http://lod.bco-dmo.org/id/dataset/471922
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2013-11-21
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Time-at-temperature data (to generate histograms) from tagged jumbo squid from R/V R4107, R/V Pacific Storm, Chartered Vessels, R/V BIP XII cruises in the Monterey Bay vicinity and Gulf of California from 2004-2009
2013-11-21
publication
2013-11-21
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-11-14
publication
https://doi.org/10.1575/1912/bco-dmo.471922.1
William Gilly
Stanford University
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Gilly, W. (2013) Time-at-temperature data (to generate histograms) from tagged jumbo squid from R/V R4107, R/V Pacific Storm, Chartered Vessels, R/V BIP XII cruises in the Monterey Bay vicinity and Gulf of California from 2004-2009. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2013-11-21 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.471922.1 [access date]
Time-at-temperature data (to generate histograms) from tagged jumbo squid. Dataset Description: <p>Humboldt squid (<em>Dosidicus gigas</em>) were tagged from 2004-2009 in the California Current System (CCS) and Gulf of California (GOC). Data include the amount of time spent per temperautre bin from each tagged squid. Daily histograms can be produced by adding up the counts per day for each temperature bin. Each count in the count_night and count_day columns represents 75 seconds of time.</p> Methods and Sampling: <p>All data were collected with Mk10-PAT tags (Wildlife Computers, Redmond, WA) attached to living Humboldt squid (<em>Dosidicus gigas</em>) as described elsewhere (Gilly et al. 2006). Tags were programmed to sample at 0.5 Hz or 1 Hz. Tags deployed in Monterey Bay (CCS-1through CCS-6; deployed during OCE-0850839) were programmed to transmit time series data (75 s intervals = 0.01333 Hz) for depth, temperature and light to the Argos satellite system. Tags deployed in the Gulf of California (GOC-1 through GOC-6; deployed during OCE-0526640) were physically recovered, and the data were subsampled to match the 75 s interval of the CCS tags. This procedure was also carried out for tag CCS-6 that was recovered but never reported to Argos.</p>
<p>Mk10 PAT tags measure depth from 0 to 2000 m with a resolution of 0.5 m and temperature from 0 to +40 degrees C with a resolution of 0.05 degree C. The tags were used as supplied by the manufacturer without additional calibration.</p>
<p>References:<br />
Gilly, W.F., Zeidberg, L.D., Booth, J.A.T, Stewart, J.S., Marshall, G., Abernathy, K., and Bell, L.E. 2012. Locomotion and behavior of Humboldt squid, <em>Dosidicus gigas</em>, in relation to natural hypoxia in the Gulf of California, Mexico. The Journal of Experimental Biology, 215, 3175-3190. doi: <a href="http://dx.doi.org/10.1242/jeb.072538" target="_blank">10.1242/jeb.072538</a>.<br />
Gilly, W.F., Markaida, U., Baxter, C.H., Block, B.A., Boustany, A., Zeidberg, L., Reisenbichler, K., Robinson, B., Bazzino, G., and Salinas, C. 2006. Vertical and horizontal migrations by the jumbo squid <em>Dosidicus gigas</em> revealed by electronic tagging. Marine Ecology Press Series, 324, 1-17. doi: <a href="http://dx.doi.org/10.3354/meps324001" target="_blank">10.3354/meps324001</a>.<br />
Stewart, J.S., Field, J.C., Markaida, U., and Gilly, W.F. 2013. Behavioral ecology of jumbo squid (<em>Dosidicus gigas</em>) in relation to oxygen minimum zones. Deep Sea Research Part II: Topical Studies in Oceanography, 95, 197-208. doi:<a href="http://dx.doi.org/10.1016/j.dsr2.2012.06.005" target="_blank">10.1016/j.dsr2.2012.06.005</a>.</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0850839 Award URL: http://www.nsf.gov/awardsearch/showAward?AWD_ID=0850839
Funding provided by California Sea Grant (CASG) Award Number: R/OPCFISH-06
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-0526640 Award URL: http://www.nsf.gov/awardsearch/showAward?AWD_ID=0526640
completed
William Gilly
Stanford University
(831) 655-6219
Hopkins Marine Station of Stanford University 120 Oceanview Blvd.
