[Projected changes in habitat suitability] - Projected changes in habitat suitability for 33 marine species on the Northeast US shelf based on species distribution models fit to bottom trawl survey data from the NOAA Northeast Fisheries Science Center (Adaptations of fish and fishing communities to rapid climate change)

Summary:
Projected changes in habitat suitability for 33 marine species on the Northeast US shelf. Changes in habitat suitability are calculated based on species distribution models fit to bottom trawl survey data from the NOAA Northeast Fisheries Science Center. Positive values indicate an increase in habitat suitability by 2040-2050 relative to historical (1963-2005). The spatial resolution of projections is 0.25 x 0.25 degrees.

cdm_data_type = Other
VARIABLES:
brosme_brosme (unitless)
centropristis_striata (unitless)
gadus_morhua (unitless)
glyptocephalus_cynoglossus (unitless)
hippoglossoides_platessoides (unitless)
hippoglossus_hippoglossus (unitless)
leucoraja_ocellata (unitless)
limanda_ferruginea (unitless)
lophius_americanus (unitless)
zoarces_americanus (unitless)
melanogrammus_aeglefinus (unitless)
merluccius_albidus (unitless)
merluccius_bilinearis (unitless)
paralichthys_dentatus (unitless)
peprilus_triacanthus (unitless)
pollachius_virens (unitless)
pseudopleuronectes_americanus (unitless)
scomber_scombrus (unitless)
scophthalmus_aquosus (unitless)
sebastes_fasciatus (unitless)
squalus_acanthias (unitless)
stenotomus_chrysops (unitless)
urophycis_chuss (unitless)
... (12 more variables)


[Projected species probability of occupancy and abundance under ocean warming] - Predicted probability of occupancy and abundance under a doubling of carbon dioxide using simulations from GFDL CM2.6 (Adaptations of fish and fishing communities to rapid climate change)

Summary:
Predicted probability of occupancy and abundance under a doubling of carbon dioxide using simulations from GFDL CM2.6. These data were published in Selden (2018).

cdm_data_type = Other
VARIABLES:
spp (unitless)
longitude (degrees_east)
latitude (degrees_north)
scen (unitless)
btemp (degrees Celsius)
stemp (degrees Celsius)
preds1 (dimensionless)
preds (kilograms (kg))
se_fit (kilograms (kg))
preds1_upr (dimensionless)
preds1_lwr (dimensionless)


[Protein kinase A (PKA) substrate phosphorylation assays] - Results from protein kinase A (PKA) substrate phosphorylation assays conducted to investigate the role of soluble adenylyl cyclase (sAC) in sperm from the gonochoric, broadcast spawning coral Astrangia poculata (Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress)

Summary:
Most stony corals liberate their gametes into the water column via broadcast spawning, where fertilization hinges upon the activation of directional sperm motility. Sperm from gonochoric and hermaphroditic corals display distinct morphological and molecular phenotypes, yet it is unknown whether the signallng pathways controlling sperm motility are also distinct between these sexual systems. We addressed this knowledge gap using the gonochoric, broadcast spawning coral Astrangia poculata. This dataset is from protein kinase A (PKA) substrate (sub) phosphorylation assays used to investigate the role of PKA in sperm. Data are associated with Glass et al. (2023) Proceedings of the Royal Society B (10.1098/rspb.2023.0085). These data are also published in Dryad under DOI 10.5061/dryad.rn8pk0pg8.

cdm_data_type = Other
VARIABLES:
Colony (unitless)
time_elapsed (Time, seconds)
Treatment (unitless)
Stim (unitless)
Load (micrograms (ug))
Intensity (unitless)
Invert (unitless)
Fold_increase (unitless)


[Proteinaceous material content] - Protein assay of proteinaceous material in pelagic sediment from the North Atlantic gyre, South Pacific gyre, and Peru Basin from cruises KN223, KNOX02RR, and ODP leg 201 between 2002 and 2013 (Geochemical controls on organic carbon quantity and quality in the deep subsurface)

Summary:
Protein assay of proteinaceous material in pelagic sediment from the North Atlantic gyre, South Pacific gyre, and Peru Basin from cruises KN223 (R/V Knorr), KNOX02RR (R/V Roger Revelle), and ODP leg 201 between 2002 and 2013.  Sediment samples were taken with gravity corers, multi corers, piston and advanced piston corers (APC).

cdm_data_type = Other
VARIABLES:
location (unitless)
expedition (unitless)
site (unitless)
date (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (Water Depth, m)
core_type (unitless)
depth_ (Depth, meters (m))
protein (micrograms of protein per milligram of sediment (μg protein/mg sediment))
prot_stdev (micrograms of protein per milligram of sediment (μg protein/mg sediment))


[ProteOMZ Peptide Level Spectral Counts] - Total spectral counts of peptides from the R/V Falkor cruise 160115 in the Central Pacific for the ProteOMZ expedition in 2016 (The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean)

Summary:
Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 109952 unique peptides, each with spectral counts associated with each of the 103 samples, for 10 million data points.

cdm_data_type = Other
VARIABLES:
sample_id (unitless)
MS_MS_sample_name (unitless)
protein_id (unitless)
protein_molecular_weight_kDa (kDa)
best_protein_id_probability (unitless)
peptide_sequence (unitless)
peptide_start_index (unitless)
peptide_stop_index (unitless)
plus2H_spectra_count (count)
plus3H_spectra_count (count)
plus4H_spectra_count (count)
best_sequest_DCn_score (unitless)
best_sequest_Xcorr_score (unitless)
median_retention_time (minutes)
total_precursor_intensity (unitless)
TIC (unitless)
spectral_count_sum (count)
other_protein_ids (unitless)
station_id (unitless)
depth (Depth_m, m)
latitude (Latitude_dd, degrees_north)
longitude (Longitude_dd, degrees_east)
date_ymd (unitless)
time_hms (unitless)
minimum_filter_size_microns (microns)
maximum_filter_size_microns (microns)
cruise_id (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)


[ProteOMZ Protein Level Spectral Counts] - Total spectral count of proteins from R/V Falkor cruise 160115 for the ProteOMZ expedition in the Central Pacific in 2016 (The ProteOMZ Expedition: Investigating Life Without Oxygen in the Pacific Ocean)

Summary:
Relative protein abundance data of the upper 1000m water column from the ProteOMZ R/V Falkor expedition. There are 56,577 protein identifications over 102 samples, for ~6 million data points.

cdm_data_type = Other
VARIABLES:
sample_id (untiless)
MS_MS_sample_name (untiless)
station_id (unitless)
depth (Depth_m, m)
latitude (Latitude_dd, degrees_north)
longitude (Longitude_dd, degrees_east)
date_ymd (unitless)
time_hms (unitless)
minimum_filter_size_microns (microns)
maximum_filter_size_microns (microns)
cruise_id (unitless)
protein_id (unitless)
spectral_count_sum (count)
molecular_weight_kDa (kDa)
protein_name (unitless)
ncbi_id (taxon)
ncbi_name (verbatimIdentifiation)
kegg_id (unitless)
kegg_description (unitless)
kegg_pathway (unitless)
pfams_id (unitless)
pfams_name (unitless)
uniprot_id (unitless)
enzyme_comm_id (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)


[protist abundance and biomass] - Abundance and biomass of protists from epifluorescence counts and bulk biomass from extracted chl-a from samples from R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-12 (Plankton Community Composition and Trophic Interactions as Modifiers of Carbon Export in the Sargasso Sea 	)

Summary:
Abundance and biomass of protists from epifluorescence counts and bulk biomass from extracted chl-a from samples from R/V Atlantic Explorer cruises AE1102, AE1118, AE1206, AE1219 in the Sargasso Sea, Bermuda Atlantic Time-Series Station in 2011-12.

cdm_data_type = Other
VARIABLES:
cruise_id (dimensionless)
cast (dimensionless)
station (dimensionless)
location_description (dimensionless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
taxon (dimensionless)
total_biomass_per_taxon (picograms C per milliliter)
experiment_num (dimensionless)
date (unitless)
season_year (text)
length (micrometers)
width (micrometers)
shape (dimensionless)
abundance (cells per milliliter)
abund_lower_95pcnt_CI (cells per milliliter)
abund_upper_95pcnt_CI (cells per milliliter)
cells_counted (dimensionless)
biovolume (cubic micrometers per milliliter)
dino_biomass (picograms C per cell)
diatoms_biomass (picograms C per cell)
protists_biomass (picograms C per cell)


[Protist Carbon - IO] - Protist carbon from microscopy samples collected in the Argo Basin of the Eastern Indian Ocean on R/V Roger Revelle cruise RR2202 from Feb to Mar 2022 (Collaborative Research: Mesoscale variability in nitrogen sources and food-web dynamics supporting larval southern bluefin tuna in the eastern Indian Ocean)

Summary:
This dataset is from CTD-based water collections of samples for phytoplankton in the Argo Basin in the Eastern Indian Ocean aboard the R/V Roger Revelle cruise in Feb-March 2022 led by Dr. Michael Landry to investigate the plankton community composition and impacts on growth and survival of larval Southern Bluefin Tuna (SBT). These samples were stained and fixed for epifluorescence microscopy analysis. The microscopy results include the abundance and carbon-based biomass estimates of nano (2 to 20 µm size) and microplankton (>20 µm) sized autotrophs and heterotrophs.

cdm_data_type = Other
VARIABLES:
Cruise (unitless)
Station_Event (unitless)
time (Datetimeutc, seconds since 1970-01-01T00:00:00Z)
Date (unitless)
latitude (degrees_north)
longitude (degrees_east)
Cycle (unitless)
Day_Cycle (unitless)
CTD_Cast (unitless)
depth (m)
Autotrophic_nanoplankton_abundance (cells/mL)
Autotrophic_nanoplankton_biomass (µg C L-1 (micrograms of carbon per liter))
Heterotrophic_nanoplankton_abundance (cells/mL)
Heterotrophic_nanoplankton_biomass (µg C L-1 (micrograms of carbon per liter))
Autotrophic_microplankton_abundance (cells/mL)
Autotrophic_microplankton_biomass (µg C L-1 (micrograms of carbon per liter))
Heterotrophic_microplankton_abundance (cells/mL)
Heterotrophic_microplankton_biomass (µg C L-1 (micrograms of carbon per liter))


[PRS bacteria identification] - Culture-independent identification of bacteria present in the pressure-retaining seawater (PRS) sampler deployed during Leggo drop 1 from R/V Falkor cruise FK141215 in the Challenger Deep, Mariana Trench in December 2014 (Patterns of Microbial Community Structure Within and Between Hadal Environments)

Summary:
Culture-independent identification of bacteria present in the pressure-retaining seawater (PRS) sampler deployed during Leggo drop 1.

cdm_data_type = Other
VARIABLES:
SILVA_classification (unitless)
partial_16S_seq (Partial 16 S Seq, unitless)


[Pseudo-nitzschia spp. presence-absence and environmental data] - Pseudo-nitzschia spp. presence-absence and environmental data in Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023 (Northeast U.S. Shelf Long Term Ecological Research site)

Summary:
This dataset includes environmental measurements and presence-absence of Pseudo-nitzschia species, a harmful algal bloom diatom genus, associated with samples from various sites in Narragansett Bay, Rhode Island, including the Narragansett Bay Long Term Plankton Time Series site, and several stations along the Northeast U.S. Shelf Long Term Ecological Research program transect. These data correspond to an analysis of Pseudo-nitzschia species composition and domoic acid toxin production during winters and summers from 2018-2023 in Narragansett Bay and the Northeast U.S. Shelf, which was prepared for submission to Harmful Algae (Roche, et al.). This dataset includes sites information, particulate domoic acid concentration, Pseudo-nitzschia cell counts, temperature, salinity, nutrient concentrations, presence-absence of Pseudo-nitzschia species, and NCBI BioSample accessions.

cdm_data_type = Other
VARIABLES:
library_ID (unitless)
Sample_Date (unitless)
Site (unitless)
Site_Abbreviation (unitless)
latitude (degrees_north)
longitude (degrees_east)
Depth_category (unitless)
depth (m)
Season (unitless)
LTER_cruise (unitless)
CTD_cast (unitless)
Niskin (unitless)
pDA (nanograms/liter (ng/L))
Pseudonitzschia (cells/liter)
Temp (Degrees Celsius (°C))
Salinity (Practical Salinity Units (PSU))
Phosphate (microMolar)
Silicate (microMolar)
... (28 more variables)


