http://lod.bco-dmo.org/id/dataset/748140
eng; USA
utf8
dataset
Highest level of data collection, from a common set of sensors or instrumentation, usually within the same research project
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
2018-10-16
ISO 19115-2 Geographic Information - Metadata - Part 2: Extensions for Imagery and Gridded Data
ISO 19115-2:2009(E)
Seawater chemistry treatment conditions
2018-10-16
publication
2018-10-16
revision
Marine Biological Laboratory/Woods Hole Oceanographic Institution Library (MBLWHOI DLA)
2019-11-15
publication
https://doi.org/10.1575/1912/bco-dmo.748140.1
Robert Carpenter
California State University Northridge
principalInvestigator
Peter J. Edmunds
California State University Northridge
principalInvestigator
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
publisher
Cite this dataset as: Carpenter, R., Edmunds, P. (2018) Seawater chemistry treatment conditions. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2018-10-16 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.748140.1 [access date]
Seawater chemistry treatment conditions Dataset Description: <p>See Doo et al. (2018)&nbsp;for a detailed overview of the methodology.</p> Methods and Sampling: <p><strong>Collection and experimental setup methods extracted from Doo et al. (2018):</strong><br />
Colony collection: In January 2017, 48 colonies of Pocillopora verrucosa (Ellis and Solander 1786) were collected randomly on scuba from 5 m depth on the north shore of Mo’orea, French Polynesia (17° 28'&nbsp;33"S, 149° 49' 20"W).&nbsp;Following 5 d of acclimation, 24 of the corals were selected randomly for removal of all trapeziid crabs and alpheid shrimps&nbsp;("minus-ectosymbiont") by probing with a wooden stick (3 mm diameter). Crabs and shrimp were left in the other 24 corals ("plus-ectosymbiont"), which were subjected to a procedural control in which they were probed with a wooden stick.</p>
<p>Incubation setup:&nbsp;Twelve mesocosm tanks (150 L volume with sand-filtered seawater pumped from 14 m depth in Cooks’ Bay and supplied to the tanks at ~200 mL min−1) were used in this experiment, with four colonies per tank in a split-plot design contrasting plus-ectosymbiont (n = 2 colonies/tank) and minus-ectosymbiont (n = 2 colonies/tank) corals.</p>
<p><strong>Daily measures of salinity, pH, and total alkalinity (TA): </strong><br />
Temperature was recorded with a thermometer (± 0.05 degrees C; ThermoFisher Traceable) and salinity was measured with a bench-top conductivity meter (± 0.1 psu, YSI 3100). TA and pH were measured within one hour of sample collection. Seawater collected for TA was filtered (0.45 um; Chanson and Millero, 2007) and analyzed using potentiometric titrations with 0.1-N HCl using an automatic titrator (Mettler Toledo T50) (Dickson et al., 2007). Seawater pH was measured with spectrophotometric methods (Nemzer and Dickson, 2005).</p>
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1026851 Award URL: http://www.nsf.gov/awardsearch/showAward?AWD_ID=1026851
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1236905 Award URL: http://www.nsf.gov/awardsearch/showAward?AWD_ID=1236905
Funding provided by NSF Division of Ocean Sciences (NSF OCE) Award Number: OCE-1415268 Award URL: http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1415268
completed
Robert Carpenter
California State University Northridge
818-677-3256
Department of Biology 18111 Nordhoff Street
Northridge
CA
91330-8303
USA
robert.carpenter@csun.edu
pointOfContact
Peter J. Edmunds
California State University Northridge
818-677-2502
Department of Biology 18111 Nordhoff Street
Northridge
CA
91330-8303
USA
peter.edmunds@csun.edu
pointOfContact
asNeeded
Dataset Version: 1
Unknown
Date
Tank_no
TA
pH
Salinity
Temperature
Light
Mettler Toledo T50
Li-Cor LI-1400 m and 4p LI-193 sensors
YSI 3100
ThermoFisher Traceable
theme
None, User defined
date
tank
total alkalinity (TA)
pH
salinity
water temperature
irradiance
featureType
BCO-DMO Standard Parameters
Automatic titrator
Light Meter
Spectrophotometer
Conductivity Meter
digital thermometer
instrument
BCO-DMO Standard Instruments
otherRestrictions
otherRestrictions
Access Constraints: none. Use Constraints: Please follow guidelines at: http://www.bco-dmo.org/terms-use Distribution liability: Under no circumstances shall BCO-DMO be liable for any direct, incidental, special, consequential, indirect, or punitive damages that result from the use of, or the inability to use, the materials in this data submission. If you are dissatisfied with any materials in this data submission your sole and exclusive remedy is to discontinue use.
