bcodmo_dataset_1010240_v1 eng UTF8 dataset service Adam Shepherd BCO-DMO 508-289-2772 266 Woods Hole Rd. MS#36 Woods Hole MA 02543 USA erddap@bco-dmo.org pointOfContact 2026-10-30 ISO 19115-2 Geographic Information - Metadata Part 2 Extensions for Imagery and Gridded Data ISO 19115-2:2009(E) 2 column row [FGB22 PSTR Coral Disease Microscopy & Omics] - Light microscopy images, Symbiodiniaceae electron micrographs, and NCBI Sequence Read Archive (SRA) accession numbers associated with diseased and healthy Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Collaborative Research: RAPID: A multi-scale approach to predicting coral disease spread: leveraging an outbreak on coral-dense isolated reefs) 2026-10-30 creation erddap.bco-dmo.org bcodmo_dataset_1010240_v1 BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/1010240 information web browser Background Information Background information from the source information originator This dataset includes microscopy and omics data associated with 15 apparently healthy and diseased Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Northwest Gulf of Mexico) in September 2022, one month after a coral disease outbreak. Samples were collected from pairs of apparently healthy corals (HH tissue; n=5) and diseased corals (n=5). From diseased corals, two tissue samples were taken: apparently healthy tissue (HD) and disease-adjacent tissue (DD). Histopathology light microscopy images and electron micrographs of Symbiodiniaceae cells generated with transmission electron microscopy (TEM) are included as PDF files sorted by sample. These data also include NCBI Sequence Read Archive (SRA) accession numbers for raw fastq files of 16S rRNA gene sequencing, internal transcribed spacer-2 (ITS-2) sequencing, and RNA-Seq. This dataset supports an integrative approach for characterizing signatures of marine diseases at cellular, sub-cellular, and gene expression levels spanning multiple holobiont members: the coral host, Symbiodiniaceae microeukaryotes, bacteria/archaea communities, and viruses. BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/1010240 information web browser Background Information Background information from the source information pointOfContact earth science atmosphere ocean biosphere biology environment theme BCO-DMO project latitude longitude theme CF The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information. BCO-DMO largerWorkCitation project eng geoscientificInformation 1 -93.81482 -93.59718 27.87532 27.9086 [FGB22 PSTR Coral Disease Microscopy & Omics] - Light microscopy images, Symbiodiniaceae electron micrographs, and NCBI Sequence Read Archive (SRA) accession numbers associated with diseased and healthy Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Collaborative Research: RAPID: A multi-scale approach to predicting coral disease spread: leveraging an outbreak on coral-dense isolated reefs) 2026-10-30 creation BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/1010240 information web browser Background Information Background information from the source information originator This dataset includes microscopy and omics data associated with 15 apparently healthy and diseased Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Northwest Gulf of Mexico) in September 2022, one month after a coral disease outbreak. Samples were collected from pairs of apparently healthy corals (HH tissue; n=5) and diseased corals (n=5). From diseased corals, two tissue samples were taken: apparently healthy tissue (HD) and disease-adjacent tissue (DD). Histopathology light microscopy images and electron micrographs of Symbiodiniaceae cells generated with transmission electron microscopy (TEM) are included as PDF files sorted by sample. These data also include NCBI Sequence Read Archive (SRA) accession numbers for raw fastq files of 16S rRNA gene sequencing, internal transcribed spacer-2 (ITS-2) sequencing, and RNA-Seq. This dataset supports an integrative approach for characterizing signatures of marine diseases at cellular, sub-cellular, and gene expression levels spanning multiple holobiont members: the coral host, Symbiodiniaceae microeukaryotes, bacteria/archaea communities, and viruses. ERDDAP tabledap 1 -93.81482 -93.59718 27.87532 27.9086 tight ERDDAPtabledapDatasetQueryAndAccess https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_1010240_v1 ERDDAP:tabledap ERDDAP-tabledap ERDDAP's tabledap service (a flavor of OPeNDAP) for tabular (sequence) data. Add different extensions (e.g., .html, .graph, .das, .dds) to the base URL for different purposes. download [FGB22 PSTR Coral Disease Microscopy & Omics] - Light microscopy images, Symbiodiniaceae electron micrographs, and NCBI Sequence Read Archive (SRA) accession numbers associated with diseased and healthy Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Collaborative Research: RAPID: A multi-scale approach to predicting coral disease spread: leveraging an outbreak on coral-dense isolated reefs) 2026-10-30 creation BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/1010240 information web browser Background Information Background information from the source information originator This dataset includes microscopy and omics data associated with 15 apparently healthy and diseased Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Northwest Gulf of Mexico) in September 2022, one month after a coral disease outbreak. Samples were collected from pairs of apparently healthy corals (HH tissue; n=5) and diseased corals (n=5). From diseased corals, two tissue samples were taken: apparently healthy tissue (HD) and disease-adjacent tissue (DD). Histopathology light microscopy images and electron micrographs of Symbiodiniaceae cells generated with transmission electron microscopy (TEM) are included as PDF files sorted by sample. These data also include NCBI Sequence Read Archive (SRA) accession numbers for raw fastq files of 16S rRNA gene sequencing, internal transcribed spacer-2 (ITS-2) sequencing, and RNA-Seq. This dataset supports an integrative approach for characterizing signatures of marine diseases at cellular, sub-cellular, and gene expression levels spanning multiple holobiont members: the coral host, Symbiodiniaceae microeukaryotes, bacteria/archaea communities, and viruses. OPeNDAP 1 -93.81482 -93.59718 27.87532 27.9086 tight OPeNDAPDatasetQueryAndAccess https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_1010240_v1 OPeNDAP:OPeNDAP OPeNDAP An OPeNDAP service for tabular (sequence) data. Add different extensions (e.g., .html, .das, .dds) to the base URL for different purposes. download physicalMeasurement sample_id String Sample_id coral_id int Coral_id col_health String Col_health coral_species String Coral_species coral_aphiaID float Coral_aphiaid collection_date String Collection_date site String Site buoy float Buoy depth_f float Depth_ft ncbi_bioproject String Ncbi_bioproject ncbi_biosample String Ncbi_biosample ncbi_16S_sra String Ncbi_16s_sra ncbi_ITS2_sra String Ncbi_its2_sra ncbi_RNAseq_sra String Ncbi_rnaseq_sra TEM_file String Tem_file histo_file String Histo_file Adam Shepherd BCO-DMO 508-289-2772 266 Woods Hole Rd. MS#36 Woods Hole MA 02543 USA erddap@bco-dmo.org distributor OPeNDAP DAP/2.0 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_1010240_v1.html order Data Subset Form ERDDAP's version of the OPeNDAP .html web page for this dataset. Specify a subset of the dataset and download the data via OPeNDAP or in many different file types. download https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_1010240_v1.graph order Make-A-Graph Form ERDDAP's Make-A-Graph .html web page for this dataset. Create an image with a map or graph of a subset of the data. mapDigital This record was created from dataset metadata by ERDDAP Version 2.22