[pteropod respiration] - Pteropod respiration rates from NW Atlantic and NE Pacific; OC473 (2011) and NH1208 (2012) (Horizontal and Vertical Distribution of Thecosome Pteropods in Relation to Carbonate Chemistry in the Northwest Atlantic and Northeast Pacific )

Summary:
Respiration rates of thecosome pteropod exposed to various O2 and CO2 concentrations

cdm_data_type = Other
VARIABLES:
cruise_id
species (text)
treatment (text)
temp (Temperature, Celsius)
date_local (unitless)
station (unitless)
latitude (degrees_north)
longitude (degrees_east)
tow (text)
weight_g (grams)
sample_volume (liters)
time_elapsed (hours)
O2_control (micromoles O2)
O2_expt (micromoles O2)
O2_respiration (micromoles O2/liter)
resp_rate (micromoles O2/gram hour)
comments_expt (text)


[pteropod shell dissolution] - Pteropod shell dissolution in natural and high-CO2 environments from samples collected on RRS James Clark Ross cruise JR177 in the Scotia Sea, Southern Ocean from 2007-2008 (An Investigation of the Role of Nutrition in the Coral Calcification Response to Ocean Acidification)

Summary:
This dataset contains data from a study of pteropod shell dissolution on individuals exposed to CO2-enriched seawater. The data include the amount of dissolution as well as the physical and chemical parameters on which carbonate chemistry parameters were calculated.

cdm_data_type = Other
VARIABLES:
treatment (dimensionless)
incubation_time (days)
N (dimensionless)
species (dimensionless)
sal (dimensionless)
temp (Temperature, degrees Celsius)
phosphate (Mass Concentration Of Phosphate In Sea Water, micromoles per kilogram (umol/kg))
silicate (Mass Concentration Of Silicate In Sea Water, micromoles per kilogram (umol/kg))
alk_tot (micromoles per kilogram (umol/kg))
alk_tot_stdev (micromoles per kilogram (umol/kg))
DIC (micromoles per kilogram (umol/kg))
DIC_stdev (micromoles per kilogram (umol/kg))
pH (Sea Water Ph Reported On Total Scale, dimensionless)
pH_stdev (P H Stdev, dimensionless)
pCO2 (P CO2, microatmospheres (uatm))
pCO2_stdev (P CO2 Stdev, microatmospheres (uatm))
bicarbonate (micromoles per kilogram (umol/kg))
bicarbonate_stdev (micromoles per kilogram (umol/kg))
carbonate (micromoles per kilogram (umol/kg))
carbonate_stdev (micromoles per kilogram (umol/kg))
omega_Arg (dimensionless)
omega_Arg_stdev (dimensionless)
non_diss (percentage (%))
non_diss_stdev (percentage (%))
diss_rate1 (percentage (%))
... (5 more variables)


[PTR ToF-MS peak tables: Phaeodactylum tricornutum and cocultures] - Mass-to-charge ratio +1 values in microbial cultures (Phaeodactylum tricornutum and cocultures) detected by proton transfer reaction time-of-flight mass spectrometer in 2021 and 2022 (Interactions between phytoplankton and bacterioplankton mediated by volatile organic compounds)

Summary:
Mass-to-charge ratio (m/z) +1 values in microbial cultures (Phaeodactylum tricornutum and cocultures) were detected by proton transfer reaction time-of-flight mass spectrometer following methods in Moore et al. (2020). doi:10.1111/1462-2920.14861

cdm_data_type = Other
VARIABLES:
Sample_Name (unitless)
Sample_Name_internal (unitless)
Sample_Replicate (unitless)
Sample_Tech (unitless)
Time_seconds (seconds (s))
mz_value (unitless)
mz_signal (parts per billion by volume (ppbv))


[PTR ToF-MS peak tables: Synechococcus WH8102] - Mass-to-charge ratio +1 values in microbial cultures (Synechococcus WH8102) detected by proton transfer reaction time-of-flight mass spectrometer in 2021 and 2022 (Interactions between phytoplankton and bacterioplankton mediated by volatile organic compounds)

Summary:
Mass-to-charge ratio (m/z) +1 values in microbial cultures (Synechococcus WH8102) were detected by proton transfer reaction time-of-flight mass spectrometer following methods in Moore et al. (2020). doi:10.1111/1462-2920.14861

cdm_data_type = Other
VARIABLES:
Sample_Name (unitless)
Sample_Name_internal (unitless)
Sample_Replicate (unitless)
Sample_Tech (unitless)
Time_seconds (seconds (s))
mz_value (unitless)
mz_signal (parts per billion by volume (ppbv))


[PUA chlorophyll a] - PUA (polyunsaturated aldehydes) experiments: Chlorophyll-a concentrations, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015 (The effects of diatom-produced polyunsaturated aldehydes on the microbial food web in temperate and polar waters)

Summary:
PUA (polyunsaturated aldehydes) experiments: Chlorophyll-a concentrations, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015.

cdm_data_type = Other
VARIABLES:
Experiment (unitless)
Treatment (unitless)
Rep (unitless)
Chl (micrograms/liter)


[PUA experimental design] - PUA (polyunsaturated aldehydes) experiments: Experimental Conditions, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015 (The effects of diatom-produced polyunsaturated aldehydes on the microbial food web in temperate and polar waters)

Summary:
PUA (polyunsaturated aldehydes) experiments: Experimental Conditions, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015

cdm_data_type = Other
VARIABLES:
Experiment (unitless)
Location (unitless)
longitude (degrees_east)
latitude (degrees_north)
Date (unitless)
Temperature (degrees Celsius)
Salinity (Sea Water Practical Salinity, PSU)
Light_Dark_Cycle (unitless)
Medium (unitless)
Copepod_spp (unitless)
Number_Copepods (copepods)
Bacteria (cells per ml)
Chl_a (micrograms/liter)
Dinoflag (micrograms Carbon/liter)
Ciliate (micrograms Carbon/liter)
HepD (Hep D, nanoMolar)
HepP (Hep P, nanoMolar)
OctD (Oct D, nanoMolar)
OctP (Oct P, nanoMolar)
DecD (Dec D, nanoMolar)
DecP (Dec P, nanoMolar)
Tot (nanoMolar)


[PUA Microzooplankton Biomass] - Microzooplankton biomass estimates from PUA (polyunsaturated aldehydes) experiments, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015 (The effects of diatom-produced polyunsaturated aldehydes on the microbial food web in temperate and polar waters)

Summary:
Microzooplankton biomass estimates from PUA (polyunsaturated aldehydes) experiments, Virginia Coastal Bays and Bay of Napoli, Mar-July 2015.

cdm_data_type = Other
VARIABLES:
Experiment (unitless)
Bottle_ID (unitless)
Treatment (unitless)
Rep (unitless)
Taxa (unitless)
Phylum (unitless)
ESD (micrometers)
Biomass (micrograms carbon/liter)


[PULSE chlorophyll data] - Chlorophyll data collected in the Gulf of Maine on F/V Lady Regena (NEC-JR2001-1) from 2003-2005 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Summary:
Chlorophyll data collected in the Gulf of Maine on F/V Lady Regena (NEC-JR2001-1) from 2003-2005 (NEC-CoopRes project)

cdm_data_type = Other
VARIABLES:
year
yrday_local
time (Date Local, seconds since 1970-01-01T00:00:00Z)
station
latitude (degrees_north)
longitude (degrees_east)
depth (m)
replicate
chla_GF (Concentration Of Chlorophyll In Sea Water)
chla_8um (Concentration Of Chlorophyll In Sea Water)
phaeo_GF
phaeo_8um


[PULSE nutrients] - Nutrients: Cooperative Long-term Ecosystem Monitoring in the Gulf of Maine (PULSE) collected from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Summary:
Nutrients: Cooperative Long-term Ecosystem Monitoring in the Gulf of Maine (PULSE) collected from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine (NEC-CoopRes project)

cdm_data_type = Other
VARIABLES:
year
yrday_local
month_local
day_local
date_local
station
latitude (degrees_north)
longitude (degrees_east)
depth (m)
NO3 (microMoles)
NH4 (microMoles)
PO4 (microMoles)


[PULSE zooplankton abundance] - Zooplankton species abundance: Cooperative Long-Term Ecological Monitoring Project (PULSE), Gulf of Maine from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine, 1999-2004 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Summary:
Zooplankton species abundance: Cooperative Long-Term Ecological Monitoring Project (PULSE), Gulf of Maine from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine, 1999-2004 (NEC-CoopRes project).

cdm_data_type = Other
VARIABLES:
year
yrday_local (ddd.d)
month_local
day_local
time (Date Local, seconds since 1970-01-01T00:00:00Z)
station
latitude (degrees_north)
longitude (degrees_east)
cast
depth (m)
volfilt (cubic meters)
species
abundance


[PULSE zooplankton dry weight] - Zooplankton dry weights: Cooperative Long-term Ecological Monitoring Project (PULSE), Gulf of Maine collected from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine, 1999-2004 (NEC-CoopRes project) (Northeast Consortium: Cooperative Research)

Summary:
Zooplankton dry weights: Cooperative Long-term Ecological Monitoring Project (PULSE), Gulf of Maine collected from the F/V Lady Regena NEC-JR2001-1 from the Gulf of Maine, 1999-2004 (NEC-CoopRes project)

cdm_data_type = Other
VARIABLES:
year
cruise_id
month_local
day_local
yrday_local
time (Date Local, seconds since 1970-01-01T00:00:00Z)
station
latitude (degrees_north)
longitude (degrees_east)
cast
depth (m)
vol_filt (cubic meters)
dry_wgt (g/m^3)
dry_wgt_integ (grams/m2)


[Pump CTD Profiles] - Pump CTD profiles from the EMB276 cruise on R/V Elisabeth Mann Borgese in the Baltic Sea from September 20-27, 2021 (Collaborative Research: Manganese Cycling and Coupling Across Redox Boundaries within Stratified Basins of the Baltic Sea)

Summary:
Pump CTD profiles  include data on time, latitude, longitude, depth, h2s, o2, sulfide, pH, po4, NO3, NO2, NH4, SiO2, fluorescence, turbidity, density, temperature, and salinity from six stations in the Baltic Sea collected between September 20 - 27, 2021. Data was collected from the R/V Elisabeth Mann Borgese.

cdm_data_type = Other
VARIABLES:
cruise_name (unitless)
station_number (unitless)
station_name (unitless)
date (unitless)
time_UTC (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)
latitude (Latitude_n, degrees_north)
longitude (Longitude_e, degrees_east)
max_depth_m (meters (m))
depth (m)
H2S_uM (micromolar (µM))
O2_uM (micromolar (µM))
total_sulfide_umol_l (micromole per liter (µmol/L))
pH (unitless)
PO4_umol_l (micromole per liter (µmol/L))
NO3 (micromole per liter (µmol/L))
NO2_umol_l (micromole per liter (µmol/L))
NH4_umol_l (micromole per liter (µmol/L))
SiO2_umol_l (micromole per liter (µmol/L))
Fluor_mg_m3 (mg/m^3)
Turb_NTU (NTU)
Density_Sig_tet (unitless)
Temp_C (degrees Celsius (°C))
Salinity_PSU_ (PSU)


[Pump mesozooplankton samples] - Mesozooplankton sample data from R/V Pelican cruises PE03-NGOMEX, PE04-NGOMEX, PE06-NGOMEX, PE07-NGOMEX, PE09-05 in the Northern Gulf of Mexico from 2003-2008 (NGOMEX - Living Marine Resources of the Northern Gulf of Mexico)

Summary:
CTD casts using a high-capacity, diaphragm pump were conducted during the R/V Pelican cruises PE03-NGOMEX, PE04-NGOMEX, PE06-NGOMEX, PE07-NGOMEX, and PE09-05 in the Northern Gulf of Mexico between 2003 and 2008. Plankton samples were collected from discrete depths during the CTD casts. Subsamples of sample contents were manually counted, identified, and measured in the laboratory.

cdm_data_type = Other
VARIABLES:
ctd (unitless)
longitude (degrees_east)
latitude (degrees_north)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
d_min (minutes)
depth (m)
bottom (decibars (dbar))
s_per_50l (seconds (s))
mesh (micrometers (µm))
splits (unitless)
beaker (milliliters (ml))
aliquot (milliliters (ml))
replicate (unitless)
vol (cubic meters (m^3))
ID (unitless)
length (millimeters (mm))
width (millimeters (mm))
adj_count (unitless)
flag (unitless)


