Project: Plankton Population Genetics Name: BCO-DMO Email: info@bco-dmo.org Institution: BCO-DMO InfoURL: https://www.bco-dmo.org/dataset/700279 Source URL: (local files) Unknown tabular digital data Woods Hole, MA, USA ERDDAP, version 2.22, at BCO-DMO https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.subset Plankton Population Genetics Metabarcoding data for the zooplankton community in the epipelagic, mesopelagic and upper bathypelagic zones (0-1500m) of the North Pacific Subtropical Gyre. The goal of this study was to assess the hidden diversity present in zooplankton assemblages in midwaters, and detect vertical gradients in species richness, depth distributions, and community composition of the full zooplankton assemblage. Samples were collected in June 2014 from Station ALOHA (22.75, -158) using a 1-meter square Multiple Opening and Closing Nets and Environmental Sampling System (MOCNESS, 200um mesh), on R/V Falkor cruise FK140613. Next generation sequence data (Illumina MiSeq, V3 chemistry, 300-bp paired-end) of the zooplankton assemblage derive from amplicons of the V1-V2 region of 18S rRNA (primers described in Fonseca et al. 2010). The data includes sequences and read count abundance information for molecular OTUs from both holoplanktonic and meroplanktonic taxa. All results derive from analyses in mothur v1.36.1 (Schloss et al. 2009, Kozich et al. 2013). Unknown https://www.bco-dmo.org/dataset/700279 Unknown Unknown ground condition Complete As needed -158.0 -158.0 22.75 22.75 Uncontrolled analysis analysis_description analysis_name assigned assigned_habitat bco bco-dmo biological bitscore chemical coverage data dataset description dmo erddap evalue fa3 FA3_N1_SF1 FA3_N1_SF2 FA3_N1_SF3 FA3_N2_SF1 FA3_N2_SF2 FA3_N2_SF3 FA3_N3_SF1 FA3_N3_SF2 FA3_N3_SF3 FA3_N4_SF1 FA3_N4_SF2 FA3_N4_SF3 FA3_N5_SF1 FA3_N5_SF2 FA3_N5_SF3 FA3_N6_SF1 FA3_N6_SF2 FA3_N6_SF3 FA3_N7_SF1 FA3_N7_SF2 FA3_N7_SF3 FA3_N8_SF1 FA3_N8_SF2 FA3_N8_SF3 FA3_N9_SF1 FA3_N9_SF2 FA3_N9_SF3 fa4 FA4_N1_SF1 FA4_N1_SF2 FA4_N1_SF3 FA4_N2_SF1 FA4_N2_SF2 FA4_N2_SF3 FA4_N3_SF1 FA4_N3_SF2 FA4_N3_SF3 FA4_N4_SF1 FA4_N4_SF2 FA4_N4_SF3 FA4_N5_SF1 FA4_N5_SF2 FA4_N5_SF3 FA4_N6_SF1 FA4_N6_SF2 FA4_N6_SF3 FA4_N7_SF1 FA4_N7_SF2 FA4_N7_SF3 FA4_N8_SF1 FA4_N8_SF2 FA4_N8_SF3 FA4_N9_SF1 FA4_N9_SF2 FA4_N9_SF3 habitat hit identity latitude length level1 level10 level11 level12 level13 level14 level2 level3 level4 level5 level6 level7 level8 level9 longitude management mismatch name ncbi NCBI_bitscore NCBI_evalue NCBI_mismatch NCBI_percent_coverage NCBI_percent_identity NCBI_percent_positive NCBI_query_sequence_id NCBI_sequence_length NCBI_top_hit NCBI_top_hit_taxID NCBI_top_hit_title oceanography office otu OTU_ID percent positive preliminary query sequence sf1 sf2 sf3 silva silva_tax_level1 silva_tax_level10 silva_tax_level11 silva_tax_level12 silva_tax_level13 silva_tax_level14 silva_tax_level2 silva_tax_level3 silva_tax_level4 silva_tax_level5 silva_tax_level6 silva_tax_level7 silva_tax_level8 silva_tax_level9 tax title top CF Standard Name Table v55 latitude longitude None. https://www.bco-dmo.org/dataset/700279/license BCO-DMO BCO-DMO Unknown Mailing and Physical Address