Pacific Grove
CA
93950
United States
lignje@stanford.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
squid_id
tag_id
descrip
dorsal_mantle_len
date_start
lat_start
lon_start
date_end
lat_end
lon_end
sampling_time
max_depth
recovered
deploy_day
temp
count_night
count_day
MK10 PAT
theme
None, User defined
No BCO-DMO term
tagid
brief description
length
date begin
latitude at start time of measurement
longitude at start time of measurement
date end
latitude at end time of measurement
longitude at end time of measurement
time_elapsed
depth_max
water temperature
featureType
BCO-DMO Standard Parameters
Wildlife Computers Mk10 Pop-up Archival Tag (PAT)
instrument
BCO-DMO Standard Instruments
Gilly_Squid_CCS1
Gilly_Squid_GOC1
Gilly_Squid_GOC2
Gilly_Squid_GOC3
service
Deployment Activity
Monterey Bay vicinity
Gulf of California
California Current System and Gulf of California
place
Locations
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Hypoxia and the ecology, behavior and physiology of jumbo squid, Dosidicus gigas
https://www.bco-dmo.org/project/2279
Hypoxia and the ecology, behavior and physiology of jumbo squid, Dosidicus gigas
<p>This project concerns the ecological physiology of<em> Dosidicus gigas</em>, a large squid endemic to the eastern Pacific where it inhabits both open ocean and continental shelf environments. Questions to be addressed include:<br />
1) How does utilization of the OML by <em>D. gigas</em> vary on both a daily and seasonal basis, and how do the vertical distributions of the OML and its associated fauna vary?<br />
2) What behaviors of squid are impaired by conditions found in the OML, and how are impairments compensated to minimize costs of utilizing this environment? and<br />
3) What are the physiological and biochemical processes by which squid maintain swimming activity at such remarkable levels under low oxygen conditions?</p>
<p>The investigators will use an integrated approach involving oceanographic, acoustic, electronic tagging, physiological and biochemical methods. <em>D. gigas</em> provides a trophic connection between small, midwater organisms and top vertebrate predators, and daily vertical migrations between near-surface waters and a deep, low-oxygen environment (OML) characterize normal behavior of adult squid. Electronic tagging has shown that this squid can remain active for extended periods in the cold, hypoxic conditions of the upper OML. Laboratory studies have demonstrated suppression of aerobic metabolism during a cold, hypoxic challenge, but anaerobic metabolism does not appear to account for the level of activity maintained. Utilization of the OML in the wild may permit daytime foraging on midwater organisms. Foraging also occurs near the surface at night, and Dosidicus may thus be able to feed continuously. <em>D. gigas</em> is present in different regions of the Guaymas Basin on a predicable year-round basis, allowing changes in squid distribution to be related to changing oceanographic features on a variety time scales.</p>
<p>This research is of broad interest because <em>Dosidicus gigas</em> has substantially extended its range over the last decade, and foraging on commercially important finfish in invaded areas off California and Chile has been reported. In addition, the OML has expanded during the last several decades, mostly vertically by shoaling, including in the Gulf of Alaska, the Southern California Bight and several productive regions of tropical oceans, and a variety of ecological impacts will almost certainly accompany changes in the OML. Moreover,<em> D. gigas</em> currently supports the world's largest squid fishery, and this study will provide acoustic methods for reliable biomass estimates, with implications for fisheries management in Mexico and elsewhere.</p>
<p>This award is funded under the American Recovery and Reinvestment Act of 2009 (Public Law 111-5). This is a Collaborative Research project encompassing three NSF-OCE awards.</p>
<p><strong>Background Publications:</strong><br />
Stewart, J.S., Field, J.C., Markaida, U., and Gilly, W.F. 2013. Behavioral ecology of jumbo squid (<em>Dosidicus gigas</em>) in relation to oxygen minimum zones. Deep Sea Research Part II: Topical Studies in Oceanography, 95, 197-208. doi:<a href="https://dx.doi.org/10.1016/j.dsr2.2012.06.005" target="_blank">10.1016/j.dsr2.2012.06.005</a>.<br />
Gilly, W.F., Zeidberg, L.D., Booth, J.A.T, Stewart, J.S., Marshall, G., Abernathy, K., and Bell, L.E. 2012. Locomotion and behavior of Humboldt squid, <em>Dosidicus gigas</em>, in relation to natural hypoxia in the Gulf of California, Mexico. The Journal of Experimental Biology, 215, 3175-3190. doi: <a href="https://dx.doi.org/10.1242/jeb.072538" target="_blank">10.1242/jeb.072538</a>.</p>