[Pump Profiler Casts - HRS1415] - Data from in situ pump profiler system collected on R/V Hugh R. Sharp cruise HRS1415 in August 2014 (The role of soluble Mn(III) in the biogeochemical coupling of the Mn, Fe and sulfur cycles)

Summary:
Data from in situ pump profiler system collected on R/V Hugh R. Sharp cruise HRS1415 in August 2014

cdm_data_type = Other
VARIABLES:
Cast (unitless)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
time_local (unitless)
time_GMT (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
depth (m)
temp (Temperature, degrees Celsius)
salinity (Sea Water Practical Salinity, unitless)
O2 (micromolar (uM))
O2_stdev (micromolar (uM))
H2Splus_HSminus (H2 Splus HSminus, micromolar (uM))
H2Splus_HSminus_stdev (H2 Splus HSminus Stdev, micromolar (uM))
Particulate_MnOx_eqvln (Particulate Mn Ox Eqvln, nanomolar (nM))
Particulate_MnOx_eqvln_stdev (Particulate Mn Ox Eqvln Stdev, nanomolar (nM))
Dissolved_MnT (Dissolved Mn T, nanomolar (nM))
Dissolved_MnT_stdev (Dissolved Mn T Stdev, nanomolar (nM))
Dissolved_Mn2plus (nanomolar (nM))
Dissolved_Mn2plus_stdev (nanomolar (nM))
Dissolved_Mn3plus (nanomolar (nM))
pcnt_Mn3 (uM or %?)
Filtered_Fe2plus (micromolar (uM))
Filtered_Fe2plus_stdev (micromolar (uM))
Unfiltered_Fe2plus (micromolar (uM))
Unfiltered_Fe2plus_stdev (micromolar (uM))
Filtered_Fe3plus (micromolar (uM))
... (5 more variables)


[PUPCYCLE 2019 incubation experiments] - Incubation experiments to assess the physiological and molecular response of subsurface phytoplankton communities to a simulation of the Upwelling Conveyor Belt Cycle (UCBC) conducted in summer 2019 onboard the R/V Oceanus (OC1905b) (CAREER: An integrated molecular and physiological approach to examining the dynamics of upwelled phytoplankton in current and changing oceans)

Summary:
The primary objective of this study was to assess the physiological and molecular response of subsurface phytoplankton communities to a simulation of the Upwelling Conveyor Belt Cycle (UCBC). To capture this phenomenon, we performed on-deck incubation experiments that spanned different time points representing the different stages of growth (initial deep-water community at T0, and stimulated growth phases at T1 and T2). We further subjected the incubations to various Fe-related treatments to test how Fe might play a role in determining their physiological and molecular response to upwelling.

The first incubation was conducted from 27 May to 01 June 2019 in a wide continental shelf, and the second incubation was conducted from 02 June to 06 June 2019 in a narrow continental shelf. For each time point, the incubation was harvested and analyzed for chlorophyll, nutrients, particulate organic carbon and nitrogen, and dissolved and particulate Fe and Sc concentrations. 6-hour incubations using trace concentrations of stable isotopes of 13C and 15N were also conducted to assess uptake kinetics of dissolved inorganic carbon (DIC) and nitrate (NO3) in bulk-size fractionated phytoplankton communities. PUPCYCLE I (Phytoplankton response to the UPwelling CYCLE) took place in summer 2019 onboard the R/V Oceanus (OC1905b), led by Chief Scientist Adrian Marchetti.

cdm_data_type = Other
VARIABLES:
Experiment (unitless)
Time_Point (unitless)
Hours (hours)
Treatment (unitless)
Replicate (unitless)
Sample_Name (unitless)
Date (unitless)
latitude (degrees_north)
longitude (degrees_east)
NO3 (micromolar (uM))
PO4 (micromolar (uM))
... (46 more variables)


[PUPCYCLE 2019 upwelling transects] - Data from samples collected at four sites experiencing upwelling off the coast of Northern California in May and June of 2019 (CAREER: An integrated molecular and physiological approach to examining the dynamics of upwelled phytoplankton in current and changing oceans)

Summary:
The primary objective of this study aims to examine and compare the dynamics of phytoplankton blooms at different stages of upwelling. We combined environmental and physiological observations to put together a narrative of phytoplankton community succession. In doing so, we postulate that the four stations sampled represent a mosaic of different stages of relatively early upwelling cycles such that they can be classified as either the initial onset of upwelling (early stage, denoted by E1) in which the subsurface community only recently transitioned to the surface, or the relatively later phases (later stage, denoted by L2, L3, and L4) where the community has just started to build up biomass and is undergoing the "shift-up" response.

Four sites experiencing upwelling were sampled off the coast of Northern California on May 30, 2019 (E1 and L2) and June 05, 2019 (L3 and L4). Seawater was collected using a CTD-Rosette sampler, at four depths throughout the euphotic zone at each station corresponding to 50%, 30%, 10%, and 1% incident irradiance. Samples for temperature, salinity, PAR, chlorophyll a, dissolved inorganic nutrients, dissolved metal micronutrients, and physiology were obtained. PUPCYCLE I (Phytoplankton response to the UPwelling CYCLE) took place in summer 2019 onboard the R/V Oceanus (OC 1905b), led by Chief Scientist Adrian Marchetti.

cdm_data_type = Other
VARIABLES:
Station (unitless)
Replicate (unitless)
depth (Depth_m, m)
Sample_Name (unitless)
Date (unitless)
latitude (degrees_north)
longitude (degrees_east)
Salinity (PSU)
Temperature (degrees Celsius)
PAR (watts per square meter (W/m^2))
NO3 (micromolar (uM))
PO4 (micromolar (uM))
... (38 more variables)


[Pushcore macrofaunal community from Southern California seeps (July 2023)] - Pushcore macrofaunal community from samples collected at methane seeps off Southern California with the HOV Alvin from July 16-27, 2023 during R/V Atlantis cruise AT50-12 (Collaborative Research: Redefining the footprint of deep ocean methane seepage for benthic ecosystems)

Summary:
Pushcore and rocks were collected at methane seeps off Southern California with the HOV Alvin from July 16-27, 2023 during R/V Atlantis cruise AT50-12 for macrofaunal analyses. This dataset provides macrofaunal community composition of pushcore samples.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Alvin_Dive (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
Sample (unitless)
Habitat (unitless)
Section (centimeters)
Organism (unitless)
Count (unitless)


[Pyrolysis-GC/MS grouped compound information] - Photodegradation of macroplastics in the marine environment: Pyrolysis-GC/MS grouped compound information (EAGER: Collaborative Research: NSF2026:  Is Plastic Degradation Occurring in the Deep Ocean Water Column?)

Summary:
The photodegradation of macroplastics in the marine environment remains poorly understood. Here, we investigated the weathering of commercially available plastics (tabs 1.3 × 4.4 × 0.16 cm), including high-density polyethylene, low-density polyethylene, polypropylene, polystyrene, and polycarbonate, in seawater under laboratory-simulated ultraviolet A radiation for 3–9 months, equivalent to 25–75 years of natural sunlight exposure without considering other confounding factors. After the exposure, the physical integrity and thermal stability of the tabs remained relatively intact, suggesting that the bulk polymer chains were not severely altered despite strong irradiation, likely due to their low specific surface area. In contrast, the surface layer (∼1 μm) of the tabs was highly oxidized and eroded after 9 months of accelerated weathering. Several antioxidant additives were identified in the plastics through low temperature pyrolysis coupled with gas chromatography/mass spectrometry (Pyr-GC/MS) analysis. The Pyr-GC/MS results also revealed many new oxygen-containing compounds formed during photodegradation, and these compounds indicated the dominance of chain scission reactions during weathering. These findings highlight the strong resistance of industrial macroplastics to weathering, emphasizing the need for a broader range of plastics with varying properties and sizes to accurately estimate plastic degradation in the marine environment.

cdm_data_type = Other
VARIABLES:
Polymer_name (unitless)
Polymer_acronym (unitless)
Incubation_time (unitless)
Unit_of_incubation_time (unitless)
Replicate (unitless)
alkene_intensity (unitless)
alkane_intensity (unitless)
ketone_intensity (unitless)
alcohol_intensity (unitless)
aromatic_intensity (unitless)
phenol_intensity (unitless)
heterocyclic_intensity (unitless)
... (5 more variables)


[qPCR assays] - Results from qPCR assays to quantify the abundance and photochemical performance of symbionts relative to coral cells in three coral species collected from colonies in southeast Florida in April and October 2019 before, during, and after heat stress tests (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications)

Summary:
This dataset contains results from assays to quantify the abundance and photochemical performance of Breviolum, Cladocopium, and Durusdinium symbionts relative to coral cells in Montastraea cavernosa, Orbicella faveolata, and Siderastrea siderea corals collected from colonies in southeast Florida in April 2019 and in October 2019, before, during and after aquarium-based experimental heat stress tests. Bulk genomic DNA was extracted from tissue scrapings taken from 2.5cm diameter cores of corals and was used as a template for symbiont genus-specific qPCR assays. The resulting CT values were used to calculate the relative abundance of each symbiont genus within each coral core over the course of the heat stress. The photochemical efficiency of each coral core was also measured periodically throughout heat stress tests using an imaging pulse amplitude modulated (I-PAM) fluorometer. The publication based on these data is Buzzoni, et al. (2023) (DOI: 10.1007/s00338-023-02428-x).

cdm_data_type = Other
VARIABLES:
Species (unitless)
Treatment (unitless)
Core (unitless)
Collection_Latitude (degrees_north)
longitude (Collection_longitude, degrees_east)
Timepoint (unitless)
Sym_Host (unitless)
Y2 (unitless)
PropD (unitless)
Batch (unitless)
Date (unitless)
Colony (unitless)


[qPCR] - Quantitative PCR data from sediment samples from MPSV GREATSHIP MANISHA IODP-347 cruise in the Baltic Sea in 2013 (IODP-347 Microbial Quantification project) (Quantifying the contribution of the deep biosphere in the marine sediment carbon cycle using deep-sea sediment cores from the Baltic Sea)

Summary:
Quantitative PCR data from sediment samples

Locations:
 Site 59C (Little Belt); Site 60B (Anholt Loch); 63E (Landsort Deep); 65C
(Bornholm Basin).
 Subsurface samples as deep as 85 meters below the Baltic Sea floor.

cdm_data_type = Other
VARIABLES:
Identifier (text)
latitude (degrees_north)
longitude (degrees_east)
Depth (meters)
Archaea_replicate_1 (copies/uL)
Archaea_replicate_2 (copies/uL)
Bacteria_replicate_1 (copies/uL)
Bacteria_replicate_2 (copies/uL)
ANME1_replicate_1 (copies/uL)
ANME1_replicate_2 (copies/uL)
MCG_replicate_1 (copies/uL)
MCG_replicate_2 (copies/uL)


[qPCR_Parameters] - Limits of detection and qPCR efficiencies from cruise SAV 17-16 in the South Atlantic Bight aboard the R/V Savannah from 2011 to 2017 (Collaborative Research: Direct Oxidation of Organic Nitrogen by Marine Ammonia Oxidizing Organisms)

Summary:
This dataset contains the results of analyses related to ammonia oxidation rates, including oxidation rates of 15N supplied as ammonia, urea, 1,2 diamino ethane, 1,3 diamino propane, 1,4 diamino butane (putrescine), arginine and glutamate. Ancillary data including nutrient concentrations and the abundance of ammonia- and nitrite-oxidizing microorganisms are also reported. The samples analyzed to produce the dataset were collected off the coast of Georgia, USA. Most data were collected on one cruise in August 2017, incidental data from 2011, 2013 and 2016 are also reported.

cdm_data_type = Other
VARIABLES:
qPCR_Parameters (Q PCR Parameters, unitless)
Probe (unitless)
Forward_primer (unitless)
Reverse_primer (unitless)
Cycling_conditions (unitless)
Efficiency (unitless)
Limit_of_Detection_template (copies per microliter of template)
Limit_of_Detection_sample (copies per liter of sample)
Number_plates_run (count)
Reference (unitless)


[Quadrat counts] - Quadrat species counts and measurements along the Northern Central California coast from 2017 to 2021 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath)

Summary:
Quadrat species counts and measurements collected concurrently with habitat complexity photos along the Northern Central California coast from 2017 to 2021.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Site_Code (unitless)
Area_Number (unitless)
Sector (unitless)
Quadrat_Waypoint (unitless)
latitude (degrees_north)
longitude (degrees_east)
Quadrat_Area (square meters (m^2))
Species (per individual)
n (per individual)
Tube_Number (unitless)
Primary_Measurement_Size (millimeters (mm))
Primary_Measurement_description (unitless)
Secondary_Measurement_Size (millimeters (mm))
Secondary_Measurement_description (unitless)
Notes (unitless)
Photo_ID (unitless)


[Quadrat data] - Quadrat sampling information along the Northern Central California coast from 2017 to 2021 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath)

Summary:
Quadrat sampling information collected concurrently with habitat complexity photos along the Northern Central California coast from 2017 to 2021.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Site_Code (unitless)
Area_Number (unitless)
Sector (unitless)
Quadrat_Waypoint (unitless)
latitude (degrees_north)
longitude (degrees_east)
Quadrat_Area (square meters (m^2))
GPS_Name (unitless)
Site (unitless)
Start_Time (unitless)
Quadrat_Notes (unitless)
Most_common_substrate (unitless)
Second_most_common_substrate (unitless)
Quadrat_Photo (unitless)
GPS_Accuracy (meters (m))
Person (unitless)
time (Quadrat_start_datetime_utc, seconds since 1970-01-01T00:00:00Z)


[Qualitative biodiversity survey of corals in Palau] - Community composition of corals in Palau determined by a qualitative survey conducted in 2021-2022 (Collaborative Research: How do selection, plasticity, and dispersal interact to determine coral success in warmer and more variable environments?)

