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Dataset Title:	[IUE of marine AOA under different temp and FE] - Iron use efficiency (IUE) of the model marine ammonia-oxidizing archaea (AOA), Nitrosopumilus maritimus, under controlled laboratory conditions across a range of temperatures and iron concentrations (Collaborative Research: The impact of ocean warming on bioactive trace metal requirements and use efficiencies of marine nitrifying microorganisms)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_1005573_v1)
Information:	Summary | License | Metadata | Background | Files | Make a graph

 

Variable	Optional Constraint #1		Optional Constraint #2		Minimum	Maximum
Condition (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Iron limited"	"Iron replete"
total_iron_concentration (nanomole per liter (nM))	!= =~ <= >= = < >		!= =~ <= >= = < >		250.0	1250.0
Temperature (degrees Celsius (°C))	!= =~ <= >= = < >		!= =~ <= >= = < >		23.0	32.0
POC (micromole carbon per liter (μmol C L⁻¹))	!= =~ <= >= = < >		!= =~ <= >= = < >		6.937911	42.23716
POC_std (micromole carbon per liter (μmol C L⁻¹))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.3982173	4.123577
Fe (nanomole per liter (nM))	!= =~ <= >= = < >		!= =~ <= >= = < >		4.970169	32.57187
Fe_std (nanomole per liter (nM))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.2046685	4.539876
Fe_C_ratio (micromole per mole (μmol mol⁻¹))	!= =~ <= >= = < >		!= =~ <= >= = < >		196.6265	1629.901
Fe_C_ratio_std (micromole per mole (μmol mol⁻¹))	!= =~ <= >= = < >		!= =~ <= >= = < >		39.63115	434.4839
Carbon_fixation (micromole carbon per liter per day (μmol C L⁻¹ d⁻¹))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.6162478	38.78683
Carbon_fixation_std (micromole carbon per liter per day (μmol C L⁻¹ d⁻¹))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.2243485	1.271145
iron_use_efficiency (micromole carbon per hour per micromole iron (μmol C h⁻¹ μmol Fe⁻¹))	!= =~ <= >= = < >		!= =~ <= >= = < >		5.27038	67.75703
iron_use_efficiency_std (micromole carbon per hour per micromole iron (μmol C h⁻¹ μmol Fe⁻¹))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.4163427	12.08571
Replicates (count)	!= =~ <= >= = < >		!= =~ <= >= = < >		3	3

 

Server-side Functions

distinct()

orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" Condition total_iron_concentration Temperature POC POC_std Fe Fe_std Fe_C_ratio Fe_C_ratio_std Carbon_fixation Carbon_fixation_std iron_use_efficiency iron_use_efficiency_std Replicates Condition total_iron_concentration Temperature POC POC_std Fe Fe_std Fe_C_ratio Fe_C_ratio_std Carbon_fixation Carbon_fixation_std iron_use_efficiency iron_use_efficiency_std Replicates Condition total_iron_concentration Temperature POC POC_std Fe Fe_std Fe_C_ratio Fe_C_ratio_std Carbon_fixation Carbon_fixation_std iron_use_efficiency iron_use_efficiency_std Replicates Condition total_iron_concentration Temperature POC POC_std Fe Fe_std Fe_C_ratio Fe_C_ratio_std Carbon_fixation Carbon_fixation_std iron_use_efficiency iron_use_efficiency_std Replicates Condition total_iron_concentration Temperature POC POC_std Fe Fe_std Fe_C_ratio Fe_C_ratio_std Carbon_fixation Carbon_fixation_std iron_use_efficiency iron_use_efficiency_std Replicates ")

