPSLCM5AMR_Model (Prochlorococccus For RCP2 6 Scenario IPSLCM5 AMR Model, number of cells)
Prochlorococccus_for_RCP2_6_scenario_MPIESMLR_Model (number of cells)
Prochlorococccus_for_RCP2_6_scenario_NorESM1ME_Model (Prochlorococccus For RCP2 6 Scenario Nor ESM1 ME Model, number of cells)
Prochlorococccus_for_RCP4_5_scenario_GFDLESM2G_Model (Prochlorococccus For RCP4 5 Scenario GFDLESM2 G Model, number of cells)
Prochlorococccus_for_RCP4_5_scenario_HadGEM2ES_Model (Prochlorococccus For RCP4 5 Scenario Had GEM2 ES Model, number of cells)
Prochlorococccus_for_RCP4_5_scenario_IPSLCM5AMR_Model (Prochlorococccus For RCP4 5 Scenario IPSLCM5 AMR Model, number of cells)
Prochlorococccus_for_RCP4_5_scenario_MPIESMLR_Model (number of cells)
Prochlorococccus_for_RCP4_5_scenario_NorESM1ME_Model (Prochlorococccus For RCP4 5 Scenario Nor ESM1 ME Model, number of cells)
Prochlorococccus_for_RCP8_5_scenario_GFDLESM2G_Model (Prochlorococccus For RCP8 5 Scenario GFDLESM2 G Model, number of cells)
Prochlorococccus_for_RCP8_5_scenario_HadGEM2ES_Model (Prochlorococccus For RCP8 5 Scenario Had GEM2 ES Model, number of cells)
Prochlorococccus_for_RCP8_5_scenario_IPSLCM5AMR_Model (Prochlorococccus For RCP8 5 Scenario IPSLCM5 AMR Model, number of cells)
Prochlorococccus_for_RCP8_5_scenario_MPIESMLR_Model (number of cells)
Prochlorococccus_for_RCP8_5_scenario_NorESM1ME_Model (Prochlorococccus For RCP8 5 Scenario Nor ESM1 ME Model, number of cells)
Synechococcus_for_HISTORIC_scenario_GFDLESM2G_Model (Synechococcus For HISTORIC Scenario GFDLESM2 G Model, number of cells)
Synechococcus_for_HISTORIC_scenario_HadGEM2ES_Model (Synechococcus For HISTORIC Scenario Had GEM2 ES Model, number of cells)
Synechococcus_for_HISTORIC_scenario_IPSLCM5AMR_Model (Synechococcus For HISTORIC Scenario IPSLCM5 AMR Model, number of cells)
... (37 more variables)


[Pro Syn Peuk CC Surface] - Prochlorococcus, Synechococcus, and picoeukaryotic phytoplankton for four future climatic scenarios and five Earth System Models (cell/ml) in a global 1x1 grid for the ocean surface (50m) (Convergence: RAISE: Linking the adaptive dynamics of plankton with emergent global ocean biogeochemistry)

Prochlorococcus, Synechococcus, and picoeukaryotic phytoplankton for four
future climatic scenarios and five Earth System Models (cell/ml) in a global
1\u00bax1\u00ba-grid for the ocean surface (50m).

cdm_data_type = Other
VARIABLES:
latitude (degrees_north)
longitude (degrees_east)
Prochlorococccus_for_HISTORIC_scenario_GFDLESM2G_Model (Prochlorococccus For HISTORIC Scenario GFDLESM2 G Model, cells per milliliter (cells/mL))
Prochlorococccus_for_HISTORIC_scenario_HadGEM2ES_Model (Prochlorococccus For HISTORIC Scenario Had GEM2 ES Model, cells/mL)
Prochlorococccus_for_HISTORIC_scenario_IPSLCM5AMR_Model (Prochlorococccus For HISTORIC Scenario IPSLCM5 AMR Model, cells/mL)
Prochlorococccus_for_HISTORIC_scenario_MPIESMLR_Model (cells/mL)
Prochlorococccus_for_HISTORIC_scenario_NorESM1ME_Model (Prochlorococccus For HISTORIC Scenario Nor ESM1 ME Model, cells/mL)
Prochlorococccus_for_RCP2_6_scenario_GFDLESM2G_Model (Prochlorococccus For RCP2 6 Scenario GFDLESM2 G Model, cells/mL)
Prochlorococccus_for_RCP2_6_scenario_HadGEM2ES_Model (Prochlorococccus For RCP2 6 Scenario Had GEM2 ES Model, cells/mL)
Prochlorococccus_for_RCP2_6_scenario_IPSLCM5AMR_Model (Prochlorococccus For RCP2 6 Scenario IPSLCM5 AMR Model, cells/mL)
Prochlorococccus_for_RCP2_6_scenario_MPIESMLR_Model (cells/mL)
Prochlorococccus_for_RCP2_6_scenario_NorESM1ME_Model (Prochlorococccus For RCP2 6 Scenario Nor ESM1 ME Model, cells/mL)
Prochlorococccus_for_RCP4_5_scenario_GFDLESM2G_Model (Prochlorococccus For RCP4 5 Scenario GFDLESM2 G Model, cells/mL)
Prochlorococccus_for_RCP4_5_scenario_HadGEM2ES_Model (Prochlorococccus For RCP4 5 Scenario Had GEM2 ES Model, cells/mL)
Prochlorococccus_for_RCP4_5_scenario_IPSLCM5AMR_Model (Prochlorococccus For RCP4 5 Scenario IPSLCM5 AMR Model, cells/mL)
Prochlorococccus_for_RCP4_5_scenario_MPIESMLR_Model (cells/mL)
Prochlorococccus_for_RCP4_5_scenario_NorESM1ME_Model (Prochlorococccus For RCP4 5 Scenario Nor ESM1 ME Model, cells/mL)
Prochlorococccus_for_RCP8_5_scenario_GFDLESM2G_Model (Prochlorococccus For RCP8 5 Scenario GFDLESM2 G Model, cells/mL)
Prochlorococccus_for_RCP8_5_scenario_HadGEM2ES_Model (Prochlorococccus For RCP8 5 Scenario Had GEM2 ES Model, cells/mL)
Prochlorococccus_for_RCP8_5_scenario_IPSLCM5AMR_Model (Prochlorococccus For RCP8 5 Scenario IPSLCM5 AMR Model, cells/mL)
Prochlorococccus_for_RCP8_5_scenario_MPIESMLR_Model (cells/mL)
Prochlorococccus_for_RCP8_5_scenario_NorESM1ME_Model (Prochlorococccus For RCP8 5 Scenario Nor ESM1 ME Model, cells/mL)
Synechococcus_for_HISTORIC_scenario_GFDLESM2G_Model (Synechococcus For HISTORIC Scenario GFDLESM2 G Model, cells/mL)
Synechococcus_for_HISTORIC_scenario_HadGEM2ES_Model (Synechococcus For HISTORIC Scenario Had GEM2 ES Model, cells/mL)
Synechococcus_for_HISTORIC_scenario_IPSLCM5AMR_Model (Synechococcus For HISTORIC Scenario IPSLCM5 AMR Model, cells/mL)
... (37 more variables)


[Prochlorococcus in situ cell cycle phases] - Prochlorococcus in situ cell cycle phases fractions from RV Cape Hatteras cruises CH0409 and CH0510 in the Western Sargasso Sea in 2009 and 2010. (Top-Down Regulation of Picophytoplankton in the Sargasso Sea: Application of a Reciprocal Transplant / Dilution Approach)

Prochlorococcus in situ cell cycle phases fractions from RV Cape Hatteras cruises CH0409 and CH0510 in the Western Sargasso Sea in 2009 and 2010.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Wx (unitless)
depth (m)
date_UTC (unitless)
time_UTC (unitless)
longitude (degrees_east)
latitude (degrees_north)
G1_pc (percent)
S_pc (percent)
G2_pc (percent)
G1G2_CV (G1 G2 CV, percent)
G2G1Ratio (G2 G1 Ratio, unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Prochlorococcus in situ growth rates] - Prochlorococcus in situ growth rates from cell cycle analysis from RV Cape Hatteras cruises CH0409 and CH0510 in the Western Sargasso Sea in 2009 and 2010. (Top-Down Regulation of Picophytoplankton in the Sargasso Sea: Application of a Reciprocal Transplant / Dilution Approach)