Summary:
Bottlenecks in the early life-history stages of corals can shape community composition across reefs. We used photographic surveys and the deployment of tiles to capture recruit, juvenile, and adult corals at 7 sites across Palau. Photographic surveys were undertaken using two methods: a qualitative biodiversity survey (2021–2022) and quantitative transects (2023). This dataset includes the results from the biodiversity survey.

cdm_data_type = Other
VARIABLES:
Site (unitless)
Latitude (degrees_north)
longitude (degrees_east)
Type (unitless)
Stage (unitless)
Genus (unitless)
Abundance (count of individuals)


[Quantification of ciliated band length per unit protein in early echinoderm larvae: biometirc data] - Quantification of ciliated band length per unit protein in early echinoderm larvae (biometirc data), collected between 2020 and 2022 in the laboratory at California State University, Long Beach. (RUI: Effects of large inedible particles on larval feeding, planktonic larval duration, and juvenile quality in marine invertebrates)

Summary:
This experiment compares the ciliated band length to the protein content of eight species of echinoderm larvae. The data was collected between 2020 and 2022 in the laboratory at California State University, Long Beach.

cdm_data_type = Other
VARIABLES:
Species (unitless)
Age (days)
Dev (unitless)
Beaker (unitless)
Larva (unitless)
cbl (mm)
bl (mm)
sl (mm)
sw (mm)
sa (square millimeter (mm^2))
mpo (mm)
po1 (mm)
po2 (mm)
geospatial_bound_N (degrees_north)
geospatial_bound_S (degrees_north)
geospatial_bound_E (degrees_east)
geospatial_bound_W (degrees_east)
experiment_location_lat (degrees_north)
experiment_location_long (degrees_east)
experiment_start (unitless)
experiment_end (unitless)


[Quantification of ciliated band length per unit protein in early echinoderm larvae: protein data] - Quantification of ciliated band length per unit protein in early echinoderm larvae (protein data), collected between 2020 and 2022 in the laboratory at California State University, Long Beach. (RUI: Effects of large inedible particles on larval feeding, planktonic larval duration, and juvenile quality in marine invertebrates)

Summary:
This experiment compares the ciliated band length to protein content of eight species and the protein content of the larvae. The data was collected between 2020 and 2022 in the laboratory at California State University, Long Beach.

cdm_data_type = Other
VARIABLES:
Species (unitless)
Age (days)
Dev (unitless)
Beaker (unitless)
Sample (unitless)
Average (nanograms (ng))
sd (unitless)
geospatial_bound_N (degrees_north)
geospatial_bound_S (degrees_north)
geospatial_bound_E (degrees_east)
geospatial_bound_W (degrees_east)
experiment_location_lat (degrees_north)
experiment_location_long (degrees_east)
experiment_start (unitless)
experiment_end (unitless)


[Quantitative PCR data] - Quantitative PCR data from samples collected on the R/V Sarmiento de Gamboa cruise in the subtropical North Atlantic Ocean between January and March 2011 (Microbial associations in zooplankton project) (Microbial associations in zooplankton: significance for the marine nitrogen cycle)

Summary:
Quantitative PCR data from samples collected on the R/V Sarmiento de Gamboa cruise in the subtropical North Atlantic Ocean between January and March 2011 (Microbial associations in zooplankton project)

cdm_data_type = Other
VARIABLES:
project (unitless)
date (unitless)
time2 (Time, unitless)
station (unitless)
latitude (degrees_north)
longitude (degrees_east)
number (unitless)
size_fraction (microns)
UCYN_A (genes per liter)
Gamma_24774A11 (Gamma 24774 A11, genes per liter)
group_B (genes per liter)
Tricho (genes per liter)
Het1 (genes per liter)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[rad_sed_core] - Radionuclides sediment cores collected on the R/V Thomas G. Thompson cruise TT013 in the Equatorial Pacific in 1992 during the U.S. JGOFS Equatorial Pacific (EqPac) project (U.S. JGOFS Equatorial Pacific)

Summary:
This dataset reports measurements of radionuclides detected in sediment core samples collected on the R/V Thomas G. Thompson cruise TT013 in the Equatorial Pacific in 1992 during the U.S. JGOFS Equatorial Pacific (EqPac) project.

cdm_data_type = Other
VARIABLES:
event (unitless)
sta (unitless)
latitude (degrees_north)
longitude (degrees_east)
core_type (unitless)
depth_core (centimeters)
U238 (dpm/gram)
U238_err (dpm/gram)
Th232 (dpm/gram)
Th232_err (dpm/gram)
Th230 (dpm/gram)
Th230_err (dpm/gram)
Pa231 (dpm/gram)
Pa231_err (dpm/gram)
Be10 (atoms/gram)
Be10_err (atoms/gram)
CaCO3 (percent)
opal (percent)
C14_age (years)
C14_age_err (years)


Summary:
This dataset reports measurements of radionuclides detected in sediment core samples collected on the R/V Thomas G. Thompson cruise TT013 in the Equatorial Pacific in 1992 during the U.S. JGOFS Equatorial Pacific (EqPac) project.

cdm_data_type = Other
VARIABLES:
event (unitless)
sta (unitless)
latitude (degrees_north)
longitude (degrees_east)
core_type (unitless)
depth_water (meters)
depth_core (centimeters)
U238 (dpm/gram)
U238_err (dpm/gram)
Th232 (dpm/gram)
Th232_err (dpm/gram)
Th230 (dpm/gram)
Th230_err (dpm/gram)
Pa231 (dpm/gram)
Pa231_err (dpm/gram)
Be10 (atoms/gram)
Be10_err (atoms/gram)
CaCO3 (percent)
opal (percent)
C14_age (years)
C14_age_err (years)


[Radiocarbon ages for Guaymas Basin and Sonora Margin sediments] - Radiocarbon [14C] ages of sedimentary organic matter and sedimentation rates for Guaymas Basin and Sonora Margin sediments collected from R/V El Puma, leaving Guaymas on October 14, 2014 and returning to Mazatlan on October 27, 2014 (RAPID proposal: Site characterization cruise to document the active and extensive subsurface biosphere in the Guaymas Basin)

Summary:
Radiocarbon [14C] ages of sedimentary organic matter and sedimentation rates for Guaymas Basin and Sonora Margin sediments collected from R/V El Puma (the Pacific Coast research vessel of the Autonomous University of Mexico) from October 14, 2014 to October 27, 2014.

cdm_data_type = Other
VARIABLES:
Core (unitless)
Depth_in_core (Depth, centimters (cm))
C14_age (years before present (ybp))
C14_age_uncertainty (+/- years before present (ybp))
Calendar_age (years before present (ybp))
Sed_Rate (millimeters per year (mm/year))


[radionuclide uptake by humic acids] - Experimental observations of radionuclide uptake by colloidal and particulate humic acids obtained from 14 soils collected worldwide (Biopolymers as carrier phases for selected natural radionuclides (of Th, Pa, Pb, Po, Be) in diatoms and coccolithophores)

Summary:
The uptake and binding of six particle-reactive and/or redox-sensitive radionuclides (210Pb, 234Th, 7Be, 59Fe, 237Np and 233Pa) with different organic functionalities of three size fractions.

cdm_data_type = Other
VARIABLES:
No (unitless)
HA_ID (unitless)
Site (unitless)
Soil_Order (unitless)
Land_use (unitless)
Sample_ID (unitless)
part_210Pb (Part 210 Pb, unitless)
part_234Th (Part 234 Th, unitless)
part_7Be (Part 7 Be, unitless)
part_59Fe (Part 59 Fe, unitless)
part_237Np (Part 237 Np, unitless)
part_233Pa (Part 233 Pa, unitless)
col_210Pb (Col 210 Pb, unitless)
col_234Th (Col 234 Th, unitless)
col_7Be (Col 7 Be, unitless)
col_59Fe (Col 59 Fe, unitless)
col_237Np (Col 237 Np, unitless)
col_233Pa (Col 233 Pa, unitless)
logKd_210Pb (Log Kd 210 Pb, unitless)
logKd_234Th (Log Kd 234 Th, unitless)
logKd_7Be (Log Kd 7 Be, unitless)
logKd_59Fe (Log Kd 59 Fe, unitless)
logKd_237Np (Log Kd 237 Np, unitless)
logKd_233Pa (Log Kd 233 Pa, unitless)
logKdc_210Pb (Log Kdc 210 Pb, unitless)
logKdc_234Th (Log Kdc 234 Th, unitless)
... (12 more variables)


[RADseq data from Atlantic silversides used for linkage and QTL mapping] - RADseq data from Atlantic silversides used for linkage and QTL mapping. (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline)

Summary:
ddRADseq data from 568 Atlantic silversides (Menidia menidia) that are either F1 or F2 offspring to wild-caught parents from Georgia and New York used in a controlled breeding experiment. The data were used to build linkage maps for each of the separate populations and their inter-population cross, and to perform quantitative trait locus mapping.

cdm_data_type = Other
VARIABLES:
bioproject_accession (units)
biosample_accession (units)
taxonomic_name (units)
mother_f0_sampling_location (units)
lat_mother (degrees_north)
lon_mother (degrees_east)
father_f0_sampling_location (units)
lat_father (degrees_north)
lon_father (degrees_east)
SRA_study_accession (units)
SRA_experiment_accession (units)
SRA_run_accession (units)
library_ID (units)
title (units)
library_strategy (units)
library_source (units)
library_selection (units)
library_layout (units)
platform (units)
instrument_model (units)
design_description (units)
filetype (units)
sample_name (units)
filename (units)


[Rainfall and surface light intensity] - Measurements of rainfall and surface light intensity (PAR) in St. John, US Virgin Islands from 2014-2017. (Collaborative research: Ecology and functional biology of octocoral communities)

Summary:
Data supporting publication through measurements of rainfall on St. John and surface light adjacent to Lameshur Bay. These data describe rainfall on the north shore of St. John as measured by R. Boulon using a manual rain gauge.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Month (unitless)
Rainfall (centimeters per month)
SurfaceLight_Mean (Surface Light Mean, umol photons per square meter per day)
SurfaceLight_SE (Surface Light SE, umol photons per square meter per day)


[Rainfall and temperature data] - Rainfall and seawater temperature in St. John, USVI in 1987–2013 (St. John LTREB project, VI Octocorals project). (LTREB Long-term coral reef community dynamics in St. John, USVI: 1987-2019)

Summary:
Temperature and rainfall data for St. John USVI.

cdm_data_type = Other
VARIABLES:
year (unitless)
rainfall (centimeters)
temp_seawaterSurface (Temp Seawater Surface, celsius)
temp_min (celsius)
temp_max (celsius)
hotDays_num (Hot Days Num, count)
coldDays_num (Cold Days Num, count)