Long Term Ecological Research network
http://www.lternet.edu/
Long Term Ecological Research network
adapted from http://www.lternet.edu/
The National Science Foundation established the LTER program in 1980 to support research on long-term ecological phenomena in the United States. The Long Term Ecological Research (LTER) Network is a collaborative effort involving more than 1800 scientists and students investigating ecological processes over long temporal and broad spatial scales. The LTER Network promotes synthesis and comparative research across sites and ecosystems and among other related national and international research programs. The LTER research sites represent diverse ecosystems with emphasis on different research themes, and cross-site communication, network publications, and research-planning activities are coordinated through the LTER Network Office.
2017 LTER research site map obtained from https://lternet.edu/site/lter-network/
LTER
largerWorkCitation
program
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=503477
Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES): Ocean Acidification (formerly CRI-OA)
NSF Climate Research Investment (CRI) activities that were initiated in 2010 are now included under Science, Engineering and Education for Sustainability NSF-Wide Investment (SEES). SEES is a portfolio of activities that highlights NSF's unique role in helping society address the challenge(s) of achieving sustainability. Detailed information about the SEES program is available from NSF (https://www.nsf.gov/funding/pgm_summ.jsp?pims_id=504707).
In recognition of the need for basic research concerning the nature, extent and impact of ocean acidification on oceanic environments in the past, present and future, the goal of the SEES: OA program is to understand (a) the chemistry and physical chemistry of ocean acidification; (b) how ocean acidification interacts with processes at the organismal level; and (c) how the earth system history informs our understanding of the effects of ocean acidification on the present day and future ocean.
Solicitations issued under this program:NSF 10-530, FY 2010-FY2011NSF 12-500, FY 2012NSF 12-600, FY 2013NSF 13-586, FY 2014
NSF 13-586 was the final solicitation that will be released for this program.
PI Meetings:1st U.S. Ocean Acidification PI Meeting(March 22-24, 2011, Woods Hole, MA)2nd U.S. Ocean Acidification PI Meeting(Sept. 18-20, 2013, Washington, DC)
3rd U.S. Ocean Acidification PI Meeting (June 9-11, 2015, Woods Hole, MA – Tentative)
NSF media releases for the Ocean Acidification Program:
Press Release 10-186 NSF Awards Grants to Study Effects of Ocean Acidification
Discovery Blue Mussels "Hang On" Along Rocky Shores: For How Long?
Discovery nsf.gov - National Science Foundation (NSF) Discoveries - Trouble in Paradise: Ocean Acidification This Way Comes - US National Science Foundation (NSF)
Press Release 12-179 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: Finding New Answers Through National Science Foundation Research Grants - US National Science Foundation (NSF)
Press Release 13-102 World Oceans Month Brings Mixed News for Oysters
Press Release 13-108 nsf.gov - National Science Foundation (NSF) News - Natural Underwater Springs Show How Coral Reefs Respond to Ocean Acidification - US National Science Foundation (NSF)
Press Release 13-148 Ocean acidification: Making new discoveries through National Science Foundation research grants
Press Release 13-148 - Video nsf.gov - News - Video - NSF Ocean Sciences Division Director David Conover answers questions about ocean acidification. - US National Science Foundation (NSF)
Press Release 14-010 nsf.gov - National Science Foundation (NSF) News - Palau's coral reefs surprisingly resistant to ocean acidification - US National Science Foundation (NSF)
Press Release 14-116 nsf.gov - National Science Foundation (NSF) News - Ocean Acidification: NSF awards $11.4 million in new grants to study effects on marine ecosystems - US National Science Foundation (NSF)
SEES-OA
largerWorkCitation
program
Moorea Coral Reef Long-Term Ecological Research site
http://mcr.lternet.edu/
Moorea Coral Reef Long-Term Ecological Research site
<p><strong>From <a href="http://www.lternet.edu/sites/mcr/">http://www.lternet.edu/sites/mcr/</a> and <a href="http://mcr.lternet.edu/">http://mcr.lternet.edu/</a></strong>:<br />