Prochlorococcus in situ growth rates from cell cycle analysis from RV Cape Hatteras cruises CH0409 and CH0510 in the Western Sargasso Sea in 2009 and 2010.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Wx (unitless)
depth (m)
date_start_UTC (unitless)
time_start_UTC (unitless)
date_end_UTC (unitless)
time_end_UTC (unitless)
latitude (degrees_north)
lat_max (Latitude, decimal degrees)
longitude (degrees_east)
lon_max (Longitude, decimal degrees)
Td (days)
pro_gr_cc (day -1)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Prochlorococcus_narB] - The  abundance of Prochlorococcus cells containing the nitrate reductase gene (narB) at the HOT and BATS sites in the Pacific and Atlantic Oceans between October 2005 and January 2008 (Nitrate Assimilation and the Ecology of Prochlorococcus: Features and Implications of Intraspecific Diversity in a Model Marine Phototroph)

Two year time series of the abundance of Prochlorococcus cells containing the
nitrate reductase gene (narB) at the HOT and BATS sites in the Pacific and
Atlantic Oceans. The goal was to collect long-term, high-resolution data on
the temporal and spatial variability of Prochlorococcus narB genotypes
belonging to the HLII and LLI clades. The abundance of Prochlorococcus cells
containing narB for each of these clades was determined by quantitative PCR at
12 depths every month from October 2005 to December 2007 at two locations:
BATS location (5 nautical mile radius around 31 40'N, 64 10'W) and HOT Station
ALOHA (5 nautical mile radius around 22 45'N, 158 00' W). These field samples
are a subset of those utilized in the \Prochlorococcus HOT/BATS\ dataset
([https://www.bco-dmo.org/dataset/3381](\\http://www.bco-
dmo.org/dataset/3381\\)).

These data are reported and described in:

Berube, P. M., Coe, A., Roggensack, S. E., & Chisholm, S. W. (2015). Temporal
dynamics of Prochlorococcuscells with the potential for nitrate assimilation
in the subtropical Atlantic and Pacific oceans. Limnology and Oceanography,
61(2), 482\u2013495. doi:10.1002/lno.10226

cdm_data_type = Other
VARIABLES:
gene (text)
site (text)
latitude (degrees_north)
longitude (degrees_east)
cruiseid (numeric)
year (unitless)
month (mm)
day (dd)
date (mm/dd/yy)
... (7 more variables)


[production vs. irradiance] - Production vs Irradiance data from RVIB Nathaniel B. Palmer cruise NBP0103 in the Southern Ocean in 2001 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean)

Production vs Irradiance data from RVIB Nathaniel B. Palmer cruise NBP0103 in the Southern Ocean in 2001 (SOGLOBEC project)

cdm_data_type = Other
VARIABLES:
cruiseid
year
station_desc
station
grid_line
grid_sta
yrday_gmt (YYY.Y)
latitude (degrees_north)
longitude (degrees_east)
event
cast
bottle
depth (m)
diff_from_8C (Diff From 8 C, degrees C)
replicate
alpha ((mgC/chla/h)/(uE/m2/s))
beta ((mgC/chla/h)/(uE/m2/s))
Ik ((uE/m2/s))
Pmax ((mgC/chla/h))


[Productivity model CO2 diffusion] - Predictions of photosynthesis and carbon use for diffusive uptake under light, temperature and pCO2 using a productivity model, 2014-2015 (Seaweed OA Resilience project) (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae)

This dataset represents calculations from a model of photosynthesis by diffusive uptake of only CO2 given expected abundance of carbonate chemistry parameters in ocean water of known temperature salinity and depth.

cdm_data_type = Other
VARIABLES:
Light (?)
pH (Sea Water Ph Reported On Total Scale, unitless)
Temp (Temperature, degrees Celsius)
pCO2 (P CO2, micro-atmospheres  (µatm))
HCO3 (micromoles/kilogram (µmol/kg))
CO3 (micromoles/kilogram (µmol/kg))
CO2 (micromoles/kilogram (µmol/kg))
DCO2 (CP2/meter^2/second (m-2 . s-1))
eb_a (unitless)
HCO3_CO3_frac (unitless)
d13C_CO2_SW (D13 C CO2 SW, parts per thousand (ppt))
alpha_org (unitless (a ratio of rate constants))
d13C (D13 C, parts per thousand (ppt))
D (parts per thousand (ppt))
K_half_sat (moles/meter^3 (mol . m-3))
PS (Surface Pressure Variation, micromoles C-fixed/meter^2/second)


[Profile data from WireWalker] - Profile data from WireWalker deployments at Mission Beach, California in 2016 at a 50m depth (Quantifying plankton dynamics in the internal tide using swarms of buoyancy-controlled robots)

Profile data from WireWalker deployments at Mission Beach, California in 2016 at a 50m depth.

cdm_data_type = Other
VARIABLES:
dnum (unitless)
date (unitless)
time2 (Time, unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
depth (m)
mask (unitless)
DO (percent (%))
B (counts)
chl (counts)
phyco (counts)
C (millisiemens per centimeter (mS/cm))
T (degrees Celsius)
P (decibars (dbar))
S (Practical Salinity Units (PSU))
rho (kilograms per meter cubed (kg/m3))
n2 (per seconds squared (s-2))
dPt (D PT, decibars per second (dbar/s))


[Profile data] - Float profile data collected during surface ascents in the Sargasso Sea from 2013-2014. (Rapid, Autonomous Particle Flux Observations in the Oligotrophic Ocean)

Optical proxy measurements of sinking particle flux and water-column bio-optical profiles were obtained from profiling floats in the Sargasso Sea to expand the number of particle flux observations in the critical and under-sampled \u201ctwilight zone\u201d. Particulate organic carbon flux derived from float-based optical sediment trap measurements was validated against fluxes measured directly with co-deployed, drifting neutrally-buoyant, sediment traps during a series of five short cruises before floats were deployed for approximately one year. The data returned by the floats comprise quantitative particle flux observations made at high-enough temporal resolution to interpret in the context of short-term, upper-ocean production events.

cdm_data_type = Other
VARIABLES:
deployment (unitless)
float_id (unitless)
prof_num (unitless)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
time2 (Time, unitless)
pres (Pressure, dbar)
temp (Temperature, Celsius)
sal (PSU)
optode_therm_v (volts)
optode_temp (Celsius)
oxy_phase (usec)
oxygen (umol/kg)
oxygen_cal (umol/kg)
chl (ug/L)
chl_corr (ug/L)
chl_cal (ug/L)
bbp700 (m -1)
bbp700_corr (m -1)
... (6 more variables)


[Profile pO2 Data] - SOS-Argo floats: ocean profile pO2 data acquired in different ocean basins between May 2012 and July 2023 (The Biological Pump in the Eastern Equatorial Pacific: in situ measurements of Oxygen and Nitrate)

This dataset contains data from Argo floats deployed by the Emerson group at the University of Washington between May 2012 and July 2023.