Unknown

Unknown Unknown Unknown Unknown Unknown info@bco-dmo.org https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph Web page to make a customized map or graph of the data HTML Unknown Unknown Unknown Unknown Unknown Unknown Point Point BCO-DMO Adam Shepherd Technical Director Mailing and Physical Address

266 Woods Hole Rd. MS#36

Woods Hole MA 02543 USA 508-289-2772 erddap@bco-dmo.org ERDDAP, version 2.22: get metadata; download data; make graphs and maps. https://www.bco-dmo.org/dataset/700279/license .asc 1 View OPeNDAP-style ISO-8859-1 comma-separated text. https://docs.opendap.org/index.php/UserGuideOPeNDAPMessages#ASCII_Service https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .csv 1 Download a ISO-8859-1 comma-separated text table (line 1: names; line 2: units; ISO 8601 times). https://en.wikipedia.org/wiki/Comma-separated_values https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .csvp 1 Download a ISO-8859-1 .csv file with line 1: name (units). Times are ISO 8601 strings. https://en.wikipedia.org/wiki/Comma-separated_values https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .csv0 1 Download a ISO-8859-1 .csv file without column names or units. Times are ISO 8601 strings. https://en.wikipedia.org/wiki/Comma-separated_values https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .dataTable 1 A JSON file formatted for use with the Google Visualization client library (Google Charts). https://developers.google.com/chart/interactive/docs/reference#dataparam https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .das 1 View the dataset's metadata via an ISO-8859-1 OPeNDAP Dataset Attribute Structure (DAS). https://docs.opendap.org/index.php/UserGuideOPeNDAPMessages#Dataset_Attribute_Structure https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .dds 1 View the dataset's structure via an ISO-8859-1 OPeNDAP Dataset Descriptor Structure (DDS). https://docs.opendap.org/index.php/UserGuideOPeNDAPMessages#Dataset_Descriptor_Structure https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .dods 1 OPeNDAP clients use this to download the data in the DODS binary format. https://docs.opendap.org/index.php/UserGuideOPeNDAPMessages#Data_Transmission https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .esriCsv 1 Download a ISO_8859_1 .csv file for ESRI's ArcGIS 9.x and below (separate date and time columns). https://support.esri.com/technical-article/000012745 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .fgdc 1 View the dataset's UTF-8 FGDC .xml metadata. https://www.fgdc.gov/standards/projects/FGDC-standards-projects/metadata/base-metadata/index_html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .geoJson 1 Download longitude,latitude,otherColumns data as a UTF-8 GeoJSON .json file. http://wiki.geojson.org/Main_Page https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .graph 1 View a Make A Graph web page. https://coastwatch.pfeg.noaa.gov/erddap/tabledap/documentation.html#GraphicsCommands https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .help 1 View a web page with a description of tabledap. https://www.opendap.org/pdf/ESE-RFC-004v1.2.pdf https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .html 1 View an OPeNDAP-style HTML Data Access Form. https://docs.opendap.org/index.php/UserGuideOPeNDAPMessages#WWW_Interface_Service https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .htmlTable 1 View a UTF-8 .html web page with the data in a table. Times are ISO 8601 strings. https://www.w3schools.com/html/html_tables.asp https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .iso19115 1 View the dataset's ISO 19115-2/19139 UTF-8 .xml metadata. https://en.wikipedia.org/wiki/Geospatial_metadata https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .itx 1 Download an ISO-8859-1 Igor Text File. Each response column becomes a wave. https://www.wavemetrics.net/doc/igorman/II-09%20Data%20Import%20Export.pdf https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .json 1 View a table-like UTF-8 JSON file (missing value = 'null'; times are ISO 8601 strings). https://www.json.org/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .jsonlCSV1 1 View a UTF-8 JSON Lines CSV file with column names on line 1 (mv = 'null'; times are ISO 8601 strings). https://jsonlines.org/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .jsonlCSV 1 View a UTF-8 JSON Lines CSV file without column names (mv = 'null'; times are ISO 8601 strings). https://jsonlines.org/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .jsonlKVP 1 View a UTF-8 JSON Lines file with Key:Value pairs (missing value = 'null'; times are ISO 8601 strings). https://jsonlines.org/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .mat 1 Download a