The Moorea Coral Reef LTER site encompasses the coral reef complex that surrounds the island of Moorea, French Polynesia (17°30'S, 149°50'W). Moorea is a small, triangular volcanic island 20 km west of Tahiti in the Society Islands of French Polynesia. An offshore barrier reef forms a system of shallow (mean depth ~ 5-7 m), narrow (~0.8-1.5 km wide) lagoons around the 60 km perimeter of Moorea. All major coral reef types (e.g., fringing reef, lagoon patch reefs, back reef, barrier reef and fore reef) are present and accessible by small boat.</p>
<p>The MCR LTER was established in 2004 by the US National Science Foundation (NSF) and is a partnership between the University of California Santa Barbara and California State University, Northridge. MCR researchers include marine scientists from the UC Santa Barbara, CSU Northridge, UC Davis, UC Santa Cruz, UC San Diego, CSU San Marcos, Duke University and the University of Hawaii. Field operations are conducted from the UC Berkeley Richard B. Gump South Pacific Research Station on the island of Moorea, French Polynesia.</p>
<p><strong>MCR LTER Data:</strong> The Moorea Coral Reef (MCR) LTER data are managed by and available directly from the MCR project data site URL shown above. The datasets listed below were collected at or near the MCR LTER sampling locations, and funded by NSF OCE as ancillary projects related to the MCR LTER core research themes.</p>
<p><strong>This project is supported by continuing grants with slight name variations:</strong><br />
LTER: Long-Term Dynamics of a Coral Reef Ecosystem<br />
LTER: MCR II - Long-Term Dynamics of a Coral Reef Ecosystem<br />
LTER: MCR IIB: Long-Term Dynamics of a Coral Reef Ecosystem<br />
LTER: MCR III: Long-Term Dynamics of a Coral Reef Ecosystem<br />
LTER: MCR IV: Long-Term Dynamics of a Coral Reef Ecosystem</p>
MCR LTER
largerWorkCitation
project
Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity
http://mcr.lternet.edu
Collaborative Research: Ocean Acidification and Coral Reefs: Scale Dependence and Adaptive Capacity
<p><em>Extracted from the NSF award abstract:</em></p>
<p>This project focuses on the most serious threat to marine ecosystems, Ocean Acidification (OA), and addresses the problem in the most diverse and beautiful ecosystem on the planet, coral reefs. The research utilizes Moorea, French Polynesia as a model system, and builds from the NSF investment in the Moorea Coral Reef Long Term Ecological Research Site (LTER) to exploit physical and biological monitoring of coral reefs as a context for a program of studies focused on the ways in which OA will affect corals, calcified algae, and coral reef ecosystems. The project builds on a four-year NSF award with research in five new directions: (1) experiments of year-long duration, (2) studies of coral reefs to 20-m depth, (3) experiments in which carbon dioxide will be administered to plots of coral reef underwater, (4) measurements of the capacity of coral reef organisms to change through evolutionary and induced responses to improve their resistance to OA, and (5) application of emerging theories to couple studies of individual organisms to studies of whole coral reefs. Broader impacts will accrue through a better understanding of the ways in which OA will affect coral reefs that are the poster child for demonstrating climate change effects in the marine environment, and which provide income, food, and coastal protection to millions of people living in coastal areas, including in the United States. </p>
<p>This project focuses on the effects of Ocean Acidification on tropical coral reefs and builds on a program of research results from an existing 4-year award, and closely interfaces with the technical, hardware, and information infrastructure provided through the Moorea Coral Reef (MCR) LTER. The MCR-LTER, provides an unparalleled opportunity to partner with a study of OA effects on a coral reef with a location that arguably is better instrumented and studied in more ecological detail than any other coral reef in the world. Therefore, the results can be both contextualized by a high degree of ecological and physical relevance, and readily integrated into emerging theory seeking to predict the structure and function of coral reefs in warmer and more acidic future oceans. The existing award has involved a program of study in Moorea that has focused mostly on short-term organismic and ecological responses of corals and calcified