The name SOS-Argo stands for “Special Oxygen Sensor Argo” Floats.  These floats have standard Argo sensors for hydrostatic pressure, temperature, and salinity in addition to an Aanderaa oxygen sensor  (optode) installed on a 61 cm stalk above the end cap of the float.  The tall stalk allows the float to make atmospheric pO2 measurements uncontaminated by surface waters while the float is at the surface during data transfer to shore. The atmospheric pO2 data are used for in situ calibration of the O2 sensor against atmospheric pO2.

cdm_data_type = Other
VARIABLES:
Float (unitless)
Float_Profile (unitless)
Matlab_Time (unitless)
Excel_Time (unitless)
longitude (degrees_east)
Latitude (degrees_north)
Pressure (decibars)
Temperature (degrees Celsius (C))
Salinity (PSS-78)
O2_tphase (degrees)
O2_temp (degrees Celsius (C))
HumanReadable_Matlab (unitless)
O2_optode (atmospheres (atm))


[Profiling float location information] - Profiling float surface dates, times and locations from the Sargasso Sea from 2013 to 2014. (Rapid, Autonomous Particle Flux Observations in the Oligotrophic Ocean)

Optical proxy measurements of sinking particle flux and water-column bio-optical profiles were obtained from profiling floats in the Sargasso Sea to expand the number of particle flux observations in the critical and under-sampled \u201ctwilight zone\u201d.  A typical float cycle consisted of the descent to the target park depth, a park phase at the target depth which cycled among depths ranging 150-1000 m, a descent to 1000 m, an ascent to the surface during which measurements are made, and a surface telemetry phase, during which a GPS fix is obtained. Dates, times, and locations obtained during the surface telemetry phase are provided.

cdm_data_type = Other
VARIABLES:
deployment (unitless)
date (unitless)
time2 (Time, unitless)
latitude (degrees_north)
longitude (degrees_east)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Projected changes in habitat suitability] - Projected changes in habitat suitability for 33 marine species on the Northeast US shelf based on species distribution models fit to bottom trawl survey data from the NOAA Northeast Fisheries Science Center (Adaptations of fish and fishing communities to rapid climate change)

Projected changes in habitat suitability for 33 marine species on the Northeast US shelf. Changes in habitat suitability are calculated based on species distribution models fit to bottom trawl survey data from the NOAA Northeast Fisheries Science Center. Positive values indicate an increase in habitat suitability by 2040-2050 relative to historical (1963-2005). The spatial resolution of projections is 0.25 x 0.25 degrees.

cdm_data_type = Other
VARIABLES:
brosme_brosme (unitless)
centropristis_striata (unitless)
gadus_morhua (unitless)
glyptocephalus_cynoglossus (unitless)
hippoglossoides_platessoides (unitless)
hippoglossus_hippoglossus (unitless)
leucoraja_ocellata (unitless)
limanda_ferruginea (unitless)
lophius_americanus (unitless)
zoarces_americanus (unitless)
melanogrammus_aeglefinus (unitless)
merluccius_albidus (unitless)
merluccius_bilinearis (unitless)
paralichthys_dentatus (unitless)
peprilus_triacanthus (unitless)
pollachius_virens (unitless)
pseudopleuronectes_americanus (unitless)
scomber_scombrus (unitless)
scophthalmus_aquosus (unitless)
sebastes_fasciatus (unitless)
squalus_acanthias (unitless)
stenotomus_chrysops (unitless)
urophycis_chuss (unitless)
... (12 more variables)


[Projected species probability of occupancy and abundance under ocean warming] - Predicted probability of occupancy and abundance under a doubling of carbon dioxide using simulations from GFDL CM2.6 (Adaptations of fish and fishing communities to rapid climate change)

Predicted probability of occupancy and abundance under a doubling of carbon dioxide using simulations from GFDL CM2.6. These data were published in Selden (2018).

cdm_data_type = Other
VARIABLES:
spp (unitless)
longitude (degrees_east)
latitude (degrees_north)
scen (unitless)
btemp (degrees Celsius)
stemp (degrees Celsius)
preds1 (dimensionless)
preds (kilograms (kg))
se_fit (kilograms (kg))
preds1_upr (dimensionless)
preds1_lwr (dimensionless)


[Protein kinase A (PKA) substrate phosphorylation assays] - Results from protein kinase A (PKA) substrate phosphorylation assays conducted to investigate the role of soluble adenylyl cyclase (sAC) in sperm from the gonochoric, broadcast spawning coral Astrangia poculata (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress)

Most stony corals liberate their gametes into the water column via broadcast spawning, where fertilization hinges upon the activation of directional sperm motility. Sperm from gonochoric and hermaphroditic corals display distinct morphological and molecular phenotypes, yet it is unknown whether the signallng pathways controlling sperm motility are also distinct between these sexual systems. We addressed this knowledge gap using the gonochoric, broadcast spawning coral Astrangia poculata. This dataset is from protein kinase A (PKA) substrate (sub) phosphorylation assays used to investigate the role of PKA in sperm. Data are associated with Glass et al. (2023) Proceedings of the Royal Society B (10.1098/rspb.2023.0085). These data are also published in Dryad under DOI 10.5061/dryad.rn8pk0pg8.

cdm_data_type = Other
VARIABLES:
Colony (unitless)
time_elapsed (Time, seconds)
Treatment (unitless)
Stim (unitless)
Load (micrograms (ug))
Intensity (unitless)
Invert (unitless)
Fold_increase (unitless)


[Proteinaceous material content] - Protein assay of proteinaceous material in pelagic sediment from the North Atlantic gyre, South Pacific gyre, and Peru Basin from cruises KN223, KNOX02RR, and ODP leg 201 between 2002 and 2013 (Geochemical controls on organic carbon quantity and quality in the deep subsurface)

Protein assay of proteinaceous material in pelagic sediment from the North Atlantic gyre, South Pacific gyre, and Peru Basin from cruises KN223 (R/V Knorr), KNOX02RR (R/V Roger Revelle), and ODP leg 201 between 2002 and 2013.  Sediment samples were taken with gravity corers, multi corers, piston and advanced piston corers (APC).

cdm_data_type = Other
VARIABLES:
location (unitless)
expedition (unitless)
site (unitless)
date (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (Water Depth, m)
core_type (unitless)
depth_ (Depth, meters (m))
protein (micrograms of protein per milligram of sediment (μg protein/mg sediment))
prot_stdev (micrograms of protein per milligram of sediment (μg protein/mg sediment))


[ProteOMZ Peptide Level Spectral Counts] - Total spectral counts of peptides from the R/V Falkor cruise 160115 in the Central Pacific for the ProteOMZ expedition in 2016 (The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean)

Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 109952 unique peptides, each with spectral counts associated with each of the 103 samples, for 10 million data points.

cdm_data_type = Other
VARIABLES:
sample_id (unitless)
MS_MS_sample_name (unitless)
protein_id (unitless)
protein_molecular_weight_kDa (kDa)
best_protein_id_probability (unitless)
peptide_sequence (unitless)
peptide_start_index (unitless)
peptide_stop_index (unitless)
plus2H_spectra_count (count)
plus3H_spectra_count (count)
plus4H_spectra_count (count)
best_sequest_DCn_score (unitless)
best_sequest_Xcorr_score (unitless)
median_retention_time (minutes)
total_precursor_intensity (unitless)
TIC (unitless)
spectral_count_sum (count)
other_protein_ids (unitless)
station_id (unitless)
depth (Depth_m, m)
latitude (Latitude_dd, degrees_north)
longitude (Longitude_dd, degrees_east)
date_ymd (unitless)
time_hms (unitless)
minimum_filter_size_microns (microns)
maximum_filter_size_microns (microns)
cruise_id (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)


[ProteOMZ Protein Level Spectral Counts] - Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016 (The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean)

Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 56,577 protein identifications over 102 samples, for ~6 million data points.

cdm_data_type = Other
VARIABLES:
sample_id (untiless)
MS_MS_sample_name (untiless)
station_id (unitless)
depth (Depth_m, m)
latitude (Latitude_dd, degrees_north)
longitude (Longitude_dd, degrees_east)
date_ymd (unitless)
time_hms (unitless)
minimum_filter_size_microns (microns)
maximum_filter_size_microns (microns)
cruise_id (unitless)
protein_id (unitless)
spectral_count_sum (count)
molecular_weight_kDa (kDa)
protein_name (unitless)
ncbi_id (taxon)
ncbi_name (verbatimIdentifiation)
kegg_id (unitless)
kegg_description (unitless)
kegg_pathway (unitless)
pfams_id (unitless)
pfams_name (unitless)
uniprot_id (unitless)
enzyme_comm_id (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)


[protist abundance and biomass] - Abundance and biomass of protists from epifluorescence counts and bulk biomass from extracted chl-a from samples from R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-12 (Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea 	)

Abundance and biomass of protists from epifluorescence counts and bulk biomass from extracted chl-a from samples from R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-12.

cdm_data_type = Other
VARIABLES:
cruise_id (dimensionless)
cast (dimensionless)
station (dimensionless)
location_description (dimensionless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
taxon (dimensionless)
total_biomass_per_taxon (picograms C per milliliter)
experiment_num (dimensionless)
date (unitless)
season_year (text)
length (micrometers)
width (micrometers)
shape (dimensionless)
abundance (cells per milliliter)
abund_lower_95pcnt_CI (cells per milliliter)
abund_upper_95pcnt_CI (cells per milliliter)
cells_counted (dimensionless)
biovolume (cubic micrometers per milliliter)
dino_biomass (picograms C per cell)
diatoms_biomass (picograms C per cell)
protists_biomass (picograms C per cell)