MATLAB binary file. https://www.mathworks.com/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .nc 1 Download a flat, table-like, NetCDF-3 binary file with COARDS/CF/ACDD metadata. https://www.unidata.ucar.edu/software/netcdf/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .ncHeader 1 View the UTF-8 header (the metadata) for the NetCDF-3 .nc file. https://linux.die.net/man/1/ncdump https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .ncCF 1 Download a NetCDF-3 CF Discrete Sampling Geometries file (Contiguous Ragged Array). https://cfconventions.org/Data/cf-conventions/cf-conventions-1.8/cf-conventions.html#discrete-sampling-geometries https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .ncCFHeader 1 View the UTF-8 header (the metadata) for the .ncCF file. https://linux.die.net/man/1/ncdump https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .ncCFMA 1 Download a NetCDF-3 CF Discrete Sampling Geometries file (Multidimensional Array). https://www.ncei.noaa.gov/netcdf-templates https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .ncCFMAHeader 1 View the UTF-8 header (the metadata) for the .ncCFMA file. https://linux.die.net/man/1/ncdump https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .nccsv 1 Download a NetCDF-3-like 7-bit ASCII NCCSV .csv file with COARDS/CF/ACDD metadata. https://coastwatch.pfeg.noaa.gov/erddap/download/NCCSV.html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .nccsvMetadata 1 View the dataset's metadata as the top half of a 7-bit ASCII NCCSV .csv file. https://coastwatch.pfeg.noaa.gov/erddap/download/NCCSV.html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .ncoJson 1 Download a UTF-8 NCO lvl=2 JSON file with COARDS/CF/ACDD metadata. https://nco.sourceforge.net/nco.html#json https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .odvTxt 1 Download longitude,latitude,time,otherColumns as an ISO-8859-1 ODV Generic Spreadsheet File (.txt). https://odv.awi.de/en/documentation/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .subset 1 View an HTML form which uses faceted search to simplify picking subsets of the data. https://en.wikipedia.org/wiki/Faceted_search https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .tsv 1 Download a ISO-8859-1 tab-separated text table (line 1: names; line 2: units; ISO 8601 times). https://jkorpela.fi/TSV.html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .tsvp 1 Download a ISO-8859-1 .tsv file with line 1: name (units). Times are ISO 8601 strings. https://jkorpela.fi/TSV.html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .tsv0 1 Download a ISO-8859-1 .tsv file without column names or units. Times are ISO 8601 strings. https://jkorpela.fi/TSV.html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .wav 1 Download a .wav audio file. All columns must be numeric and of the same type. https://en.wikipedia.org/wiki/WAV https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .xhtml 1 View a UTF-8 XHTML (XML) file with the data in a table. Times are ISO 8601 strings. https://www.w3schools.com/html/html_tables.asp https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.html .kml 1 View a .kml file, suitable for Google Earth. https://developers.google.com/kml/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph .smallPdf 1 View a small .pdf image file with a graph or map. https://www.adobe.com/acrobat/about-adobe-pdf.html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph .pdf 1 View a standard, medium-sized .pdf image file with a graph or map. https://www.adobe.com/acrobat/about-adobe-pdf.html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph .largePdf 1 View a large .pdf image file with a graph or map. https://www.adobe.com/acrobat/about-adobe-pdf.html https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph .smallPng 1 View a small .png image file with a graph or map. http://www.libpng.org/pub/png/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph .png 1 View a standard, medium-sized .png image file with a graph or map. http://www.libpng.org/pub/png/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph .largePng 1 View a large .png image file with a graph or map. http://www.libpng.org/pub/png/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph .transparentPng 1 View a .png image file (just the data, without axes, landmask, or legend). http://www.libpng.org/pub/png/ https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_700279.graph None 20260904 BCO-DMO Adam Shepherd Technical Director Mailing and Physical Address

266 Woods Hole Rd. MS#36

Woods Hole MA 02543 USA 508-289-2772 erddap@bco-dmo.org Content Standard for Digital Geospatial Metadata FGDC-STD-012-2002 universal time None. https://www.bco-dmo.org/dataset/700279/license