[Rapid Light Curves_PAM] - Measurements of fluorescence of photosystem II in Plocamium cartilagineum under various and pCO2 and temperature conditions (Ocean Acidification: Scope for Resilience to Ocean Acidification in Macroalgae)

Summary:
This dataset includes photosynthetic pigment concentrations in Plocamium cartilagineum grown under various temperatures and CO2 levels, from July 2014 to February 2015. The parameters reported are: the concentrations of Chlorophyll a, Phycoerythrin, Phycocyanin, Allophycocyanin, and total Phycobiliprotein, and the ratio of total Phycobiliprotein to Chlorophyll A.

cdm_data_type = Other
VARIABLES:
Trial (unitless)
Tank_ID (unitless)
pCO2 (P CO2, atm)
Temp (Temperature, degrees Celsius (°C))
Plant_ID (unitless)
ID (unitless)
Week (unitless)
date (unitless)
light (micromole photons/meter^2/second ( µmole photons . m^-2 . s^-1))
F (unitless)
Fm (unitless)
Yield (unitless)
rETR (R ETR, unitless)
qP (Q P, unitless)
qN (Q N, unitless)
NPQ (unitless)


[Raw patterns] - Sex ratio and GSI data for M. beryllina collected offshore of Pt. Lobos, California from 2009 to 2010. (Impacts of size-selective mortality on sex-changing fishes)

Summary:
Sex ratio and GSI data for M. beryllina collected offshore of Pt. Lobos, California from 2009 to 2010.

cdm_data_type = Other
VARIABLES:
Investigator (unitless)
Site (unitless)
Date (unitless)
MeanGSI (Mean GSI, count)
Fs (count)
Ms (count)
Total (count)


[RECHARGE 2018 - 2020 Microbiome Data] - Sequence read accession (SRA) numbers and collection metadata for coral microbiome collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 (Collaborative Research: Tipping points in coral reefs and their associated microbiomes: interactive effects of herbivory, nutrient enrichment, and temperature)

Summary:
This dataset contains the complete sample information for the 16S rRNA gene V4 region amplicon sequencing data associated with the NCBI SRA accession from BioProject PRJNA994532. All raw sequencing data can be found at this publicly available NCBI SRA BioProject.

The associated samples were collected from an in situ coral manipulative experiment in Moorea, French Polynesia between 2018-2020 from Acropora retusa, Porites lobata, and Pocillopora spp. Data collection was a multi-university collaborative effort between the Vega Thurber Laboratory,  at Oregon State University during the time of the experiment, and the Burkepile Community Ecology Laboratory at UC Santa Barbara. The experiment, conducted on the fore reef on the north shore of the island, evaluated the interaction of consumer pressure level (termed "Herbivory" in the dataset and in Vompe et al., 2023) and nutrient enrichment on coral microbiome composition and host success. The experiment also captured two severe and sequential marine heatwaves in 2019 and 2020. This experiment aimed to  evaluate whether managing local inputs, including water column nutrient levels and fishing regimes, interacts with heat stress to affect coral success. Coral microbiomes were sampled as these microbial communities are known to interact with host health during heat stress. The data herein correspond to the microbiomes of the sampled corals.

cdm_data_type = Other
VARIABLES:
Sample (unitless)
Date_MonthYear (unitless)
Coral_Code (unitless)
Herbivory (unitless)
Nutrients (unitless)
Plot (unitless)
Tag (unitless)
Batch (unitless)
Run (unitless)
AssayType (unitless)
AvgSpotLen (unitless)
Bases (unitless)
... (32 more variables)


[RECHARGE 2018 - 2020 Microbiome Host Bleaching and Mortality Data] - Microbiome Host Bleaching and Mortality Data for coral hosts collected in Moorea, French Polynesia from Jul 2018 to Aug 2020 (Collaborative Research: Tipping points in coral reefs and their associated microbiomes: interactive effects of herbivory, nutrient enrichment, and temperature)

Summary:
This dataset contains bleaching and mortality levels for the coral hosts associated with the 16S rRNA gene V4 region amplicon sequencing data, NCBI SRA accession from BioProject PRJNA994532. Orthorectified photomosaics were assembled from photos taken of experimental plots from an in situ coral manipulative experiment in Moorea, French Polynesia between 2018-2020. Partial bleaching and mortality was assigned from these photomosaics to Acropora retusa, Porites lobata, and Pocillopora spp. coral colonies associated with the microbiome sampling described above, whenever possible. Data collection was a multi-university collaborative effort between the Vega Thurber Laboratory, at Oregon State University during the time of the experiment, and the Burkepile Community Ecology Laboratory at UC Santa Barbara.

The experiment, conducted on the fore reef on the north shore of the island, evaluated the interaction of consumer pressure level (termed "Herbivory" in the dataset and in Vompe et al., 2023) and nutrient enrichment on coral microbiome composition and host bleaching and mortality. The experiment also captured two severe and sequential marine heatwaves in 2019 and 2020. This experiment aimed to evaluate whether managing local inputs, including water column nutrient levels and fishing regimes, interacts with heat stress to affect coral success. Coral colony partial bleaching and partial mortality data were collected for hosts sampled for microbiome analyses, because we aimed to correlate microbiome changes to changes in host phenotypes.

cdm_data_type = Other
VARIABLES:
Sample (unitless)
Date (unitless)
Coral (unitless)
Herbivory (unitless)
Nutrients (unitless)
Plot (unitless)
Tag (unitless)
Run (unitless)
Colony (unitless)
percent_bleached (percent)
percent_dead (percent)


[Reciprocal transplant expt. - ecological survey] - Coral colony sizes and conditions, of three species of the Orbicella complex (Orbicella annularis, O. faveolata and O. franksi) in two donor sites of a reciprocal transplant experiment, Varadero and Punta Brava, 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

Summary:
This dataset contains the primary data of the bathymetric survey of three species of the Orbicella complex (Orbicella annularis, O. faveolata and O. franksi). The surveys were performed in two donor sites of a reciprocal transplant experiment:  Varadero and Punta Brava. The number of colonies and some physiological traits recorded on a belt transect deployed perpendicular to the reef slope at a series of depths are reported.

cdm_data_type = Other
VARIABLES:
Site (unitless)
depth (m)
Transect (unitless)
taxon_code (unitless)
diam_max (centimeters)
diam_min (centimeters)
height (centimeters)
mortality_old (unitless)
mortality_new (unitless)
mortality_total (unitless)


[Reciprocal transplant expt. - irradiance and light attenuation 2017] - Irradiance and estimated light attenuation coefficient, Kd, underwater and onshore in Varadero Reef, 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

Summary:
This dataset contains the primary data of irradiance recorded underwater and onshore and the estimated light attenuation coefficient, Kd, based on these data in Varadero Reef. The irradiance recorded synchronously onshore and underwater were used to estimate the variability of the light attenuation coefficient (Kd) resulting from temporal variation of the optical properties of water.

cdm_data_type = Other
VARIABLES:
Date (unitless)
time2 (Time, unitless)
DateTimeLocal (Date Time Local, unitless)
Irradiance_uw (micromol quanta meter^-2 second^-1)
Irradiance_onshore (micromol quanta meter^-2 second^-1)
Kd_est (meter^-1)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Reciprocal transplant expt. - Photosynthetic parameters] - Photosynthesic parameters (calculated alpha, Pmax, Respiration, Ek and Ec) for each P-E curve for coral Orbicella faveolata from Rosaria and Varadero reef sites and Cartagena Bay, Colombia, 2016 and 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

Summary:
This dataset contains the results of the photosynthetic parameters calculated based on the analysis of the P-E curves from coral fragment of the species Orbicella faveolata used in the transplant experiment between three sites: Varadero (10\u00b018'23.3\N, 75\u00b035'08.0\W), Rosario (10\u00b011'12.1\N, 75\u00b044'43.0\W) and Abanico (10\u00b018'5.80\N, 75\u00b034'37.10\W). The tag number/color of each fragment, the date of data collection, and the sites of origin and destination are specified.

cdm_data_type = Other
VARIABLES:
Source_site (unitless)
Tag_num (unitless)
Tag_color (unitless)
Destination_site (unitless)
Data_Timepoint (unitless)
Date_collected (unitless)
Area_cm2 (centimeter^2)
Chl_a (Concentration Of Chlorophyll In Sea Water, milligrams Chla meter^-2)
D_675 (unitless)
a_star_675 (meters^2 milligram Chla^-1)
alpha (mol Oxygen mol quanta^-1)
Ec (micromol quanta meter^-2 second^-1)
Ek (micromol quanta meter^-2 second^-1)
Rd (micromol Oxygen meter^-2 second^-1)
Pmax (micromol Oxygen meter^-2 second^-1)


[Reciprocal transplant expt. - PSII of random colonies] - Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on random coral colonies of Orbicella faveolata from Varadero and Rosario reefs, Colombia, May 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

Summary:
Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (\u0394F/Fm') and at dusk (Fv/Fm) on random coral colonies of Orbicella faveolata for a reciprocal transplant experiment, from Varadero and Rosario reefs, Colombia, May 2017

cdm_data_type = Other
VARIABLES:
Date (unitless)
time2 (Time, unitless)
Type (unitless)
Site (unitless)
Colony (unitless)
F (unitless)
Fm_prime (unitless)
Yield_PSII (unitless)
depth (m)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Reciprocal transplant expt. - PSII of transplanted corals] - Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata, transplanted from Varadero and Rosario reefs, Colombia, May 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)

Summary:
Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (\u0394F/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata. Coral fragments were transplanted from Varadero and Rosario reefs to Varadero reef, Rosario reef, or Cartagena Bay, Colombia, May 2017.

cdm_data_type = Other
VARIABLES:
Date (unitless)
time2 (Time, unitless)
Type (unitless)
Frag (unitless)
Tag_color (unitless)
Source_site (unitless)
Destination_site (unitless)
F (unitless)
Fm_prime (unitless)
Yield_PSII (unitless)
depth (m)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Reciprocal transplants] - Data from reciprocal transplant experiments conducted on Porites coral collected on Palau in December 2012 (Toward Predicting the Impact of Ocean Acidification on Net Calcification by a Broad Range of Coral Reef Ecosystems: Identifying Patterns and Underlying Causes)

Summary:
Data from reciprocal transplant experiments conducted on Porites coral collected on Palau in December 2012.

cdm_data_type = Other
VARIABLES:
coral_id (unitless)
transplant_duration (months)
original_omegaAR (Original Omega AR, unitless)
transplant_omegaAR (Transplant Omega AR, unitless)
treatment_code (unitless)
calc_rate (milligrams per square centimeter per month (mg/cm2/month))
status (unitless)


[reconstructed genomes] - Reconstructed genomes from North Pond, western flank of the Mid-Atlantic Ridge, from 2012-2014 (Collaborative Research: Characterization of Microbial Transformations in Basement Fluids, from Genes to Geochemical Cycling)

Summary:
Reconstructed genomes from North Pond

cdm_data_type = Other
VARIABLES:
bioproject_id (unitless)
Assembly (unitless)
Level (unitless)
WGS (unitless)
BioSample (Bio Sample, unitless)
Isolate (unitless)
Taxonomy (unitless)


[Recoveries and partition coefficients] - Po, Pb and Be partition coefficients on nanoparticles from laboratory experiments (Biopolymers as carrier phases for selected natural radionuclides (of Th, Pa, Pb, Po, Be) in diatoms and coccolithophores)

Summary:
Laboratory sorption experiments were carried out to examine the adsorption of 210Po, 210Pb and 7Be and their fractionation on inorganic nanoparticles, including SiO2,CaCO3, Al2O3, TiO2 and Fe2O3, in the presence or absence of macromolecular organic compounds (MOCs) that include humic acids (HA), acid polysaccharides (APS) and proteins (BSA), in natural seawater.

cdm_data_type = Other
VARIABLES:
System (unitless)
Organic_nanoparticle (unitless)
Inorganic_nanoparticle (unitless)
Pb210_recovery (unitless)
err_Pbrec (unitless)
Be7_recovery (unitless)
err_Berec (unitless)
Po210_recovery (unitless)
err_Porec (unitless)
Partition_coefficient_of_210Pb_Kc (Partition Coefficient Of 210 Pb Kc, 10^4 Liters per Kilogram (L/kg))
err_Kc_Pb (10^4 Liters per Kilogram (L/kg))
Partition_coefficient_of_7Be_Kc (Partition Coefficient Of 7 Be Kc, 10^4 Liters per Kilogram (L/kg))
err_Kc_Be (10^4 Liters per Kilogram (L/kg))
Partition_coefficient_of_210Po_Kc (Partition Coefficient Of 210 Po Kc, 10^4 Liters per Kilogram (L/kg))
err_Kc_Po (10^4 Liters per Kilogram (L/kg))


[Recruit area measurements] - Area of Orbicella faveolata recruits hosting different proportions of various symbiont genera from a symbiont acquisition laboratory experiment conducted in 2018 and 2019 (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications)

Summary:
This dataset includes area (mm2) of Orbicella faveolata recruits hosting different proportions of various symbiont genera.