[PRS bacteria identification] - Culture-independent identification of bacteria present in the pressure-retaining seawater (PRS) sampler deployed during Leggo drop 1 from R/V Falkor cruise FK141215 in the Challenger Deep, Mariana Trench in December 2014 (Patterns of Microbial Community Structure Within and Between Hadal Environments)

Culture-independent identification of bacteria present in the pressure-retaining seawater (PRS) sampler deployed during Leggo drop 1.

cdm_data_type = Other
VARIABLES:
SILVA_classification (unitless)
partial_16S_seq (Partial 16 S Seq, unitless)


[Pseudo-nitzschia spp. presence-absence and environmental data] - Pseudo-nitzschia spp. presence-absence and environmental data in Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023 (Northeast U.S. Shelf Long Term Ecological Research site)

This dataset includes environmental measurements and presence-absence of Pseudo-nitzschia species, a harmful algal bloom diatom genus, associated with samples from various sites in Narragansett Bay, Rhode Island, including the Narragansett Bay Long Term Plankton Time Series site, and several stations along the Northeast U.S. Shelf Long Term Ecological Research program transect. These data correspond to an analysis of Pseudo-nitzschia species composition and domoic acid toxin production during winters and summers from 2018-2023 in Narragansett Bay and the Northeast U.S. Shelf, which was prepared for submission to Harmful Algae (Roche, et al.). This dataset includes sites information, particulate domoic acid concentration, Pseudo-nitzschia cell counts, temperature, salinity, nutrient concentrations, presence-absence of Pseudo-nitzschia species, and NCBI BioSample accessions.

cdm_data_type = Other
VARIABLES:
library_ID (unitless)
Sample_Date (unitless)
Site (unitless)
Site_Abbreviation (unitless)
latitude (degrees_north)
longitude (degrees_east)
Depth_category (unitless)
depth (m)
Season (unitless)
LTER_cruise (unitless)
CTD_cast (unitless)
Niskin (unitless)
pDA (nanograms/liter (ng/L))
Pseudonitzschia (cells/liter)
Temp (Degrees Celsius (°C))
Salinity (Practical Salinity Units (PSU))
Phosphate (microMolar)
Silicate (microMolar)
... (28 more variables)


[pteropod respiration] - Pteropod respiration rates from NW Atlantic and NE Pacific; OC473 (2011) and NH1208 (2012) (Horizontal and Vertical Distribution of Thecosome Pteropods in Relation to Carbonate Chemistry in the Northwest Atlantic and Northeast Pacific )

Respiration rates of thecosome pteropod exposed to various O2 and CO2 concentrations

cdm_data_type = Other
VARIABLES:
cruise_id
species (text)
treatment (text)
temp (Temperature, Celsius)
date_local (unitless)
station (unitless)
latitude (degrees_north)
longitude (degrees_east)
tow (text)
weight_g (grams)
sample_volume (liters)
time_elapsed (hours)
O2_control (micromoles O2)
O2_expt (micromoles O2)
O2_respiration (micromoles O2/liter)
resp_rate (micromoles O2/gram hour)
comments_expt (text)


[pteropod shell dissolution] - Pteropod shell dissolution in natural and high-CO2 environments from samples collected on RRS James Clark Ross cruise JR177 in the Scotia Sea, Southern Ocean from 2007-2008 (An Investigation of the Role of Nutrition in the Coral Calcification Response to Ocean Acidification)

This dataset contains data from a study of pteropod shell dissolution on individuals exposed to CO2-enriched seawater. The data include the amount of dissolution as well as the physical and chemical parameters on which carbonate chemistry parameters were calculated.

cdm_data_type = Other
VARIABLES:
treatment (dimensionless)
incubation_time (days)
N (dimensionless)
species (dimensionless)
sal (dimensionless)
temp (Temperature, degrees Celsius)
phosphate (Mass Concentration Of Phosphate In Sea Water, micromoles per kilogram (umol/kg))
silicate (Mass Concentration Of Silicate In Sea Water, micromoles per kilogram (umol/kg))
alk_tot (micromoles per kilogram (umol/kg))
alk_tot_stdev (micromoles per kilogram (umol/kg))
DIC (micromoles per kilogram (umol/kg))
DIC_stdev (micromoles per kilogram (umol/kg))
pH (Sea Water Ph Reported On Total Scale, dimensionless)
pH_stdev (P H Stdev, dimensionless)
pCO2 (P CO2, microatmospheres (uatm))
pCO2_stdev (P CO2 Stdev, microatmospheres (uatm))
bicarbonate (micromoles per kilogram (umol/kg))
bicarbonate_stdev (micromoles per kilogram (umol/kg))
carbonate (micromoles per kilogram (umol/kg))
carbonate_stdev (micromoles per kilogram (umol/kg))
omega_Arg (dimensionless)
omega_Arg_stdev (dimensionless)
non_diss (percentage (%))
non_diss_stdev (percentage (%))
diss_rate1 (percentage (%))
... (5 more variables)


[PTR ToF-MS peak tables: Phaeodactylum tricornutum and cocultures] - Mass-to-charge ratio +1 values in microbial cultures (Phaeodactylum tricornutum and cocultures) detected by proton transfer reaction time-of-flight mass spectrometer in 2021 and 2022 (Interactions between phytoplankton and bacterioplankton mediated by volatile organic compounds)

Mass-to-charge ratio (m/z) +1 values in microbial cultures (Phaeodactylum tricornutum and cocultures) were detected by proton transfer reaction time-of-flight mass spectrometer following methods in Moore et al. (2020). doi:10.1111/1462-2920.14861

cdm_data_type = Other
VARIABLES:
Sample_Name (unitless)
Sample_Name_internal (unitless)
Sample_Replicate (unitless)
Sample_Tech (unitless)
Time_seconds (seconds (s))
mz_value (unitless)
mz_signal (parts per billion by volume (ppbv))


[PTR ToF-MS peak tables: Synechococcus WH8102] - Mass-to-charge ratio +1 values in microbial cultures (Synechococcus WH8102) detected by proton transfer reaction time-of-flight mass spectrometer in 2021 and 2022 (Interactions between phytoplankton and bacterioplankton mediated by volatile organic compounds)

Mass-to-charge ratio (m/z) +1 values in microbial cultures (Synechococcus WH8102) were detected by proton transfer reaction time-of-flight mass spectrometer following methods in Moore et al. (2020). doi:10.1111/1462-2920.14861

cdm_data_type = Other
VARIABLES:
Sample_Name (unitless)
Sample_Name_internal (unitless)
Sample_Replicate (unitless)
Sample_Tech (unitless)
Time_seconds (seconds (s))
mz_value (unitless)
mz_signal (parts per billion by volume (ppbv))


[PUA chlorophyll a] - PUA (polyunsaturated aldehydes) experiments: Chlorophyll-a concentrations, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015 (The effects of diatom-produced polyunsaturated aldehydes on the microbial food web in temperate and polar waters)

PUA (polyunsaturated aldehydes) experiments: Chlorophyll-a concentrations, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015.

cdm_data_type = Other
VARIABLES:
Experiment (unitless)
Treatment (unitless)
Rep (unitless)
Chl (micrograms/liter)


[PUA experimental design] - PUA (polyunsaturated aldehydes) experiments: Experimental Conditions, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015 (The effects of diatom-produced polyunsaturated aldehydes on the microbial food web in temperate and polar waters)

PUA (polyunsaturated aldehydes) experiments: Experimental Conditions, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015

cdm_data_type = Other
VARIABLES:
Experiment (unitless)
Location (unitless)
longitude (degrees_east)
latitude (degrees_north)
Date (unitless)
Temperature (degrees Celsius)
Salinity (Sea Water Practical Salinity, PSU)
Light_Dark_Cycle (unitless)
Medium (unitless)
Copepod_spp (unitless)
Number_Copepods (copepods)
Bacteria (cells per ml)
Chl_a (micrograms/liter)
Dinoflag (micrograms Carbon/liter)
Ciliate (micrograms Carbon/liter)
HepD (Hep D, nanoMolar)
HepP (Hep P, nanoMolar)
OctD (Oct D, nanoMolar)
OctP (Oct P, nanoMolar)
DecD (Dec D, nanoMolar)
DecP (Dec P, nanoMolar)
Tot (nanoMolar)