<p>Related Project: <a href="http://www.bco-dmo.org/project/471887">Physiological limits to vertical migrations of the pelagic, jumbo squid, Dosidicus gigas in the Gulf of California</a></p>
Jumbo Squid Physiology
largerWorkCitation
project
Physiological limits to vertical migrations of the pelagic, jumbo squid, Dosidicus gigas in the Gulf of California
https://www.bco-dmo.org/project/471887
Physiological limits to vertical migrations of the pelagic, jumbo squid, Dosidicus gigas in the Gulf of California
<p><em>Description from NSF award abstract:</em><br />
Inshore and open-ocean (pelagic) squid are the most athletic of all invertebrates. They are highly active, jet-propelled swimmers, have high metabolic rates and grow at a prodigious rate throughout their short life spans of one to two years. Such squid are abundant in all the world's oceans where they play important ecological roles as major predators. Adult squid serve as essential prey for many top predators, including sharks, tuna, billfish and marine mammals. In addition, squid are becoming increasingly important in commercial fisheries worldwide as they replace slow-growing fish, particularly where these stocks are being depleted. <em>Dosidicus gigas</em>, also known as the jumbo or Humboldt squid, is a true giant, reaching 2-3 m in overall length and over 50 kg in mass. It is widely distributed over the eastern Pacific, ranging from Chile to Canada and nearly to Hawaii at the equator. It forms the basis of a major commercial fishery, presently the third largest in Mexico. Despite the ecological and economic importance of <em>D. gigas</em>, little is known about its life history, behavior or physiology. Its large size and open-ocean habitat complicate traditional field and laboratory studies. This project focuses on integrative field and laboratory studies of <em>D. gigas</em> in the Gulf of California using recently developed techniques that facilitate such studies. Pilot tagging studies have revealed that <em>D. gigas</em> spends the daytime in cold, deep, oxygen-depleted water (~10 deg C at 300 meters) and migrates at night to shallow, aerated surface waters that can reach 30 deg C. Frequent rapid dives at night to daytime depths cover several hundred meters in minutes. It is a mystery how these large, metabolically active squid can tolerate the stress of chronic daytime hypoxia at depth. Conversely, warm surface waters also may present a stress that limits the time squid can spend in this zone. This proposal will employ electronic tagging to track vertical migrations of this pelagic predator and to monitor natural jetting and respiration at different depths. Oxygen consumption determined from these data, with calibrations provided by laboratory swim-tunnel experiments and biochemical indices of anaerobic metabolism, will provide a measure of the true energetic costs to the squid itself. Extreme low-light video methods will reveal natural behaviors over the range of a typical vertical migration, both day and night. Thus, this project will reveal what this remarkable squid is doing in its oceanic habitat, why it is doing it, and what physiological and biochemical adaptations permit these behaviors at some depths and preclude them at others.</p>
<p>This study will greatly advance our understanding of the biology of <em>D. gigas</em> and provide a model for an integrated approach to studying the ecological physiology of other pelagic predators. It will also establish a life-history framework that will ultimately be necessary to manage this fishery at the ecosystem level in Mexico and elsewhere.</p>
<p>Related Project: <a href="http://www.bco-dmo.org/project/2279">Hypoxia and the ecology, behavior and physiology of jumbo squid, <em>Dosidicus gigas</em></a></p>
Jumbo Squid Vertical Migration
largerWorkCitation
project
eng; USA
oceans
Monterey Bay vicinity; Gulf of California; California Current System and Gulf of California
-123.48
-111.22
27.34
37.91
2008-10-12
2008-11-28
From projects that focused on the following 2 locations: 1. Guaymas Basin, Gulf of California, Mexico (27 N 112 W) and Monterey Bay, CA (36 N 123 W) 2. Gulf of California
0
BCO-DMO catalogue of parameters from Time-at-temperature data (to generate histograms) from tagged jumbo squid from R/V R4107, R/V Pacific Storm, Chartered Vessels, R/V BIP XII cruises in the Monterey Bay vicinity and Gulf of California from 2004-2009
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/471934.rdf
Name: squid_id
Units: dimensionless
Description: Unique squid identifier.
http://lod.bco-dmo.org/id/dataset-parameter/471935.rdf
Name: tag_id
Units: dimensionless
Description: Unique tag identifier.