These data correspond to research presented in Williamson et al. (2021), published in Coral Reefs and funded in part by the NSF project "Symbiont Shifts on Reefs". They were used to test if Orbicella faveolata recruits could establish symbiosis with D. trenchii supplied by nearby “donor” colonies and examined the resulting ecological trade-offs to evaluate early Symbiodiniaceae manipulation as a scalable tool for reef restoration. We exposed aposymbiotic recruits to 29 °C or 31 °C and to fragments of Montastraea cavernosa (containing Cladocopium ITS2 type C3) or Siderastrea siderea (containing D. trenchii). Next, a subset of recruits were exposed to a 60-day heat stress. These data include survivorship and symbiont acquisition rates, symbiont identity and density data (derived using qPCR), polyp area measurements, and scoring of bleaching and survivorship during a heat stress experiment. Overall, proportion of D. trenchii hosted was negatively correlated with polyp size and symbiont density, indicating a trade-off between growth (of both host and symbiont) and heat tolerance. These findings suggest that, while donor colonies may be effective sources for seeding coral recruits with thermotolerant symbionts, practitioners will need to balance the likely benefits and costs of these approaches when designing restoration strategies.

cdm_data_type = Other
VARIABLES:
Date_of_Photo (unitless)
Image_Name (unitless)
Tank (unitless)
Adult (unitless)
Temp (unitless)
Area_mm2 (square millimeters (mm2))


[Recruit qPCR data] - qPCR data for Orbicella faveolata recruits throughout a symbiont acquisition laboratory experiment conducted in 2018 and 2019 (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications)

Summary:
qPCR data for Orbicella faveolata recruits throughout symbiont acquisition laboratory experiment. Includes proportion of different Symbiodinaceae genera hosted, and symbiont-to-host cell ratios (symbiont density).

These data correspond to research presented in Williamson et al. (2021), published in Coral Reefs and funded in part by the NSF project "Symbiont Shifts on Reefs". They were used to test if Orbicella faveolata recruits could establish symbiosis with D. trenchii supplied by nearby “donor” colonies and examined the resulting ecological trade-offs to evaluate early Symbiodiniaceae manipulation as a scalable tool for reef restoration. We exposed aposymbiotic recruits to 29 °C or 31 °C and to fragments of Montastraea cavernosa (containing Cladocopium ITS2 type C3) or Siderastrea siderea (containing D. trenchii). Next, a subset of recruits were exposed to a 60-day heat stress. These data include survivorship and symbiont acquisition rates, symbiont identity and density data (derived using qPCR), polyp area measurements, and scoring of bleaching and survivorship during a heat stress experiment. Overall, proportion of D. trenchii hosted was negatively correlated with polyp size and symbiont density, indicating a trade-off between growth (of both host and symbiont) and heat tolerance. These findings suggest that, while donor colonies may be effective sources for seeding coral recruits with thermotolerant symbionts, practitioners will need to balance the likely benefits and costs of these approaches when designing restoration strategies.

cdm_data_type = Other
VARIABLES:
Sample (unitless)
tank (unitless)
temp (unitless)
adult (unitless)
days (days)
Coral_CT_mean (unitless)
A_CT_mean (unitless)
B_CT_mean (unitless)
C_CT_mean (unitless)
... (15 more variables)


[Recruit survivorship and symbiont acquisition] - Survivorship and proportion of recruits infected with Symbiodiniaceae over time during a symbiont acquisition laboratory experiment conducted in 2018 and 2019 (Collaborative Research: Assessing the changing symbiotic milieu on Caribbean coral reefs under climate change: magnitude, tradeoffs, interventions, and implications)

Summary:
Survivorship and proportion of recruits infected with Symbiodiniaceae over time during a symbiont acquisition laboratory experiment.

These data correspond to research presented in Williamson et al. (2021), published in Coral Reefs and funded in part by the NSF project "Symbiont Shifts on Reefs". They were used to test if Orbicella faveolata recruits could establish symbiosis with D. trenchii supplied by nearby “donor” colonies and examined the resulting ecological trade-offs to evaluate early Symbiodiniaceae manipulation as a scalable tool for reef restoration. We exposed aposymbiotic recruits to 29 °C or 31 °C and to fragments of Montastraea cavernosa (containing Cladocopium ITS2 type C3) or Siderastrea siderea (containing D. trenchii). Next, a subset of recruits were exposed to a 60-day heat stress. These data include survivorship and symbiont acquisition rates, symbiont identity and density data (derived using qPCR), polyp area measurements, and scoring of bleaching and survivorship during a heat stress experiment. Overall, proportion of D. trenchii hosted was negatively correlated with polyp size and symbiont density, indicating a trade-off between growth (of both host and symbiont) and heat tolerance. These findings suggest that, while donor colonies may be effective sources for seeding coral recruits with thermotolerant symbionts, practitioners will need to balance the likely benefits and costs of these approaches when designing restoration strategies.

cdm_data_type = Other
VARIABLES:
tank (unitless)
temp (unitless)
adult (unitless)
days (days)
survivorship (unitless)
proportion_infected (unitless)


[Reef Fish Genetic Accessions 2019] - Reef Fish genetic accession numbers at NCBI Genbank (Origins of Hawaiian Reef Fishes)

Summary:
Reef Fish genetic accession numbers at NCBI Genbank.

cdm_data_type = Other
VARIABLES:
Species_Name (unitless)
Sequence_Description (unitless)
Collection_Location (unitless)
Sequence_Analysis_Method (unitless)
Journal_Publications (unitless)
Journal_Publication_DOI (unitless)
Genbank_Accession_Range (unitless)


[Reef observations during lionfish behavior surveys] - General information about lionfish density and envrionmental conditions in Eleuthera, Bahamas from July to August in 2012 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)

Summary:
General information about lionfish density and envrionmental conditions in Eleuthera, Bahamas from July to August in 2012

cdm_data_type = Other
VARIABLES:
time_period (unitless)
date (unitless)
reef (unitless)
site_size (meters)
max_lionfish_number (count)
max_lionfish_density (max count per site area)
prey_density (count per meter)
cloud_cover (Cloud Area Fraction, percent)
current (unitless)


[Reef organism growth in response to SGD] - Reef organism growth from in-situ experiments with submarine groundwater discharge (SGD) exposure treatments conducted in Mo'orea, French Polynesia in 2022 and 2023 (RUI: Collaborative Research: Defining the biogeochemical context and ecological impacts of submarine groundwater discharge on coral reefs)

Summary:
This dataset contains reef organism growth data in response to submarine groundwater discharge (SGD) from the study described below. See the "Related Datasets" section or the project page for other data collected as part of this study.

Study description:

Coral reefs experience numerous environmental gradients affecting organismal physiology and species biodiversity, which ultimately impact community metabolism. This study shows that submarine groundwater discharge (SGD), a common natural environmental gradient in coastal ecosystems associated with decreasing temperatures, salinity, and pH with increasing nutrients, has both direct and indirect effects on coral reef community metabolism by altering individual growth rates and community composition. Our data revealed that SGD exposure hindered growth of two algae, Halimeda opuntia and Valonia fastigiata, by 67% and 200%, respectively, and one coral, Porites rus, by 20%. Community metabolic rates showed altered community production, respiration, and calcification driven by differences in community identity (i.e., species composition) between naturally high and low exposure areas, rather than a direct SGD effect. Production and calcification were 1.5 and 6.5 times lower in assemblages representing high SGD communities, regardless of environment. However, the compounding effect of community identity and SGD exposure on respiration resulted in the low SGD community exhibiting the highest respiration rates under higher SGD exposure. By demonstrating SGD's role in altering community composition and metabolism, this research highlights the critical need to consider compounding environmental gradients (i.e., nutrients, salinity, and temperature) in the broader context of ecosystem functions.

cdm_data_type = Other
VARIABLES:
SpeciesID (unitless)
DaysInSitu (days)
AT (unitless)
ET (unitless)
growthrate (mg per g per day  (mg g-1 d-1))
SA (square centimeters (cm2))
FullSp (unitless)
Location (unitless)


[Reef seawater biogeochemistry from the Jardines de la Reina reef-system] - Reef seawater biogeochemistry data from samples collected in the Jardines de la Reina reef-system, Cuba in November of 2017 (Signature exometabolomes of Caribbean corals and influences on reef picoplankton)

Summary:
Reef depth and reef surface seawater samples were collected from reefs in Jardines de la Reina and subjected to targeted and untargeted liquid chromatography mass spectrometry (LC-MS) methods in addition to a suite of biogeochemical measurements (inorganic and organic nutrient concentrations, microbial cell abundances, chlorophyll a concentrations, and physicochemical properties).
Raw and .mzML data files from the LC-MS methods are located at MetaboLights database, using accession number MTBLS1820. The link is: https://www.ebi.ac.uk/metabolights/MTBLS1820/.

These data were published in Weber et al. (2020).

cdm_data_type = Other
VARIABLES:
reef (unitless)
site (unitless)
date (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
biome (unitless)
sampling_depth (unitless)
grouping (unitless)
DOC (micro molar (uM))
DN (micro molar (uM))
TOC (micro molar (uM))
TN (micro molar (uM))
Pro (cells per mL)
Syn (cells per mL)
Pico (cells per mL)
Hbact (cells per mL)
Totalcells (cells per mL)
PO4 (micro molar (uM))
SI (micro molar (uM))
... (11 more variables)


[Reef surveys before SCTLD (2018 and 2020)] - Benthic community data from surveys of reefs in southwestern Puerto Rico during 2018 and 2020 (RAPID: MICROBIOME AND POPULATION DYNAMICS IN SCLERACTINIAN CORAL TISSUE LOSS DISEASE INFECTED CORALS IN PUERTO RICO)

Summary:
This data set consists of benthic community surveys from reefs in southwestern Puerto Rico. The surveys occurred during 2018 and 2020 at various shallow depths (3-, 4-, 10-, 15-meters) in the reefs Turrumote 2, Romero, Guilligan Is, Guanica Bay, Cayo Coral, and Punta Guanica. The methodology used in the field was the line transect method.