[PUA Microzooplankton Biomass] - Microzooplankton biomass estimates from PUA (polyunsaturated aldehydes) experiments, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015 (The effects of diatom-produced polyunsaturated aldehydes on the microbial food web in temperate and polar waters)

Microzooplankton biomass estimates from PUA (polyunsaturated aldehydes) experiments, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015.

cdm_data_type = Other
VARIABLES:
Experiment (unitless)
Bottle_ID (unitless)
Treatment (unitless)
Rep (unitless)
Taxa (unitless)
Phylum (unitless)
ESD (micrometers)
Biomass (micrograms carbon/liter)


[PULSE chlorophyll data] - Chlorophyll data collected in the Gulf of Maine on F/V Lady Regena (NEC-JR2001-1) from 2003-2005 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Chlorophyll data collected in the Gulf of Maine on F/V Lady Regena (NEC-JR2001-1) from 2003-2005 (NEC-CoopRes project)

cdm_data_type = Other
VARIABLES:
year
yrday_local
time (Date Local, seconds since 1970-01-01T00:00:00Z)
station
latitude (degrees_north)
longitude (degrees_east)
depth (m)
replicate
chla_GF (Concentration Of Chlorophyll In Sea Water)
chla_8um (Concentration Of Chlorophyll In Sea Water)
phaeo_GF
phaeo_8um


[PULSE nutrients] - Nutrients: Cooperative Long-term Ecosystem Monitoring in the Gulf of Maine (PULSE) collected from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Nutrients: Cooperative Long-term Ecosystem Monitoring in the Gulf of Maine (PULSE) collected from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine (NEC-CoopRes project)

cdm_data_type = Other
VARIABLES:
year
yrday_local
month_local
day_local
date_local
station
latitude (degrees_north)
longitude (degrees_east)
depth (m)
NO3 (microMoles)
NH4 (microMoles)
PO4 (microMoles)


[PULSE zooplankton abundance] - Zooplankton species abundance: Cooperative Long-Term Ecological Monitoring Project (PULSE), Gulf of Maine from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine, 1999-2004 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Zooplankton species abundance: Cooperative Long-Term Ecological Monitoring Project (PULSE), Gulf of Maine from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine, 1999-2004 (NEC-CoopRes project).

cdm_data_type = Other
VARIABLES:
year
yrday_local (ddd.d)
month_local
day_local
time (Date Local, seconds since 1970-01-01T00:00:00Z)
station
latitude (degrees_north)
longitude (degrees_east)
cast
depth (m)
volfilt (cubic meters)
species
abundance


[PULSE zooplankton dry weight] - Zooplankton dry weights: Cooperative Long-term Ecological Monitoring Project (PULSE), Gulf of Maine collected from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine, 1999-2004 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Zooplankton dry weights: Cooperative Long-term Ecological Monitoring Project (PULSE), Gulf of Maine collected from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine, 1999-2004 (NEC-CoopRes project)

cdm_data_type = Other
VARIABLES:
year
cruise_id
month_local
day_local
yrday_local
time (Date Local, seconds since 1970-01-01T00:00:00Z)
station
latitude (degrees_north)
longitude (degrees_east)
cast
depth (m)
vol_filt (cubic meters)
dry_wgt (g/m^3)
dry_wgt_integ (grams/m2)


[Pump CTD Profiles] - Pump CTD profiles from the EMB276 cruise on R/V Elisabeth Mann Borgese in the Baltic Sea from September 20-27, 2021 (Collaborative Research: Manganese Cycling and Coupling Across Redox Boundaries within Stratified Basins of the Baltic Sea)

Pump CTD profiles  include data on time, latitude, longitude, depth, h2s, o2, sulfide, pH, po4, NO3, NO2, NH4, SiO2, fluorescence, turbidity, density, temperature, and salinity from six stations in the Baltic Sea collected between September 20 - 27, 2021. Data was collected from the R/V Elisabeth Mann Borgese.

cdm_data_type = Other
VARIABLES:
cruise_name (unitless)
station_number (unitless)
station_name (unitless)
date (unitless)
time_UTC (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
latitude (Latitude_n, degrees_north)
longitude (Longitude_e, degrees_east)
max_depth_m (meters (m))
depth (m)
H2S_uM (micromolar (µM))
O2_uM (micromolar (µM))
total_sulfide_umol_l (micromole per liter (µmol/L))
pH (unitless)
PO4_umol_l (micromole per liter (µmol/L))
NO3 (micromole per liter (µmol/L))
NO2_umol_l (micromole per liter (µmol/L))
NH4_umol_l (micromole per liter (µmol/L))
SiO2_umol_l (micromole per liter (µmol/L))
Fluor_mg_m3 (mg/m^3)
Turb_NTU (NTU)
Density_Sig_tet (unitless)
Temp_C (degrees Celsius (°C))
Salinity_PSU_ (PSU)


[Pump mesozooplankton samples] - Mesozooplankton sample data from R/V Pelican cruises PE03-NGOMEX, PE04-NGOMEX, PE06-NGOMEX, PE07-NGOMEX, PE09-05 in the Northern Gulf of Mexico from 2003-2008 (NGOMEX - Living Marine Resources of the Northern Gulf of Mexico)

CTD casts using a high-capacity, diaphragm pump were conducted during the R/V Pelican cruises PE03-NGOMEX, PE04-NGOMEX, PE06-NGOMEX, PE07-NGOMEX, and PE09-05 in the Northern Gulf of Mexico between 2003 and 2008. Plankton samples were collected from discrete depths during the CTD casts. Subsamples of sample contents were manually counted, identified, and measured in the laboratory.

cdm_data_type = Other
VARIABLES:
ctd (unitless)
longitude (degrees_east)
latitude (degrees_north)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
d_min (minutes)
depth (m)
bottom (decibars (dbar))
s_per_50l (seconds (s))
mesh (micrometers (µm))
splits (unitless)
beaker (milliliters (ml))
aliquot (milliliters (ml))
replicate (unitless)
vol (cubic meters (m^3))
ID (unitless)
length (millimeters (mm))
width (millimeters (mm))
adj_count (unitless)
flag (unitless)


[Pump Profiler Casts - HRS1415] - Data from in situ pump profiler system collected on R/V Hugh R. Sharp cruise HRS1415 in August 2014 (The role of soluble Mn(III) in the biogeochemical coupling of the Mn, Fe and sulfur cycles)

Data from in situ pump profiler system collected on R/V Hugh R. Sharp cruise HRS1415 in August 2014

cdm_data_type = Other
VARIABLES:
Cast (unitless)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
time_local (unitless)
time_GMT (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
depth (m)
temp (Temperature, degrees Celsius)
salinity (Sea Water Practical Salinity, unitless)
O2 (micromolar (uM))
O2_stdev (micromolar (uM))
H2Splus_HSminus (H2 Splus HSminus, micromolar (uM))
H2Splus_HSminus_stdev (H2 Splus HSminus Stdev, micromolar (uM))
Particulate_MnOx_eqvln (Particulate Mn Ox Eqvln, nanomolar (nM))
Particulate_MnOx_eqvln_stdev (Particulate Mn Ox Eqvln Stdev, nanomolar (nM))
Dissolved_MnT (Dissolved Mn T, nanomolar (nM))
Dissolved_MnT_stdev (Dissolved Mn T Stdev, nanomolar (nM))
Dissolved_Mn2plus (nanomolar (nM))
Dissolved_Mn2plus_stdev (nanomolar (nM))
Dissolved_Mn3plus (nanomolar (nM))
pcnt_Mn3 (uM or %?)
Filtered_Fe2plus (micromolar (uM))
Filtered_Fe2plus_stdev (micromolar (uM))
Unfiltered_Fe2plus (micromolar (uM))
Unfiltered_Fe2plus_stdev (micromolar (uM))
Filtered_Fe3plus (micromolar (uM))
... (5 more variables)