http://lod.bco-dmo.org/id/dataset-parameter/471936.rdf
Name: descrip
Units: dimensionless
Description: Description of sampling location and time of year. CCS = California Current System; GOC = Gulf of California.
http://lod.bco-dmo.org/id/dataset-parameter/471937.rdf
Name: dorsal_mantle_len
Units: centimeters (cm)
Description: Dorsal mantle length (DML).
http://lod.bco-dmo.org/id/dataset-parameter/471938.rdf
Name: date_start
Units: unitless
Description: Year, month, and day when the tag was deployed on the squid in YYYYmmdd format.
http://lod.bco-dmo.org/id/dataset-parameter/471939.rdf
Name: lat_start
Units: decimal degrees
Description: Latitude at the time of deployment. Positive values = North.
http://lod.bco-dmo.org/id/dataset-parameter/471940.rdf
Name: lon_start
Units: decimal degrees
Description: Longitude at the time of deployment. Negative values = West.
http://lod.bco-dmo.org/id/dataset-parameter/471941.rdf
Name: date_end
Units: unitless
Description: Year, month, and day when the tag detached from the squid in YYYYmmdd format.
http://lod.bco-dmo.org/id/dataset-parameter/471942.rdf
Name: lat_end
Units: decimal degrees
Description: Latitude at the time the tag detached. Positive values = North.
http://lod.bco-dmo.org/id/dataset-parameter/471943.rdf
Name: lon_end
Units: decimal degrees
Description: Longitude at the time the tag detached. Negative values = West.
http://lod.bco-dmo.org/id/dataset-parameter/471944.rdf
Name: sampling_time
Units: number of days
Description: Total number of sampling days.
http://lod.bco-dmo.org/id/dataset-parameter/471945.rdf
Name: max_depth
Units: meters (m)
Description: Maximum depth achieved by squid.
http://lod.bco-dmo.org/id/dataset-parameter/471946.rdf
Name: recovered
Units: yes/no
Description: Indicates if the tag was physically recovered.
http://lod.bco-dmo.org/id/dataset-parameter/471947.rdf
Name: deploy_day
Units: dimensionless
Description: Day of total tag deployment starting on Day 1.
http://lod.bco-dmo.org/id/dataset-parameter/471948.rdf
Name: temp
Units: degrees Celsius
Description: Water temperature.
http://lod.bco-dmo.org/id/dataset-parameter/471949.rdf
Name: count_night
Units: Number of counts (1 count = 75 seconds)
Description: Number of counts spent in given temperature bin during nighttime (sunset to sunrise). Each count represents 75 seconds.
http://lod.bco-dmo.org/id/dataset-parameter/471950.rdf
Name: count_day
Units: Number of counts (1 count = 75 seconds)
Description: Number of counts spent in given temperature bin during daytime (sunrise to sunset). Each count represents 75 seconds.
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
328825
https://darchive.mblwhoilibrary.org/bitstream/1912/24843/1/dataset-471922_jumbo-squid-time-temperature__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.471922.1
download
onLine
dataset
<p>All data were collected with Mk10-PAT tags (Wildlife Computers, Redmond, WA) attached to living Humboldt squid (<em>Dosidicus gigas</em>) as described elsewhere (Gilly et al. 2006). Tags were programmed to sample at 0.5 Hz or 1 Hz. Tags deployed in Monterey Bay (CCS-1through CCS-6; deployed during OCE-0850839) were programmed to transmit time series data (75 s intervals = 0.01333 Hz) for depth, temperature and light to the Argos satellite system. Tags deployed in the Gulf of California (GOC-1 through GOC-6; deployed during OCE-0526640) were physically recovered, and the data were subsampled to match the 75 s interval of the CCS tags. This procedure was also carried out for tag CCS-6 that was recovered but never reported to Argos.</p>
<p>Mk10 PAT tags measure depth from 0 to 2000 m with a resolution of 0.5 m and temperature from 0 to +40 degrees C with a resolution of 0.05 degree C. The tags were used as supplied by the manufacturer without additional calibration.</p>
<p>References:<br />
Gilly, W.F., Zeidberg, L.D., Booth, J.A.T, Stewart, J.S., Marshall, G., Abernathy, K., and Bell, L.E. 2012. Locomotion and behavior of Humboldt squid, <em>Dosidicus gigas</em>, in relation to natural hypoxia in the Gulf of California, Mexico. The Journal of Experimental Biology, 215, 3175-3190. doi: <a href="http://dx.doi.org/10.1242/jeb.072538" target="_blank">10.1242/jeb.072538</a>.<br />
