bcodmo_dataset_924260_v1 eng UTF8 dataset service Adam Shepherd BCO-DMO 508-289-2772 266 Woods Hole Rd. MS#36 Woods Hole MA 02543 USA erddap@bco-dmo.org pointOfContact 2026-10-18 ISO 19115-2 Geographic Information - Metadata Part 2 Extensions for Imagery and Gridded Data ISO 19115-2:2009(E) 3 column row vertical [NCBI accession numbers for S. arcuata and S. meunieri] - NCBI accession numbers from a study of two tintinnid ciliate species, Schmidingerella arcuata and Schmidingerella meunieri (Collaborative Research: Combining single-cell and community 'omics' to test hypotheses about diversity and function of planktonic ciliates) 2026-10-18 creation erddap.bco-dmo.org bcodmo_dataset_924260_v1 BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/924260 information web browser Background Information Background information from the source information originator Many ciliates express their genes only after "unscrambling" them from the genome (portions of the gene may be reversed in the genome or expressed in a different order from what is in the genome). Because the scrambling process would have to be unique to a given species, we can use genome/transcriptome comparisons of single cells to define species boundaries. We showed that two tintinnid ciliate species that look almost identical, Schmidingerella arcuata and S. meunieri, scramble and unscramble their genes differently in the step before transcription, verifying that they represent two distinct biological species. We are also using the single-cell -omics data to better understand the evolutionary relationships (phylogenomics) among tintinnids and related planktonic ciliates. The information in this dataset indicates how to access the sequence data from NCBI. BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/924260 information web browser Background Information Background information from the source information pointOfContact earth science atmosphere ocean biosphere biology environment theme BCO-DMO project latitude longitude depth theme CF The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information. BCO-DMO largerWorkCitation project eng geoscientificInformation 1 -122.7 -72.06 41.31 48.5 -0.0 -0.0 [NCBI accession numbers for S. arcuata and S. meunieri] - NCBI accession numbers from a study of two tintinnid ciliate species, Schmidingerella arcuata and Schmidingerella meunieri (Collaborative Research: Combining single-cell and community 'omics' to test hypotheses about diversity and function of planktonic ciliates) 2026-10-18 creation BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/924260 information web browser Background Information Background information from the source information originator Many ciliates express their genes only after "unscrambling" them from the genome (portions of the gene may be reversed in the genome or expressed in a different order from what is in the genome). Because the scrambling process would have to be unique to a given species, we can use genome/transcriptome comparisons of single cells to define species boundaries. We showed that two tintinnid ciliate species that look almost identical, Schmidingerella arcuata and S. meunieri, scramble and unscramble their genes differently in the step before transcription, verifying that they represent two distinct biological species. We are also using the single-cell -omics data to better understand the evolutionary relationships (phylogenomics) among tintinnids and related planktonic ciliates. The information in this dataset indicates how to access the sequence data from NCBI. ERDDAP tabledap 1 -122.7 -72.06 41.31 48.5 -0.0 -0.0 tight ERDDAPtabledapDatasetQueryAndAccess https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924260_v1 ERDDAP:tabledap ERDDAP-tabledap ERDDAP's tabledap service (a flavor of OPeNDAP) for tabular (sequence) data. Add different extensions (e.g., .html, .graph, .das, .dds) to the base URL for different purposes. download [NCBI accession numbers for S. arcuata and S. meunieri] - NCBI accession numbers from a study of two tintinnid ciliate species, Schmidingerella arcuata and Schmidingerella meunieri (Collaborative Research: Combining single-cell and community 'omics' to test hypotheses about diversity and function of planktonic ciliates) 2026-10-18 creation BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/924260 information web browser Background Information Background information from the source information originator Many ciliates express their genes only after "unscrambling" them from the genome (portions of the gene may be reversed in the genome or expressed in a different order from what is in the genome). Because the scrambling process would have to be unique to a given species, we can use genome/transcriptome comparisons of single cells to define species boundaries. We showed that two tintinnid ciliate species that look almost identical, Schmidingerella arcuata and S. meunieri, scramble and unscramble their genes differently in the step before transcription, verifying that they represent two distinct biological species. We are also using the single-cell -omics data to better understand the evolutionary relationships (phylogenomics) among tintinnids and related planktonic ciliates. The information in this dataset indicates how to access the sequence data from NCBI. OPeNDAP 1 -122.7 -72.06 41.31 48.5 -0.0 -0.0 tight OPeNDAPDatasetQueryAndAccess https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924260_v1 OPeNDAP:OPeNDAP OPeNDAP An OPeNDAP service for tabular (sequence) data. Add different extensions (e.g., .html, .das, .dds) to the base URL for different purposes. download physicalMeasurement species String Species date String Date NCBI_BioprojectProject_ID String Ncbi_bioprojectproject_id Sample_Accession String Sample_accession Sequence_Accession String Sequence_accession sample String Sample other_links String Other_links Adam Shepherd BCO-DMO 508-289-2772 266 Woods Hole Rd. MS#36 Woods Hole MA 02543 USA erddap@bco-dmo.org distributor OPeNDAP DAP/2.0 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924260_v1.html order Data Subset Form ERDDAP's version of the OPeNDAP .html web page for this dataset. Specify a subset of the dataset and download the data via OPeNDAP or in many different file types. download https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_924260_v1.graph order Make-A-Graph Form ERDDAP's Make-A-Graph .html web page for this dataset. Create an image with a map or graph of a subset of the data. mapDigital This record was created from dataset metadata by ERDDAP Version 2.22