[qPCR assays] - Results from qPCR assays to quantify the abundance and photochemical performance of symbionts relative to coral cells in three coral species collected from colonies in southeast Florida in April and October 2019 before, during, and after heat stress tests (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications)

This dataset contains results from assays to quantify the abundance and photochemical performance of Breviolum, Cladocopium, and Durusdinium symbionts relative to coral cells in Montastraea cavernosa, Orbicella faveolata, and Siderastrea siderea corals collected from colonies in southeast Florida in April 2019 and in October 2019, before, during and after aquarium-based experimental heat stress tests. Bulk genomic DNA was extracted from tissue scrapings taken from 2.5cm diameter cores of corals and was used as a template for symbiont genus-specific qPCR assays. The resulting CT values were used to calculate the relative abundance of each symbiont genus within each coral core over the course of the heat stress. The photochemical efficiency of each coral core was also measured periodically throughout heat stress tests using an imaging pulse amplitude modulated (I-PAM) fluorometer. The publication based on these data is Buzzoni, et al. (2023) (DOI: 10.1007/s00338-023-02428-x).

cdm_data_type = Other
VARIABLES:
Species (unitless)
Treatment (unitless)
Core (unitless)
Collection_Latitude (degrees_north)
longitude (Collection_longitude, degrees_east)
Timepoint (unitless)
Sym_Host (unitless)
Y2 (unitless)
PropD (unitless)
Batch (unitless)
Date (unitless)
Colony (unitless)


[qPCR] - Quantitative PCR data from sediment samples from MPSV GREATSHIP MANISHA IODP-347 cruise in the Baltic Sea in 2013 (IODP-347 Microbial Quantification project) (Quantifying the contribution of the deep biosphere in the marine sediment carbon cycle using deep-sea sediment cores from the Baltic Sea)

Quantitative PCR data from sediment samples

Locations:
 Site 59C (Little Belt); Site 60B (Anholt Loch); 63E (Landsort Deep); 65C
(Bornholm Basin).
 Subsurface samples as deep as 85 meters below the Baltic Sea floor.

cdm_data_type = Other
VARIABLES:
Identifier (text)
latitude (degrees_north)
longitude (degrees_east)
Depth (meters)
Archaea_replicate_1 (copies/uL)
Archaea_replicate_2 (copies/uL)
Bacteria_replicate_1 (copies/uL)
Bacteria_replicate_2 (copies/uL)
ANME1_replicate_1 (copies/uL)
ANME1_replicate_2 (copies/uL)
MCG_replicate_1 (copies/uL)
MCG_replicate_2 (copies/uL)


[qPCR_Parameters] - Limits of detection and qPCR efficiencies from cruise SAV 17-16 in the South Atlantic Bight aboard the R/V Savannah from 2011 to 2017 (Collaborative Research: Direct Oxidation of Organic Nitrogen by Marine Ammonia Oxidizing Organisms)

This dataset contains the results of analyses related to ammonia oxidation rates, including oxidation rates of 15N supplied as ammonia, urea, 1,2 diamino ethane, 1,3 diamino propane, 1,4 diamino butane (putrescine), arginine and glutamate. Ancillary data including nutrient concentrations and the abundance of ammonia- and nitrite-oxidizing microorganisms are also reported. The samples analyzed to produce the dataset were collected off the coast of Georgia, USA. Most data were collected on one cruise in August 2017, incidental data from 2011, 2013 and 2016 are also reported.

cdm_data_type = Other
VARIABLES:
qPCR_Parameters (Q PCR Parameters, unitless)
Probe (unitless)
Forward_primer (unitless)
Reverse_primer (unitless)
Cycling_conditions (unitless)
Efficiency (unitless)
Limit_of_Detection_template (copies per microliter of template)
Limit_of_Detection_sample (copies per liter of sample)
Number_plates_run (count)
Reference (unitless)


[Quadrat counts] - Quadrat species counts and measurements along the Northern Central California coast from 2017 to 2021 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath)

Quadrat species counts and measurements collected concurrently with habitat complexity photos along the Northern Central California coast from 2017 to 2021.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Site_Code (unitless)
Area_Number (unitless)
Sector (unitless)
Quadrat_Waypoint (unitless)
lat (degrees_north)
longitude (degrees_east)
Quadrat_Area (square meters (m^2))
Species (per individual)
n (per individual)
Tube_Number (unitless)
Primary_Measurement_Size (millimeters (mm))
Primary_Measurement_description (unitless)
Secondary_Measurement_Size (millimeters (mm))
Secondary_Measurement_description (unitless)
Notes (unitless)
Photo_ID (unitless)


[Quadrat data] - Quadrat sampling information along the Northern Central California coast from 2017 to 2021 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath)

Quadrat sampling information collected concurrently with habitat complexity photos along the Northern Central California coast from 2017 to 2021.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Site_Code (unitless)
Area_Number (unitless)
Sector (unitless)
Quadrat_Waypoint (unitless)
lat (degrees_north)
longitude (degrees_east)
Quadrat_Area (square meters (m^2))
GPS_Name (unitless)
Site (unitless)
Start_Time (unitless)
Quadrat_Notes (unitless)
Most_common_substrate (unitless)
Second_most_common_substrate (unitless)
Quadrat_Photo (unitless)
GPS_Accuracy (meters (m))
Person (unitless)
time (Quadrat_start_datetime_utc, seconds since 1970-01-01T00:00:00Z)


[Qualitative biodiversity survey of corals in Palau] - Community composition of corals in Palau determined by a qualitative survey conducted in 2021-2022 (Collaborative Research: How do selection, plasticity, and dispersal interact to determine coral success in warmer and more variable environments?)

Bottlenecks in the early life-history stages of corals can shape community composition across reefs. We used photographic surveys and the deployment of tiles to capture recruit, juvenile, and adult corals at 7 sites across Palau. Photographic surveys were undertaken using two methods: a qualitative biodiversity survey (2021–2022) and quantitative transects (2023). This dataset includes the results from the biodiversity survey.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Type (unitless)
Stage (unitless)
Genus (unitless)
Abundance (count of individuals)


[Quantification of ciliated band length per unit protein in early echinoderm larvae: biometirc data] - Quantification of ciliated band length per unit protein in early echinoderm larvae (biometirc data), collected between 2020 and 2022 in the laboratory at California State University, Long Beach. (RUI: Effects of large inedible particles on larval feeding, planktonic larval duration, and juvenile quality in marine invertebrates)

This experiment compares the ciliated band length to the protein content of eight species of echinoderm larvae. The data was collected between 2020 and 2022 in the laboratory at California State University, Long Beach.

cdm_data_type = Other
VARIABLES:
Species (unitless)
Age (days)
Dev (unitless)
Beaker (unitless)
Larva (unitless)
cbl (mm)
bl (mm)
sl (mm)
sw (mm)
sa (square millimeter (mm^2))
mpo (mm)
po1 (mm)
po2 (mm)
geospatial_bound_N (degrees_north)
geospatial_bound_S (degrees_north)
geospatial_bound_E (degrees_east)
geospatial_bound_W (degrees_east)
experiment_location_lat (degrees_north)
experiment_location_long (degrees_east)
experiment_start (unitless)
experiment_end (unitless)


[Quantification of ciliated band length per unit protein in early echinoderm larvae: protein data] - Quantification of ciliated band length per unit protein in early echinoderm larvae (protein data), collected between 2020 and 2022 in the laboratory at California State University, Long Beach. (RUI: Effects of large inedible particles on larval feeding, planktonic larval duration, and juvenile quality in marine invertebrates)

This experiment compares the ciliated band length to protein content of eight species and the protein content of the larvae. The data was collected between 2020 and 2022 in the laboratory at California State University, Long Beach.

cdm_data_type = Other
VARIABLES:
Species (unitless)
Age (days)
Dev (unitless)
Beaker (unitless)
Sample (unitless)
Average (nanograms (ng))
sd (unitless)
geospatial_bound_N (degrees_north)
geospatial_bound_S (degrees_north)
geospatial_bound_E (degrees_east)
geospatial_bound_W (degrees_east)
experiment_location_lat (degrees_north)
experiment_location_long (degrees_east)
experiment_start (unitless)
experiment_end (unitless)