algae, experiments conducted in mesocosms and flumes, and measurements of reef-scale calcification. This new award involves three new technical advances: for the first time, experiments will be conducted of year-long duration in replicate outdoor flumes; CO2 treatments will be administered to fully intact reef ecosystems in situ using replicated underwater flumes; and replicated common garden cultivation techniques will be used to explore within-species genetic variation in the response to OA conditions. Together, these tools will be used to support research on corals and calcified algae in three thematic areas: (1) tests for long-term (1 year) effects of OA on growth, performance, and fitness, (2) tests for depth-dependent effects of OA on reef communities at 20-m depth where light regimes are attenuated compared to shallow water, and (3) tests for beneficial responses to OA through intrinsic, within-species genetic variability and phenotypic plasticity. Some of the key experiments in these thematic areas will be designed to exploit integral projection models (IPMs) to couple organism with community responses, and to support the use of the metabolic theory of ecology (MTE) to address scale-dependence of OA effects on coral reef organisms and the function of the communities they build.</p>
<p><strong>The following publications and data resulted from this project:</strong></p>
<p>Comeau S, Carpenter RC, Lantz CA, Edmunds PJ. (2016) Parameterization of the response of calcification to temperature and pCO2 in the coral Acropora pulchra and the alga Lithophyllum kotschyanum. Coral Reefs 2016. DOI <a href="http://doi.org/10.1007/s00338-016-1425-0" target="_blank">10.1007/s00338-016-1425-0</a>.<br /><a href="https://www.bco-dmo.org/dataset/683723" target="_blank">calcification rates</a> (2014)<br /><a href="https://www.bco-dmo.org/dataset/648442" target="_blank">calcification rates </a>(2010)</p>
<p>Comeau, S., Carpenter, R.C., Edmunds, P.J. (2016) Effects of pCO2 on photosynthesis and respiration of tropical scleractinian corals and calcified algae. ICES Journal of Marine Science doi:<a href="http://doi.org/10.1093/icesjms/fsv267" target="_blank">10.1093/icesjms/fsv267</a>.<br /><a href="http://www.bco-dmo.org/dataset/645277">respiration and photosynthesis I</a><br /><a href="http://www.bco-dmo.org/dataset/648416">respiration and photosynthesis II</a></p>
<p>Evensen, N.R. & Edmunds P. J. (2016) Interactive effects of ocean acidification and neighboring corals on the growth of Pocillopora verrucosa. Marine Biology, 163:148. doi: <a href="http://doi.org/10.1007/s00227-016-2921-z" target="_blank">10.1007/s00227-016-2921-z</a><br /><a href="https://www.bco-dmo.org/dataset/683932" target="_blank">coral growth</a><br /><a href="https://www.bco-dmo.org/dataset/684541" target="_blank">seawater chemistry</a><br /><a href="https://www.bco-dmo.org/dataset/684528">coral colony interactions</a></p>
OA coral adaptation
largerWorkCitation
project
eng; USA
biota
oceans
-149.8222
-149.8222
-17.5592
-17.5592
2017-01-21
2017-02-06
From projects that focused on the following 2 locations: 1. Island of Moorea, French Polynesia 2. Moorea, French Polynesia
0
BCO-DMO catalogue of parameters from Seawater chemistry treatment conditions
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
http://lod.bco-dmo.org/id/dataset-parameter/748181.rdf
Name: Date
Units: unitless
Description: Calender date formatted as yyyy-mm-dd
http://lod.bco-dmo.org/id/dataset-parameter/748182.rdf
Name: Tank_no
Units: unitless
Description: Mesocosm tank identification number
http://lod.bco-dmo.org/id/dataset-parameter/748183.rdf
Name: TA
Units: micromoles per kilogram (umol kg-1)
Description: Total alkalinity
http://lod.bco-dmo.org/id/dataset-parameter/748184.rdf
Name: pH
Units: unitless (pH scale)
Description: pH, measured spectrophotometrically
http://lod.bco-dmo.org/id/dataset-parameter/748185.rdf
Name: Salinity
Units: PSU
Description: Salinity
http://lod.bco-dmo.org/id/dataset-parameter/748186.rdf
Name: Temperature
Units: degrees Celsius
Description: Temperature
http://lod.bco-dmo.org/id/dataset-parameter/748187.rdf
Name: Light
Units: micromoles photons per meter squared per second (umol photons m-2 sec -1)
Description: Irradiance
GB/NERC/BODC > British Oceanographic Data Centre, Natural Environment Research Council, United Kingdom
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
4993