Gilly, W.F., Markaida, U., Baxter, C.H., Block, B.A., Boustany, A., Zeidberg, L., Reisenbichler, K., Robinson, B., Bazzino, G., and Salinas, C. 2006. Vertical and horizontal migrations by the jumbo squid <em>Dosidicus gigas</em> revealed by electronic tagging. Marine Ecology Press Series, 324, 1-17. doi: <a href="http://dx.doi.org/10.3354/meps324001" target="_blank">10.3354/meps324001</a>.<br />
Stewart, J.S., Field, J.C., Markaida, U., and Gilly, W.F. 2013. Behavioral ecology of jumbo squid (<em>Dosidicus gigas</em>) in relation to oxygen minimum zones. Deep Sea Research Part II: Topical Studies in Oceanography, 95, 197-208. doi:<a href="http://dx.doi.org/10.1016/j.dsr2.2012.06.005" target="_blank">10.1016/j.dsr2.2012.06.005</a>.</p>
Specified by the Principal Investigator(s)
<p>Counts of presence in each 0.5 degree C temperature bin were made from the 75 s time-series data using Matlab scripts. Each count represents a 75 s interval. Daytime and nighttime were defined by times of local sunrise and sunset (<a href="http://aa.usno.navy.mil/data/docs/RS_OneYear.php" target="_blank">http://aa.usno.navy.mil/data/docs/RS_OneYear.php</a>). Time-at-temperature histograms were computed from these data and reported as counts (75 s intervals) in 0.5 degree C bins for individual day and night periods. Note: Day 1 of deployment and the final day are not 24 hour days, because tag activation and pop-off occurred at arbitrary times.</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
MK10 PAT
MK10 PAT
PI Supplied Instrument Name: MK10 PAT PI Supplied Instrument Description:Mk10-PAT tags (Wildlife Computers, Redmond, WA) were programmed to sample at 0.5 Hz or 1 Hz. Tags deployed in Monterey Bay (CCS-1through CCS-6) were programmed to transmit time series data (75 s intervals = 0.01333 Hz) to the Argos satellite system. Tags deployed in the Gulf of California (GOC-1 through GOC-6) were physically recovered. Mk10 PAT tags measure depth from 0 to 2000 m with a resolution of 0.5 m and temperature from 0 to +40 degrees C with a resolution of 0.05 degree C. The tags were used as supplied by the manufacturer without additional calibration. Instrument Name: Wildlife Computers Mk10 Pop-up Archival Tag (PAT) Instrument Short Name:MK10 PAT Instrument Description: The Pop-up Archival Transmitting (Mk10-PAT) tag, manufactured by Wildlife Computers, is a combination of archival and Argos satellite technology. It is designed to track the large-scale movements and behavior of fish and other animals which do not spend enough time at the surface to allow the use of real-time Argos satellite tags. The PAT can be configured to transmit time-at-depth and time-at-temperature histograms, depth-temperature profiles, and/or light-level curves. The histogram duration (1 to 24 hours) and bin ranges can also be configured. PAT archives depth, temperature, and light-level data while being towed by the animal. At a user-specified date and time, the PAT actively corrodes the pin to which the tether is attached, thus releasing the PAT from the animal. The PAT then floats to the surface and transmits summarized information via the Argos system. Argos also uses the transmitted messages to provide the position of the tag at the time of release.
Cruise: Gilly_Squid_CCS1
Gilly_Squid_CCS1
R/V R4107
R/V R4107
vessel
Gilly_Squid_CCS1
William Gilly
Stanford University
Cruise: Gilly_Squid_GOC1
Gilly_Squid_GOC1
R/V Pacific Storm
R/V Pacific Storm
vessel
Gilly_Squid_GOC1
William Gilly
Stanford University
Cruise: Gilly_Squid_GOC2
Gilly_Squid_GOC2
Chartered Vessel
vessel
Gilly_Squid_GOC2
William Gilly
Stanford University
Cruise: Gilly_Squid_GOC3
Gilly_Squid_GOC3
R/V BIP XII
R/V BIP XII
vessel
Gilly_Squid_GOC3
William Gilly
Stanford University
R/V R4107
R/V R4107
vessel
R/V Pacific Storm
R/V Pacific Storm
vessel
Chartered Vessel
vessel
R/V BIP XII
R/V BIP XII
vessel