[Quantitative PCR data] - Quantitative PCR data from samples collected on the R/V Sarmiento de Gamboa cruise in the subtropical North Atlantic Ocean between January and March 2011 (Microbial associations in zooplankton project) (Microbial associations in zooplankton: significance for the marine nitrogen cycle)

Quantitative PCR data from samples collected on the R/V Sarmiento de Gamboa cruise in the subtropical North Atlantic Ocean between January and March 2011 (Microbial associations in zooplankton project)

cdm_data_type = Other
VARIABLES:
project (unitless)
date (unitless)
time2 (Time, unitless)
station (unitless)
latitude (degrees_north)
longitude (degrees_east)
number (unitless)
size_fraction (microns)
UCYN_A (genes per liter)
Gamma_24774A11 (Gamma 24774 A11, genes per liter)
group_B (genes per liter)
Tricho (genes per liter)
Het1 (genes per liter)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Radiocarbon ages for Guaymas Basin and Sonora Margin sediments] - Radiocarbon [14C] ages of sedimentary organic matter and sedimentation rates for Guaymas Basin and Sonora Margin sediments collected from R/V El Puma, leaving Guaymas on October 14, 2014 and returning to Mazatlan on October 27, 2014 (RAPID proposal: Site characterization cruise to document the active and extensive subsurface biosphere in the Guaymas Basin)

Radiocarbon [14C] ages of sedimentary organic matter and sedimentation rates for Guaymas Basin and Sonora Margin sediments collected from R/V El Puma (the Pacific Coast research vessel of the Autonomous University of Mexico) from October 14, 2014 to October 27, 2014.

cdm_data_type = Other
VARIABLES:
Core (unitless)
Depth_in_core (Depth, centimters (cm))
C14_age (years before present (ybp))
C14_age_uncertainty (+/- years before present (ybp))
Calendar_age (years before present (ybp))
Sed_Rate (millimeters per year (mm/year))


[radionuclide uptake by humic acids] - Experimental observations of radionuclide uptake by colloidal and particulate humic acids obtained from 14 soils collected worldwide (Biopolymers as carrier phases for selected natural radionuclides (of Th, Pa, Pb, Po, Be) in diatoms and coccolithophores)

The uptake and binding of six particle-reactive and/or redox-sensitive radionuclides (210Pb, 234Th, 7Be, 59Fe, 237Np and 233Pa) with different organic functionalities of three size fractions.

cdm_data_type = Other
VARIABLES:
No (unitless)
HA_ID (unitless)
Site (unitless)
Soil_Order (unitless)
Land_use (unitless)
Sample_ID (unitless)
part_210Pb (Part 210 Pb, unitless)
part_234Th (Part 234 Th, unitless)
part_7Be (Part 7 Be, unitless)
part_59Fe (Part 59 Fe, unitless)
part_237Np (Part 237 Np, unitless)
part_233Pa (Part 233 Pa, unitless)
col_210Pb (Col 210 Pb, unitless)
col_234Th (Col 234 Th, unitless)
col_7Be (Col 7 Be, unitless)
col_59Fe (Col 59 Fe, unitless)
col_237Np (Col 237 Np, unitless)
col_233Pa (Col 233 Pa, unitless)
logKd_210Pb (Log Kd 210 Pb, unitless)
logKd_234Th (Log Kd 234 Th, unitless)
logKd_7Be (Log Kd 7 Be, unitless)
logKd_59Fe (Log Kd 59 Fe, unitless)
logKd_237Np (Log Kd 237 Np, unitless)
logKd_233Pa (Log Kd 233 Pa, unitless)
logKdc_210Pb (Log Kdc 210 Pb, unitless)
logKdc_234Th (Log Kdc 234 Th, unitless)
... (12 more variables)


[RADseq data from Atlantic silversides used for linkage and QTL mapping] - RADseq data from Atlantic silversides used for linkage and QTL mapping. (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline)

ddRADseq data from 568 Atlantic silversides (Menidia menidia) that are either F1 or F2 offspring to wild-caught parents from Georgia and New York used in a controlled breeding experiment. The data were used to build linkage maps for each of the separate populations and their inter-population cross, and to perform quantitative trait locus mapping.

cdm_data_type = Other
VARIABLES:
bioproject_accession (units)
biosample_accession (units)
taxonomic_name (units)
mother_f0_sampling_location (units)
lat_mother (degrees_north)
lon_mother (degrees_east)
father_f0_sampling_location (units)
lat_father (degrees_north)
lon_father (degrees_east)
SRA_study_accession (units)
SRA_experiment_accession (units)
SRA_run_accession (units)
library_ID (units)
title (units)
library_strategy (units)
library_source (units)
library_selection (units)
library_layout (units)
platform (units)
instrument_model (units)
design_description (units)
filetype (units)
sample_name (units)
filename (units)


[Rainfall and surface light intensity] - Measurements of rainfall and surface light intensity (PAR) in St. John, US Virgin Islands from 2014-2017. (Collaborative research: Ecology and functional biology of octocoral communities)

Data supporting publication through measurements of rainfall on St. John and surface light adjacent to Lameshur Bay. These data describe rainfall on the north shore of St. John as measured by R. Boulon using a manual rain gauge.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Month (unitless)
Rainfall (centimeters per month)
SurfaceLight_Mean (Surface Light Mean, umol photons per square meter per day)
SurfaceLight_SE (Surface Light SE, umol photons per square meter per day)


[Rainfall and temperature data] - Rainfall and seawater temperature in St. John, USVI in 1987–2013 (St. John LTREB project, VI Octocorals project). (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

Temperature and rainfall data for St. John USVI.

cdm_data_type = Other
VARIABLES:
year (unitless)
rainfall (centimeters)
temp_seawaterSurface (Temp Seawater Surface, celsius)
temp_min (celsius)
temp_max (celsius)
hotDays_num (Hot Days Num, count)
coldDays_num (Cold Days Num, count)


[Rapid Light Curves_PAM] - Measurements of fluorescence of photosystem II in Plocamium cartilagineum under various and pCO2 and temperature conditions (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae)

This dataset includes photosynthetic pigment concentrations in Plocamium cartilagineum grown under various temperatures and CO2 levels, from July 2014 to February 2015. The parameters reported are: the concentrations of Chlorophyll a, Phycoerythrin, Phycocyanin, Allophycocyanin, and total Phycobiliprotein, and the ratio of total Phycobiliprotein to Chlorophyll A.

cdm_data_type = Other
VARIABLES:
Trial (unitless)
Tank_ID (unitless)
pCO2 (P CO2, atm)
Temp (Temperature, degrees Celsius (°C))
Plant_ID (unitless)
ID (unitless)
Week (unitless)
date (unitless)
light (micromole photons/meter^2/second ( µmole photons . m^-2 . s^-1))
F (unitless)
Fm (unitless)
Yield (unitless)
rETR (R ETR, unitless)
qP (Q P, unitless)
qN (Q N, unitless)
NPQ (unitless)


[Raw patterns] - Sex ratio and GSI data for M. beryllina collected offshore of Pt. Lobos, California from 2009 to 2010. (Impacts of size-selective mortality on sex-changing fishes)

Sex ratio and GSI data for M. beryllina collected offshore of Pt. Lobos, California from 2009 to 2010.

cdm_data_type = Other
VARIABLES:
Investigator (unitless)
Site (unitless)
Date (unitless)
MeanGSI (Mean GSI, count)
Fs (count)
Ms (count)
Total (count)


[Reciprocal transplant expt. - ecological survey] - Coral colony sizes and conditions, of three species of the Orbicella complex (Orbicella annularis, O. faveolata and O. franksi) in two donor sites of a reciprocal transplant experiment, Varadero and Punta Brava, 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

This dataset contains the primary data of the bathymetric survey of three species of the Orbicella complex (Orbicella annularis, O. faveolata and O. franksi). The surveys were performed in two donor sites of a reciprocal transplant experiment:  Varadero and Punta Brava. The number of colonies and some physiological traits recorded on a belt transect deployed perpendicular to the reef slope at a series of depths are reported.