To understand the community changes caused by Stony Coral Tissue Loss Disease (SCTLD), a baseline is needed before the advent of the disease. These benthic coverage data composed of different coral species, algae, and other substrata will serve as the baseline information and were collected by Dr. Ernesto Weil of the Department of Marine Sciences, University of Puerto Rico at Mayaguez.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Date (unitless)
Locality (unitless)
latitude (degrees_north)
longitude (degrees_east)
Reef_Number (unitless)
Transect (unitless)
depth (m)
Depth_code (unitless)
Group (unitless)
Genera (unitless)
Species_code (unitless)
Species_name (unitless)
Raw_data (centimeters (cm))
linear_cover (centimeters (cm))
percent_cover (percentage (%))


[Reference samples: carbon nitrogen and isotopes] - Reference carbon and nitrogen concentrations, and isotope ratios from alfalfa, nylon-6, bovine liver, and enriched alanine (Toward an Improved Understanding of Blue Carbon: The Role of Seagrasses in Sequestering CO2)

Summary:
This dataset includes results of carbon and nitrogen analyses on reference materials including alfalfa, nylon-6, bovine liver, and enriched alanine. The reference materials were analyzed for Carbon, Nitrogen, delta-13C, and delta-15N by the Stable Isotope Facility, U.C. Davis using a PDZ Europa ANCA-GSL elemental analyzer interfaced to a PDZ Europa 20-20 isotope ratio mass spectrometer (Sercon Ltd., Cheshire, UK).

cdm_data_type = Other
VARIABLES:
Reference (unitless)
Analysis (unitless)
Weight_ug (micrograms)
C_Amount_ug (micrograms)
d13C (D13 C, unitless)
N_Amount_ug (micrograms)
d15N (D15 N, unitless)


[Remineralization Experiments] - Experimental results: Remineralization experiments to assess the ability of natural assemblages of bacteria to utilize DOM produced under Si and N limitation (SBDOM project, SBC LTER project) (Mechanisms controlling the production and fate of DOM during diatom blooms)

Summary:
Culture studies of diatoms that dominate spring blooms in the Santa Barbara Channel were used to examine the effects of N and Si stress on the magnitude of production and the chemical composition of DOM (see the BIB Experiments dataset). The ability of natural assemblages of bacteria to utilize DOM produced under Si and N limitation was then assessed using remineralization experiments. Species examined in the remineralization experiments include: Skeletonema marinoi, Chaetoceros socialis, Thalassiosira weissflogii, and Odontella aurita.

cdm_data_type = Other
VARIABLES:
species (text)
treatment (text)
replicate (integer)
time_point (integer)
days_elapsed (number)
DOC (micromoles per Liter (umol/L))
DOC_sd (micromoles per Liter (umol/L))
TDN (micromoles per Liter (umol/L))
TDN_sd (micromoles per Liter (umol/L))
NO3_NO2 (micromoles per Liter (umol/L))
NH4 (micromoles per Liter (umol/L))
PO4 (Mass Concentration Of Phosphate In Sea Water, micromoles per Liter (umol/L))
dSi (D Si, micromoles per Liter (umol/L))
bact_abund_FCM (cells per Liter (cells/L))
bact_abund_DAPI (cells per Liter (cells/L))
bact_abund_DAPI_sd (cells per Liter (cells/L))
bact_prod (picomoles Leucine per Liter per hour (pmol Leu/L/hr))
bact_prod_sd (picomoles Leucine per Liter per hour (pmol Leu/L/hr))
specifc_growth_rate (per day)
bact_growth_eff (unitless)
DNA_sampled (yes or no)


[Respiration and Gross Photosynthesis Rates of Galápagos Macroalgae from 2022 to 2025] - Respiration and Gross Photosynthesis Rates of Galápagos Macroalgae from 2022 to 2025 (Temperature Regulation of Top-Down Control in a Pacific Upwelling System)

Summary:
We measured benthic algal dark respiration and gross photosynthesis rates in situ using a Community In Situ Metabolism instrument (CISME) system (a diver-portable respirometer) via SCUBA in Tijeretas, San Cristobal, Galapagos. We conducted field trials in June 2022, March 2024, October 2024, and January 2025. The samples were then transported to the Marine Ecology Laboratory at the Galapagos Science Center, where dried weight was determined.

cdm_data_type = Other
VARIABLES:
replicate (unitless)
step (unitless)
duration (Time, minutes)
o2_percent_sat (percent (%))
o2_umol_kg (µmol/kg)
dry_weight (grams (g))
year_month (unitless)
date (unitless)


[respiration-excretion rates - fish] - Mean respiration and excretion rates for fish from ARSV Laurence M. Gould and RVIB Nathaniel B. Palmer cruises LMG0104, LMG0203, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean)

Summary:
Mean respiration and excretion rates for fish from ARSV Laurence M. Gould and RVIB Nathaniel B. Palmer cruises LMG0104, LMG0203, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project)

cdm_data_type = Other
VARIABLES:
species (text)
season (text)
size_class (unitless)
number (integer)
WetMass (Wet Mass, mg)
WetMass_stdev (Wet Mass Stdev, mg)
H2O (H2 O, percent)
H2O_stdev (H2 O Stdev, percent)
Ash (percent)
Ash_stdev (percent)
O2_consumed (uL O2 per individual per hour)
O2_consumed_stdev (uL O2 per individual per hour)
VO2 (uL O2 per mg wet weight per hr)
VO2_stdev (uL O2 per mg wet weight per hr)
N_excrete (ug per individual per hour)
N_excrete_stdev (ug per individual per hour)
N_excrete_mass (ug N per mg wet mass per hour)
N_excrete_mass_stdev (ug N per mg wet mass per hour)
OtoN (Oto N, unitless)
OtoN_stdev (Oto N Stdev, unitless)


[respiration-excretion rates - micronekton] - Mean respiration and excretion rates for micronekton from ARSV Laurence M. Gould and RVIB Nathaniel B. Palmer cruises LMG0104, LMG0203, NBP0104, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean)

Summary:
Mean respiration and excretion rates for micronekton from ARSV Laurence M. Gould and RVIB Nathaniel B. Palmer cruises LMG0104, LMG0203, NBP0104, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project)

cdm_data_type = Other
VARIABLES:
species (text)
season (text)
number (integer)
size_class (unitless)
WetMass (Wet Mass, mg)
WetMass_stdev (Wet Mass Stdev, mg)
H2O (H2 O, percent)
H2O_stdev (H2 O Stdev, percent)
Ash (percent)
Ash_stdev (percent)
O2_consumed (uL O2 per individual per hour)
O2_consumed_stdev (uL O2 per individual per hour)
VO2 (uL O2 per mg wet weight per hr)
VO2_stdev (uL O2 per mg wet weight per hr)
N_excrete (ug per individual per hour)
N_excrete_stdev (ug per individual per hour)
N_excrete_mass (ug N per mg wet mass per hour)
N_excrete_mass_stdev (ug N per mg wet mass per hour)
OtoN (Oto N, unitless)
OtoN_stdev (Oto N Stdev, unitless)


[respiration-excretion rates - plankton] - Mean respiration and excretion rates for plankton from ARSV Laurence M. Gould and RVIB Nathaniel B. Palmer cruises LMG0104, LMG0203, NBP0104, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project) (U.S. GLOBEC Southern Ocean)

Summary:
Mean respiration and excretion rates for plankton from ARSV Laurence M. Gould and RVIB Nathaniel B. Palmer cruises LMG0104, LMG0203, NBP0104, and NBP0204 in the Southern Ocean from 2001-2002 (SOGLOBEC project)

cdm_data_type = Other
VARIABLES:
species (text)
season (text)
stage (unitless)
number (integer)
WetMass_mg (Wet Mass Mg, mg)
WetMass_stdev (Wet Mass Stdev, mg)
H2O (H2 O, percent)
H2O_stdev (H2 O Stdev, percent)
Ash (percent)
Ash_stdev (percent)
O2_consumed (uL O2 per individual per hour)
O2_consumed_stdev (uL O2 per individual per hour)
VO2 (uL O2 per mg wet weight per hr)
VO2_stdev (uL O2 per mg wet weight per hr)
N_excrete (ug per individual per hour)
N_excrete_stdev (ug per individual per hour)
N_excrete_mass (ug N per mg wet mass per hour)
N_excrete_mass_stdev (ug N per mg wet mass per hour)
OtoN (Oto N, unitless)
OtoN_stdev (Oto N Stdev, unitless)


[Results of meta-analysis on CovGE in phenotypic results] - Results from a meta-analysis investigating covariance between genetic and environmental (CovGE) effects in phenotypic results in published literature (RCN: Evolution in Changing Seas)

Summary:
Covariance can exist between the genetic and environmental influences on phenotype (CovGE)
and can have an important role in ecological and evolutionary processes in nature and population responses to environmental change. CovGE is commonly called countergradient variation (CnGV; negative CovGE)or cogradient variation (CoGV; positive CovGE)and has been recognized in classic studies that have established several long-standing hypotheses about CnGV and CoGV. For instance, it is hypothesized that CnGV is more prevalent in nature than CoGV, that CnGV is more prevalent in fish, amphibian, and invertebrate taxa, across latitudinal or altitudinal environmental gradients, and more frequently occurs in metabolic compensation traits, including development, growth, feeding, metabolism, and activity, while CoGV is more commonly observed in morphological traits. The recent development of a standardized method to measure CovGE allows for the first rigorous quantitative exploration of these hypotheses. We use meta-analysis and apply the novel quantitative method to test whether the above hypotheses are supported in the literature. We found no differences in frequency of CnGV and CoGV, and no systematic patterns relative to taxa, environmental gradient, or trait type. However, our analyses suggest that CovGE may be as common as gene by environment (GxE) interactions. Given that CovGE is likely to have a strong impact on future outcomes for organisms experiencing environmental change, that significant CovGE occurred frequently, and the lack of systematic patterns in the occurrence of CovGE, we encourage a more widespread application of measuring CovGE.

cdm_data_type = Other
VARIABLES:
Index1 (unitless)
Index (unitless)
no_bcodmo_term (Time, unitless)
Data_file_name (unitless)
First_Author (unitless)
Data_type (unitless)
Phylum (unitless)
Genus (unitless)
Species (unitless)
Order (unitless)
... (29 more variables)


[Retinal Response] - Retinal responses during exposure to decreasing oxygen partial pressure (pO2) (Vision-mediated influence of low oxygen on the physiology and ecology  of marine larvae)

Summary:
Retinal responses during exposure to decreasing oxygen partial pressure (pO2) in marine invertebrate larvae determined with electroretinograms.

cdm_data_type = Other
VARIABLES:
Species (unitless)
Experiment_Name (unitless)
Round (unitless)
O2_umol_l (micromole per liter (umol/L))
O2_ml_l (milliliter per liter (ml/l))
O2_umol_kg (micromole per kg (umol/kg))
O2_pO2 (O2 P O2, kiloPascal (kPa))
n_ctrl_area (unitless)
RunningAvg (Running Avg, unitless)
RunAvgLine (Run Avg Line, unitless)
Condition (unitless)


[REU-OTO] - Hydrographic, nutrient and oxygen data from CTD bottles during R/V Pelican cruises from 2016-06-29 to 2018-06-24 (REU Site: Ocean Observing for Emerging Ocean Scientists)

Summary:
Hydrographic, nutrient and oxygen data from CTD bottles during R/V Pelican cruises.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Station (unitless)
Month (unitless)
Day (unitless)
time2 (Time, unitless)
time (Date Time, seconds since 1970-01-01T00:00:00Z)
Water_Depth (meters)
latitude (degrees_north)
longitude (degrees_east)
Niskin_Bottle (unitless)
depth (Bottle Depth, m)
Sequence (unitless)
Nutrient_Bottle_no (unitless)
NO3_a (Mole Concentration Of Nitrate In Sea Water, umol/L)
NO3_b (Mole Concentration Of Nitrate In Sea Water, mg/L N)
HPO4_a (umol/L)
HPO4_b (mg/L P)
HSIO3_a (umol/L)
HSIO3_b (mg/L SiO3)
NH4_a (Mole Concentration Of Ammonium In Sea Water, umol/L)
NH4_b (Mole Concentration Of Ammonium In Sea Water, mg/L N)
NO2_a (Mole Concentration Of Nitrite In Sea Water, umol/L)
NO2_b (Mole Concentration Of Nitrite In Sea Water, mg/L N)
Urea_a (umol/L)
Urea_b (mg/L N)
NO3_NO2 (Mole Concentration Of Nitrate In Sea Water, uM)
Salinity_Bottle_no (unitless)
... (14 more variables)


[RI Community Data] - An archive of the fish and inveterate data from the Rhode Island Department of Environmental Management (RIDEM) juvenile fin-fish survey across 6 Rhode Island salt ponds from 2010-2015 (CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems)

Summary:
An archive of the fish and inveterate data from the Rhode Island Department of Environmental Management (RIDEM) juvenile fin-fish survey across 6 Rhode Island salt ponds from 2010-2015.

cdm_data_type = Other
VARIABLES:
Year (unitless)
Pond (unitless)
latitude (degrees_north)
longitude (degrees_east)
Common_Name (unitless)
Scientific_Name (unitless)
Frequency (individuals)


[RI Functional Trait Data] - The implications of functional trait variation from fish sampled in Rhode Island salt ponds from June to October 2018 (CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems)

Summary:
This dataset represents an archive of functional trait data from fish sampled in Rhode Island salt ponds from June to October 2018.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Pond (unitless)
latitude (degrees_north)
longitude (degrees_east)
Scientific_name (unitless)
Common_name (unitless)
Biomass (grams)
Standard_length (millimeters)
Fork_length (millimeters)
Oral_gape_surface (unitless)
Oral_gape_shape (unitless)
Oral_gape_position (unitless)
Protrusion (millimeters)
Eye_size (unitless)
Eye_Position (unitless)
Body_transversal_shape (unitless)
Body_transversal_surface (mm2 per gram)
Pectoral_in_position (unitless)
Caudal_peduncle_throttling (unitless)
Concentration_of_NH4 (Micromoles (uM))
Concentration_of_PO4 (Micromoles (uM))
N_P_ratio (unitless)