https://darchive.mblwhoilibrary.org/bitstream/1912/24845/1/dataset-748140_doo-et-al-2018-coral-reefs-mesocosm-chemistry-data__v1.tsv
download
https://doi.org/10.1575/1912/bco-dmo.748140.1
download
onLine
dataset
<p><strong>Collection and experimental setup methods extracted from Doo et al. (2018):</strong><br />
Colony collection: In January 2017, 48 colonies of Pocillopora verrucosa (Ellis and Solander 1786) were collected randomly on scuba from 5 m depth on the north shore of Mo’orea, French Polynesia (17° 28'&nbsp;33"S, 149° 49' 20"W).&nbsp;Following 5 d of acclimation, 24 of the corals were selected randomly for removal of all trapeziid crabs and alpheid shrimps&nbsp;("minus-ectosymbiont") by probing with a wooden stick (3 mm diameter). Crabs and shrimp were left in the other 24 corals ("plus-ectosymbiont"), which were subjected to a procedural control in which they were probed with a wooden stick.</p>
<p>Incubation setup:&nbsp;Twelve mesocosm tanks (150 L volume with sand-filtered seawater pumped from 14 m depth in Cooks’ Bay and supplied to the tanks at ~200 mL min−1) were used in this experiment, with four colonies per tank in a split-plot design contrasting plus-ectosymbiont (n = 2 colonies/tank) and minus-ectosymbiont (n = 2 colonies/tank) corals.</p>
<p><strong>Daily measures of salinity, pH, and total alkalinity (TA): </strong><br />
Temperature was recorded with a thermometer (± 0.05 degrees C; ThermoFisher Traceable) and salinity was measured with a bench-top conductivity meter (± 0.1 psu, YSI 3100). TA and pH were measured within one hour of sample collection. Seawater collected for TA was filtered (0.45 um; Chanson and Millero, 2007) and analyzed using potentiometric titrations with 0.1-N HCl using an automatic titrator (Mettler Toledo T50) (Dickson et al., 2007). Seawater pH was measured with spectrophotometric methods (Nemzer and Dickson, 2005).</p>
Specified by the Principal Investigator(s)
<p>BCO-DMO Processing:<br />
- replaced spaces with underscores in parameter names;<br />
- reformatted date from mm/dd/yyyy to yyyy-mm-dd;<br />
- replaced blanks (missing data) with "nd" (no data).</p>
Specified by the Principal Investigator(s)
asNeeded
7.x-1.1
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
Unavailable
508-289-2009
WHOI MS#36
Woods Hole
MA
02543
USA
info@bco-dmo.org
http://www.bco-dmo.org
Monday - Friday 8:00am - 5:00pm
For questions regarding this resource, please contact BCO-DMO via the email address provided.
pointOfContact
Mettler Toledo T50
Mettler Toledo T50
PI Supplied Instrument Name: Mettler Toledo T50 Instrument Name: Automatic titrator Instrument Short Name:Automatic titrator Instrument Description: Instruments that incrementally add quantified aliquots of a reagent to a sample until the end-point of a chemical reaction is reached. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB12/
Li-Cor LI-1400 m and 4p LI-193 sensors
Li-Cor LI-1400 m and 4p LI-193 sensors
PI Supplied Instrument Name: Li-Cor LI-1400 m and 4p LI-193 sensors Instrument Name: Light Meter Instrument Short Name:Light Meter Instrument Description: Light meters are instruments that measure light intensity. Common units of measure for light intensity are umol/m2/s or uE/m2/s (micromoles per meter squared per second or microEinsteins per meter squared per second). (example: LI-COR 250A)
PI Supplied Instrument Name: PI Supplied Instrument Description:pH was measured with a spectrophotometer Instrument Name: Spectrophotometer Instrument Short Name:Spectrophotometer Instrument Description: An instrument used to measure the relative absorption of electromagnetic radiation of different wavelengths in the near infra-red, visible and ultraviolet wavebands by samples. Community Standard Description: http://vocab.nerc.ac.uk/collection/L05/current/LAB20/
YSI 3100
YSI 3100
PI Supplied Instrument Name: YSI 3100 Instrument Name: Conductivity Meter Instrument Short Name:Conductivity Meter Instrument Description: Conductivity Meter - An electrical conductivity meter (EC meter) measures the electrical conductivity in a solution. Commonly used in hydroponics, aquaculture and freshwater systems to monitor the amount of nutrients, salts or impurities in the water.
ThermoFisher Traceable
ThermoFisher Traceable
PI Supplied Instrument Name: ThermoFisher Traceable Instrument Name: digital thermometer Instrument Short Name: Instrument Description: An instrument that measures temperature digitally.