bcodmo_dataset_998962_v1 eng UTF8 dataset service Adam Shepherd BCO-DMO 508-289-2772 266 Woods Hole Rd. MS#36 Woods Hole MA 02543 USA erddap@bco-dmo.org pointOfContact 2026-06-25 ISO 19115-2 Geographic Information - Metadata Part 2 Extensions for Imagery and Gridded Data ISO 19115-2:2009(E) 2 column row [Co-phylogeny of Perkinsus-Crassostrea] - RADseq SNP genotypes of Perkinsus marinus and Crassostrea virginica from the Gulf of Mexico and eastern Atlantic shorelines collected from 2011-2019 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite) 2026-06-25 creation erddap.bco-dmo.org bcodmo_dataset_998962_v1 BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/998962 information web browser Background Information Background information from the source information originator For host–parasite interactions, genotype-by-sequencing can allow the simultaneous examination of host and parasite genomes and can yield insight into co-evolutionary processes. The eastern oyster, Crassostrea virginica, is among the most important aquacultured species in the United States. Natural and farmed oyster populations can be heavily impacted by ‘dermo' disease caused by an alveolate protist, Perkinsus marinus. Here, we used restricted site-associated DNA sequencing (RADseq) to simultaneously examine the spatial population genetic structure of host and parasite. We analyzed 393 single-nucleotide polymorphisms (SNPs) for P. marinus and 52,100 SNPs for C. virginica from 36 individual oysters from the Gulf of Mexico (GOM) and mid-Atlantic coastline. This dataset includes metadata, methods, links to published code and processed data used to generate figures for results publication Weatherup et al. (2024, doi:10.1017/S0031182024000611) titled "Co-phylogeographic structure in a disease-causing parasite and its oyster host." This dataset also includes genetic accession identifiers for sequence data contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA), available under BioProject PRJNA1074361. BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/998962 information web browser Background Information Background information from the source information pointOfContact earth science atmosphere ocean biosphere biology environment theme BCO-DMO project latitude longitude theme CF The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information. BCO-DMO largerWorkCitation project eng geoscientificInformation 1 -90.0 -75.66 29.24 37.81 [Co-phylogeny of Perkinsus-Crassostrea] - RADseq SNP genotypes of Perkinsus marinus and Crassostrea virginica from the Gulf of Mexico and eastern Atlantic shorelines collected from 2011-2019 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite) 2026-06-25 creation BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/998962 information web browser Background Information Background information from the source information originator For host–parasite interactions, genotype-by-sequencing can allow the simultaneous examination of host and parasite genomes and can yield insight into co-evolutionary processes. The eastern oyster, Crassostrea virginica, is among the most important aquacultured species in the United States. Natural and farmed oyster populations can be heavily impacted by ‘dermo' disease caused by an alveolate protist, Perkinsus marinus. Here, we used restricted site-associated DNA sequencing (RADseq) to simultaneously examine the spatial population genetic structure of host and parasite. We analyzed 393 single-nucleotide polymorphisms (SNPs) for P. marinus and 52,100 SNPs for C. virginica from 36 individual oysters from the Gulf of Mexico (GOM) and mid-Atlantic coastline. This dataset includes metadata, methods, links to published code and processed data used to generate figures for results publication Weatherup et al. (2024, doi:10.1017/S0031182024000611) titled "Co-phylogeographic structure in a disease-causing parasite and its oyster host." This dataset also includes genetic accession identifiers for sequence data contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA), available under BioProject PRJNA1074361. ERDDAP tabledap 1 -90.0 -75.66 29.24 37.81 tight ERDDAPtabledapDatasetQueryAndAccess https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998962_v1 ERDDAP:tabledap ERDDAP-tabledap ERDDAP's tabledap service (a flavor of OPeNDAP) for tabular (sequence) data. Add different extensions (e.g., .html, .graph, .das, .dds) to the base URL for different purposes. download [Co-phylogeny of Perkinsus-Crassostrea] - RADseq SNP genotypes of Perkinsus marinus and Crassostrea virginica from the Gulf of Mexico and eastern Atlantic shorelines collected from 2011-2019 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite) 2026-06-25 creation BCO-DMO info@bco-dmo.org https://osprey.bco-dmo.org/dataset/998962 information web browser Background Information Background information from the source information originator For host–parasite interactions, genotype-by-sequencing can allow the simultaneous examination of host and parasite genomes and can yield insight into co-evolutionary processes. The eastern oyster, Crassostrea virginica, is among the most important aquacultured species in the United States. Natural and farmed oyster populations can be heavily impacted by ‘dermo' disease caused by an alveolate protist, Perkinsus marinus. Here, we used restricted site-associated DNA sequencing (RADseq) to simultaneously examine the spatial population genetic structure of host and parasite. We analyzed 393 single-nucleotide polymorphisms (SNPs) for P. marinus and 52,100 SNPs for C. virginica from 36 individual oysters from the Gulf of Mexico (GOM) and mid-Atlantic coastline. This dataset includes metadata, methods, links to published code and processed data used to generate figures for results publication Weatherup et al. (2024, doi:10.1017/S0031182024000611) titled "Co-phylogeographic structure in a disease-causing parasite and its oyster host." This dataset also includes genetic accession identifiers for sequence data contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA), available under BioProject PRJNA1074361. OPeNDAP 1 -90.0 -75.66 29.24 37.81 tight OPeNDAPDatasetQueryAndAccess https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998962_v1 OPeNDAP:OPeNDAP OPeNDAP An OPeNDAP service for tabular (sequence) data. Add different extensions (e.g., .html, .das, .dds) to the base URL for different purposes. download physicalMeasurement BioSample String Biosample sample_name String Sample_name organism String Organism isolate String Isolate host String Host isolation_source String Isolation_source geo_loc_name String Geo_loc_name tissue String Tissue date_collection String Date_collection siteName String Sitename State String State Region String Region Region2 String Region2 Storage String Storage Accesion String Accesion BioProject String Bioproject Adam Shepherd BCO-DMO 508-289-2772 266 Woods Hole Rd. MS#36 Woods Hole MA 02543 USA erddap@bco-dmo.org distributor OPeNDAP DAP/2.0 https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998962_v1.html order Data Subset Form ERDDAP's version of the OPeNDAP .html web page for this dataset. Specify a subset of the dataset and download the data via OPeNDAP or in many different file types. download https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998962_v1.graph order Make-A-Graph Form ERDDAP's Make-A-Graph .html web page for this dataset. Create an image with a map or graph of a subset of the data. mapDigital This record was created from dataset metadata by ERDDAP Version 2.22