cdm_data_type = Other
VARIABLES:
Site (unitless)
depth (m)
Transect (unitless)
taxon_code (unitless)
diam_max (centimeters)
diam_min (centimeters)
height (centimeters)
mortality_old (unitless)
mortality_new (unitless)
mortality_total (unitless)


[Reciprocal transplant expt. - irradiance and light attenuation 2017] - Irradiance and estimated light attenuation coefficient, Kd, underwater and onshore in Varadero Reef, 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

This dataset contains the primary data of irradiance recorded underwater and onshore and the estimated light attenuation coefficient, Kd, based on these data in Varadero Reef. The irradiance recorded synchronously onshore and underwater were used to estimate the variability of the light attenuation coefficient (Kd) resulting from temporal variation of the optical properties of water.

cdm_data_type = Other
VARIABLES:
Date (unitless)
time2 (Time, unitless)
DateTimeLocal (Date Time Local, unitless)
Irradiance_uw (micromol quanta meter^-2 second^-1)
Irradiance_onshore (micromol quanta meter^-2 second^-1)
Kd_est (meter^-1)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Reciprocal transplant expt. - Photosynthetic parameters] - Photosynthesic parameters (calculated alpha, Pmax, Respiration, Ek and Ec) for each P-E curve for coral Orbicella faveolata from Rosaria and Varadero reef sites and Cartagena Bay, Colombia, 2016 and 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

This dataset contains the results of the photosynthetic parameters calculated based on the analysis of the P-E curves from coral fragment of the species Orbicella faveolata used in the transplant experiment between three sites: Varadero (10\u00b018'23.3\N, 75\u00b035'08.0\W), Rosario (10\u00b011'12.1\N, 75\u00b044'43.0\W) and Abanico (10\u00b018'5.80\N, 75\u00b034'37.10\W). The tag number/color of each fragment, the date of data collection, and the sites of origin and destination are specified.

cdm_data_type = Other
VARIABLES:
Source_site (unitless)
Tag_num (unitless)
Tag_color (unitless)
Destination_site (unitless)
Data_Timepoint (unitless)
Date_collected (unitless)
Area_cm2 (centimeter^2)
Chl_a (Concentration Of Chlorophyll In Sea Water, milligrams Chla meter^-2)
D_675 (unitless)
a_star_675 (meters^2 milligram Chla^-1)
alpha (mol Oxygen mol quanta^-1)
Ec (micromol quanta meter^-2 second^-1)
Ek (micromol quanta meter^-2 second^-1)
Rd (micromol Oxygen meter^-2 second^-1)
Pmax (micromol Oxygen meter^-2 second^-1)


[Reciprocal transplant expt. - PSII of random colonies] - Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on random coral colonies of Orbicella faveolata from Varadero and Rosario reefs, Colombia, May 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (\u0394F/Fm') and at dusk (Fv/Fm) on random coral colonies of Orbicella faveolata for a reciprocal transplant experiment, from Varadero and Rosario reefs, Colombia, May 2017

cdm_data_type = Other
VARIABLES:
Date (unitless)
time2 (Time, unitless)
Type (unitless)
Site (unitless)
Colony (unitless)
F (unitless)
Fm_prime (unitless)
Yield_PSII (unitless)
depth (m)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Reciprocal transplant expt. - PSII of transplanted corals] - Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata, transplanted from Varadero and Rosario reefs, Colombia, May 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (\u0394F/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata. Coral fragments were transplanted from Varadero and Rosario reefs to Varadero reef, Rosario reef, or Cartagena Bay, Colombia, May 2017.

cdm_data_type = Other
VARIABLES:
Date (unitless)
time2 (Time, unitless)
Type (unitless)
Frag (unitless)
Tag_color (unitless)
Source_site (unitless)
Destination_site (unitless)
F (unitless)
Fm_prime (unitless)
Yield_PSII (unitless)
depth (m)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Reciprocal transplants] - Data from reciprocal transplant experiments conducted on Porites coral collected on Palau in December 2012 (Toward Predicting the Impact of Ocean Acidification on Net Calcification by a Broad Range of Coral Reef Ecosystems: Identifying Patterns and Underlying Causes)

Data from reciprocal transplant experiments conducted on Porites coral collected on Palau in December 2012.

cdm_data_type = Other
VARIABLES:
coral_id (unitless)
transplant_duration (months)
original_omegaAR (Original Omega AR, unitless)
transplant_omegaAR (Transplant Omega AR, unitless)
treatment_code (unitless)
calc_rate (milligrams per square centimeter per month (mg/cm2/month))
status (unitless)


[reconstructed genomes] - Reconstructed genomes from North Pond, western flank of the Mid-Atlantic Ridge, from 2012-2014 (Collaborative Research: Characterization of Microbial Transformations in Basement Fluids, from Genes to Geochemical Cycling)

Reconstructed genomes from North Pond

cdm_data_type = Other
VARIABLES:
bioproject_id (unitless)
Assembly (unitless)
Level (unitless)
WGS (unitless)
BioSample (Bio Sample, unitless)
Isolate (unitless)
Taxonomy (unitless)


[Recoveries and partition coefficients] - Po, Pb and Be partition coefficients on nanoparticles from laboratory experiments (Biopolymers as carrier phases for selected natural radionuclides (of Th, Pa, Pb, Po, Be) in diatoms and coccolithophores)

Laboratory sorption experiments were carried out to examine the adsorption of 210Po, 210Pb and 7Be and their fractionation on inorganic nanoparticles, including SiO2,CaCO3, Al2O3, TiO2 and Fe2O3, in the presence or absence of macromolecular organic compounds (MOCs) that include humic acids (HA), acid polysaccharides (APS) and proteins (BSA), in natural seawater.

cdm_data_type = Other
VARIABLES:
System (unitless)
Organic_nanoparticle (unitless)
Inorganic_nanoparticle (unitless)
Pb210_recovery (unitless)
err_Pbrec (unitless)
Be7_recovery (unitless)
err_Berec (unitless)
Po210_recovery (unitless)
err_Porec (unitless)
Partition_coefficient_of_210Pb_Kc (Partition Coefficient Of 210 Pb Kc, 10^4 Liters per Kilogram (L/kg))
err_Kc_Pb (10^4 Liters per Kilogram (L/kg))
Partition_coefficient_of_7Be_Kc (Partition Coefficient Of 7 Be Kc, 10^4 Liters per Kilogram (L/kg))
err_Kc_Be (10^4 Liters per Kilogram (L/kg))
Partition_coefficient_of_210Po_Kc (Partition Coefficient Of 210 Po Kc, 10^4 Liters per Kilogram (L/kg))
err_Kc_Po (10^4 Liters per Kilogram (L/kg))


[Recruit area measurements] - Area of Orbicella faveolata recruits hosting different proportions of various symbiont genera from a symbiont acquisition laboratory experiment conducted in 2018 and 2019 (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications)

This dataset includes area (mm2) of Orbicella faveolata recruits hosting different proportions of various symbiont genera.

These data correspond to research presented in Williamson et al. (2021), published in Coral Reefs and funded in part by the NSF project "Symbiont Shifts on Reefs". They were used to test if Orbicella faveolata recruits could establish symbiosis with D. trenchii supplied by nearby “donor” colonies and examined the resulting ecological trade-offs to evaluate early Symbiodiniaceae manipulation as a scalable tool for reef restoration. We exposed aposymbiotic recruits to 29 °C or 31 °C and to fragments of Montastraea cavernosa (containing Cladocopium ITS2 type C3) or Siderastrea siderea (containing D. trenchii). Next, a subset of recruits were exposed to a 60-day heat stress. These data include survivorship and symbiont acquisition rates, symbiont identity and density data (derived using qPCR), polyp area measurements, and scoring of bleaching and survivorship during a heat stress experiment. Overall, proportion of D. trenchii hosted was negatively correlated with polyp size and symbiont density, indicating a trade-off between growth (of both host and symbiont) and heat tolerance. These findings suggest that, while donor colonies may be effective sources for seeding coral recruits with thermotolerant symbionts, practitioners will need to balance the likely benefits and costs of these approaches when designing restoration strategies.

cdm_data_type = Other
VARIABLES:
Date_of_Photo (unitless)
Image_Name (unitless)
Tank (unitless)
Adult (unitless)
Temp (unitless)
Area_mm2 (square millimeters (mm2))