[RNA:DNA measurements - field data] - RNA:DNA measurements for field-collected animals from the Gulf of Mexico Estuary near Port Aransas and Mud Island, Texas from 2020 to 2021 (Counter-gradient Flow of Fatty Acids in Marine Food Webs Through Egg Boons)

Summary:
RNA:DNA measurements for field-collected animals from the Gulf of Mexico Estuary near Port Aransas and Mud Island, Texas from 2020 to 2021.

cdm_data_type = Other
VARIABLES:
Scientific_name (unitless)
Common_name (unitless)
Sample_ID (unitless)
Site (unitless)
lat (degrees_north)
longitude (degrees_east)
Date_collected (unitless)
Date_analyzed (unitless)
Tissue (unitless)
Primary_check (unitless)
RNA_DNA (unitless)


[RNA:DNA Ratios and Total lipids – experiment data] - RNA:DNA and total lipid measurements for laboratory-based experimental animals collected from the Gulf of Mexico Estuary near Port Aransas, Texas from 2020 to 2022 (Counter-gradient Flow of Fatty Acids in Marine Food Webs Through Egg Boons)

Summary:
RNA:DNA and total lipid measurements for laboratory-based experimental animals collected from the Gulf of Mexico Estuary near Port Aransas, Texas from 2020 to 2022. Laboratory experiments took place at the Fisheries and Mariculture Laboratory of the University of Texas Marine Science Institute from July 2021 to November 2022.

cdm_data_type = Other
VARIABLES:
Taxon (unitless)
Tissue_sampled (unitless)
Length (centimeters (cm))
Tank_number (unitless)
Acclimation_days (days)
Days_after_acclimation (days)
Treatment (unitless)
Diet_fed (unitless)
Notes (unitless)
Primary_check (unitless)
Total_lipids (milligrams per gram of dry weight (mg g-1 dw))
RNA_DNA (unitless)


[Rock macrofaunal community from Southern California seeps (July 2023)] - Rock macrofaunal community from samples collected at methane seeps off Southern California with the HOV Alvin from July 16-28, 2023 during R/V Atlantis cruise AT50-12 (Collaborative Research: Redefining the footprint of deep ocean methane seepage for benthic ecosystems)

Summary:
Rocks were collected at methane seeps off Southern California with the HOV Alvin from July 16-28, 2023 during R/V Atlantis cruise AT50-12 for macrofaunal analyses. This dataset contains major taxa counts for fauna identified as well as collection and sample metadata.

cdm_data_type = Other
VARIABLES:
Date (unitless)
Alvin_Dive (unitless)
Site (unitless)
latitude (degrees_north)
longitude (degrees_east)
depth (m)
Sample_number (unitless)
Habitat (unitless)
Sample_type (unitless)
Corrosion (unitless)
Surface_Area (cm2)
Annelida (per individual)
Arthropoda (per individual)
Mollusca (per individual)
Echinodermata (per individual)
Other (per individual)
Total_count (per individual)


[Rock Wall Experiment] - Rock wall manipulation experiment conducted in Bodega Bay, CA from 2010-2011 (Long-term and interactive effects of seaweed diversity and herbivory on intertidal community structure and functioning)

Summary:
These data summarize results from a field experiment testing effects of
gastropod grazer diversity and substrate heterogeneity generated by barnacles
on intertidal algal succession. The\u00a0manipulation experiment was conducted
in Bodega Bay, CA from 2010-2011.

cdm_data_type = Other
VARIABLES:
location (dimensionless)
latitude (degrees_north)
longitude (degrees_east)
survey (dimensionless)
date (unitless)
month (mm (01 to 12))
day (dd (01 to 31))
year (unitless)
plot (dimensionless)
block (dimensionless)
herb_trtmt (dimensionless)
barnacle_trtmt (dimensionless)
barn_trtmt (dimensionless)
area (square centimeters (cm^2))
taxon (dimensionless)
abundance (varies by taxon/group (see description))


[Rockfish hypoxia experiments] - Data from experiments testing the effects of hypoxia on behavior and physiology of two species of rockfish from from 2015-2016 (Collaborative Research: Ocean Acidification: RUI: Multiple Stressor Effects of Ocean Acidification and Hypoxia on Behavior, Physiology, and Gene Expression of Temperate Reef Fishes)

Summary:
This study investigated the effects of hypoxia on the behavior and physiology of juvenile rockfishes in a controlled laboratory setting to test how deoxygenation may impact early life stages of common temperate reef fishes. Juvenile rockfishes were collected from shallow rocky reef and kelp forest habitats at Stillwater Cove, central California (36\u02da 34' N, 121\u02da 56' W) during May-June of 2015. Newly settled copper (Sebastes caurinus) and blue (Sebastes mystinus) rockfish were reared in the laboratory under across a range of oxygen concentrations. Juvenile rockfishes were exposed to one of four dissolved oxygen treatment levels corresponding to conditions that currently occur or are predicted to occur in the future on the central California coast: 100% saturation (8.74 \u00b1 0.03 mg O2 L-1), 68% saturation (6.00 \u00b1 0.04 mg O2 L-1), 46% saturation (4.06 \u00b1 0.04 mg O2 L-1), or 26% saturation (2.25 \u00b1 0.05 mg O2 L-1), with two replicate tanks per treatment level. Behavior and physiological trials were conducted on each individual to test how each species responds to declining oxygen levels, including (1) escape response, (2) behavioral lateralization, (3) standard metabolic rate, (4) maximum metabolic rate, (5) aerobic scope, (6) pCrit (i.e., hypoxia tolerance test), and (7) ventilation rate. These data are published in Mattiasen et al. (2020).

cdm_data_type = Other
VARIABLES:
Fish_ID (unitless)
Species (unitless)
Oxygen_treatment_mg_per_L (milligrams O2 per liter (mg/L))
Tank_Replicate (unitless)
Initial_Standard_Length_mm (millimeters (mm))
Initial_Total_Length_mm (millimeters (mm))
Initial_Weight_g (grams (g))
Date_entered_into_experimental_treatments (unitless)
Date_at_end_of_experiment (unitless)
Final_Standard_Length_mm (millimeters (mm))
Final_Total_Length_mm (millimeters (mm))
Final_Weight_g (grams (g))
Escape_Time_seconds (seconds)
... (7 more variables)


[rocky intertidal biomimic] - Environmental data collected from biomimetic and other data loggers located in rocky intertidal zones of global oceans between July 1999 and October 2013 (Environmental signal analysis: Monitoring the impacts of climate change on rocky intertidal ecosystem across a cascade of scales)

Summary:
Environmental data (water temp, air temp, etc.) from biomimic devices and
other loggers located in the rocky intertidal zone.

cdm_data_type = Other
VARIABLES:
biomimic (text)
country (text)
state_province (text)
site_id (text)
site_name (text)
latitude (degrees_north)
longitude (degrees_east)
zone (text)
sub_zone (text)
wave_exp (text)
microsite_id (text)
organism (unitless)
filedate (unitless)
data_description (unitless)
date (unitless)
time2 (Time, unitless)
value (refer to data_description)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)


[Rosette Samples - HRS1415] - CTD data and analyses of bottles from CTD rosette samples collected on R/V Hugh R. Sharp cruise HRS1415 in August 2014 (The role of soluble Mn(III) in the biogeochemical coupling of the Mn, Fe and sulfur cycles)

Summary:
CTD data and analyses of bottles from CTD rosette samples collected on cruise HRS1415.

cdm_data_type = Other
VARIABLES:
Cast (unitless)
Station (unitless)
latitude (degrees_north)
longitude (degrees_east)
date (unitless)
time_local (unitless)
time_GMT (unitless)
time (ISO Date Time UTC, seconds since 1970-01-01T00:00:00Z)
Description (unitless)
Bottle_Num (unitless)
depth (m)
temp (Temperature, degrees Celsius)
sal (unitless)
CTD_O2 (micromolar (uM))
O2_sat_100pcnt (micromolar (uM))
O2_sat (unitless (percent))
fluor_chla (volts)
TA (microles per kilogram (uM/kg))
DIC (microles per kilogram (uM/kg))
pH (Sea Water Ph Reported On Total Scale, unitless (pH scale))
Particulate_MnOx (Particulate Mn Ox, micromolar (uM))
Particulate_MnOx_stdev (Particulate Mn Ox Stdev, micromolar (uM))
Dissolved_Mn2plus (micromolar (uM))
Dissolved_Mn2plus_stdev (micromolar (uM))
Dissolved_Mn3plus (micromolar (uM))
Dissolved_Mn3plus_stdev (micromolar (uM))
Dissolved_MnT (Dissolved Mn T, micromolar (uM))
... (12 more variables)


[Ross Sea metaproteome peptide spectral counts] - Ross Sea metaproteome peptide spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015 (Controls of Ross Sea Algal Community Structure)

Summary:
A net tow metaproteome of a Phaeocystis antarctica bloom in the Ross Sea, mapped here to Phaeocystis metatranscriptomes analyzed by 2D LCMS, in units of peptide spectral counts.

cdm_data_type = Other
VARIABLES:
sample_id (unitless)
cruise_id (unitless)
station_id (unitless)
latitude_dd (degrees_north)
longitude (Longitude_dd, degrees_east)
depth (Depth_m, m)
date_local (unitless)
time_local (unitless)
minimum_filter_size_microns (microns (um))
maximum_filter_size_microns (microns (um))
peptide_sequence (unitless)
peptide_start_index (unitless)
peptide_stop_index (unitless)
protein_molecular_weight_kDa (kilo-Daltons (kDa))
protein_id (unitless)
spectral_count_sum (unitless)
other_protein_ids (unitless)
best_protein_id_probability (unitless)
best_sequest_DCn_score (unitless)
best_sequest_Xcorr_score (unitless)
plus2H_spectra_count (unitless)
plus3H_spectra_count (unitless)
plus4H_spectra_count (unitless)
median_retention_time (unitless)
total_precursor_intensity (unitless)
TIC (unitless)
absolute_units_fmol_L (femtomoles per liter (fmol/L))
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)


[Ross Sea metaproteome protein spectral counts] - Ross Sea metaproteome protein spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015 (Controls of Ross Sea Algal Community Structure)

Summary:
A net tow metaproteome of a Phaeocystis antarctica bloom in the Ross Sea, mapped here to Phaeocystis metatranscriptomes analyzed by 2D LCMS, in units of protein spectral counts.

cdm_data_type = Other
VARIABLES:
sample_id (unitless)
cruise_id (unitless)
station_id (unitless)
latitude_dd (degrees_north)
longitude (Longitude_dd, degrees_east)
depth (Depth_m, m)
date_local (unitless)
time_local (unitless)
minimum_filter_size_microns (microns (um))
maximum_filter_size_microns (microns (um))
protein_id (unitless)
protein_name (unitless)
spectral_count (count)
molecular_weight_kDa (kilo-Daltons (kDa))
ncbi_id (unitless)
ncbi_name (unitless)
kegg_id (unitless)
kegg_description (unitless)
kegg_pathway (unitless)
pfams_id (unitless)
pfams_name (unitless)
uniprot_id (unitless)
enzyme_comm_id (unitless)
other_identified_proteins (unitless)
time (Iso_datetime_utc, seconds since 1970-01-01T00:00:00Z)


[ROV Dive Log (Wood Fall project)] - Log for dives by ROV Global Explorer (Wood Fall project) (The energetic assembly of biological communities: a test with deep-sea woodfalls)

Summary:
Log for dives by ROV Global Explorer (Wood Fall project)

cdm_data_type = Other
VARIABLES:
rov_dive (unitless)
date (unitless)
site (unitless)
cruise_dive_day (unitless)
latitude (degrees_north)
longitude (degrees_east)
start_depth (meters)
start_dive_time (hh:mm)
start_bottom_time (hh:mm)
end_latitude (Latitude, decimal degrees)
end_longitude (Longitude, decimal degrees)
end_depth (meters)
end_bottom_time (hh_mm)
cores (unitless)
core_no (unitless)
video_transects (unitless)
megafauna_collections (unitless)
elevator (yes/no)
notes (unitless)
transponder_deployed (yes/no)
transponder_latitude (Latitude, decimal degrees)
transponder_longitude (Longitude, decimal degrees)
transponder_address (unitless)