File type: (more information) .asc - View OPeNDAP-style ISO-8859-1 comma-separated text. .csv - Download a ISO-8859-1 comma-separated text table (line 1: names; line 2: units; ISO 8601 times). .csvp - Download a ISO-8859-1 .csv file with line 1: name (units). Times are ISO 8601 strings. .csv0 - Download a ISO-8859-1 .csv file without column names or units. Times are ISO 8601 strings. .dataTable - A JSON file formatted for use with the Google Visualization client library (Google Charts). .das - View the dataset's metadata via an ISO-8859-1 OPeNDAP Dataset Attribute Structure (DAS). .dds - View the dataset's structure via an ISO-8859-1 OPeNDAP Dataset Descriptor Structure (DDS). .dods - OPeNDAP clients use this to download the data in the DODS binary format. .esriCsv - Download a ISO_8859_1 .csv file for ESRI's ArcGIS 9.x and below (separate date and time columns). .fgdc - View the dataset's UTF-8 FGDC .xml metadata. .geoJson - Download longitude,latitude,otherColumns data as a UTF-8 GeoJSON .json file. .graph - View a Make A Graph web page. .help - View a web page with a description of tabledap. .html - View an OPeNDAP-style HTML Data Access Form. .htmlTable - View a UTF-8 .html web page with the data in a table. Times are ISO 8601 strings. .iso19115 - View the dataset's ISO 19115-2/19139 UTF-8 .xml metadata. .itx - Download an ISO-8859-1 Igor Text File. Each response column becomes a wave. .json - View a table-like UTF-8 JSON file (missing value = 'null'; times are ISO 8601 strings). .jsonlCSV1 - View a UTF-8 JSON Lines CSV file with column names on line 1 (mv = 'null'; times are ISO 8601 strings). .jsonlCSV - View a UTF-8 JSON Lines CSV file without column names (mv = 'null'; times are ISO 8601 strings). .jsonlKVP - View a UTF-8 JSON Lines file with Key:Value pairs (missing value = 'null'; times are ISO 8601 strings). .mat - Download a MATLAB binary file. .nc - Download a flat, table-like, NetCDF-3 binary file with COARDS/CF/ACDD metadata. .ncHeader - View the UTF-8 header (the metadata) for the NetCDF-3 .nc file. .ncCF - Download a NetCDF-3 CF Discrete Sampling Geometries file (Contiguous Ragged Array). .ncCFHeader - View the UTF-8 header (the metadata) for the .ncCF file. .ncCFMA - Download a NetCDF-3 CF Discrete Sampling Geometries file (Multidimensional Array). .ncCFMAHeader - View the UTF-8 header (the metadata) for the .ncCFMA file. .nccsv - Download a NetCDF-3-like 7-bit ASCII NCCSV .csv file with COARDS/CF/ACDD metadata. .nccsvMetadata - View the dataset's metadata as the top half of a 7-bit ASCII NCCSV .csv file. .ncoJson - Download a UTF-8 NCO lvl=2 JSON file with COARDS/CF/ACDD metadata. .odvTxt - Download longitude,latitude,time,otherColumns as an ISO-8859-1 ODV Generic Spreadsheet File (.txt). .subset - View an HTML form which uses faceted search to simplify picking subsets of the data. .tsv - Download a ISO-8859-1 tab-separated text table (line 1: names; line 2: units; ISO 8601 times). .tsvp - Download a ISO-8859-1 .tsv file with line 1: name (units). Times are ISO 8601 strings. .tsv0 - Download a ISO-8859-1 .tsv file without column names or units. Times are ISO 8601 strings. .wav - Download a .wav audio file. All columns must be numeric and of the same type. .xhtml - View a UTF-8 XHTML (XML) file with the data in a table. Times are ISO 8601 strings. .kml - View a .kml file, suitable for Google Earth. .smallPdf - View a small .pdf image file with a graph or map. .pdf - View a standard, medium-sized .pdf image file with a graph or map. .largePdf - View a large .pdf image file with a graph or map. .smallPng - View a small .png image file with a graph or map. .png - View a standard, medium-sized .png image file with a graph or map. .largePng - View a large .png image file with a graph or map. .transparentPng - View a .png image file (just the data, without axes, landmask, or legend).

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Condition {
    String long_name "Condition";
    String units "unitless";
  }
  total_iron_concentration {
    Float32 actual_range 250.0, 1250.0;
    String long_name "Total_iron_concentration";
    String units "nanomole per liter (nM)";
  }
  Temperature {
    Float32 actual_range 23.0, 32.0;
    String long_name "Temperature";
    String units "degrees Celsius (°C)";
  }
  POC {
    Float32 actual_range 6.937911, 42.23716;
    String long_name "Poc";
    String units "micromole carbon per liter (μmol C L⁻¹)";
  }
  POC_std {
    Float32 actual_range 0.3982173, 4.123577;
    String long_name "Poc_std";
    String units "micromole carbon per liter (μmol C L⁻¹)";
  }
  Fe {
    Float32 actual_range 4.970169, 32.57187;
    String long_name "Fe";
    String units "nanomole per liter (nM)";
  }
  Fe_std {
    Float32 actual_range 0.2046685, 4.539876;
    String long_name "Fe_std";
    String units "nanomole per liter (nM)";
  }
  Fe_C_ratio {
    Float32 actual_range 196.6265, 1629.901;
    String long_name "Fe_c_ratio";
    String units "micromole per mole (μmol mol⁻¹)";
  }
  Fe_C_ratio_std {
    Float32 actual_range 39.63115, 434.4839;
    String long_name "Fe_c_ratio_std";
    String units "micromole per mole (μmol mol⁻¹)";
  }
  Carbon_fixation {
    Float32 actual_range 0.6162478, 38.78683;
    String long_name "Carbon_fixation";
    String units "micromole carbon per liter per day (μmol C L⁻¹ d⁻¹)";
  }
  Carbon_fixation_std {
    Float32 actual_range 0.2243485, 1.271145;
    String long_name "Carbon_fixation_std";
    String units "micromole carbon per liter per day (μmol C L⁻¹ d⁻¹)";
  }
  iron_use_efficiency {
    Float32 actual_range 5.27038, 67.75703;
    String long_name "Iron_use_efficiency";
    String units "micromole carbon per hour per micromole iron (μmol C h⁻¹ μmol Fe⁻¹)";
  }
  iron_use_efficiency_std {
    Float32 actual_range 0.4163427, 12.08571;
    String long_name "Iron_use_efficiency_std";
    String units "micromole carbon per hour per micromole iron (μmol C h⁻¹ μmol Fe⁻¹)";
  }
  Replicates {
    Int32 actual_range 3, 3;
    String long_name "Replicates";
    String units "count";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.1005573.1";
    String history 
"2026-09-20T03:58:11Z (local files)
2026-09-20T03:58:11Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_1005573_v1.html";
    String infoUrl "https://osprey.bco-dmo.org/dataset/1005573";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String sourceUrl "(local files)";
    String summary "This dataset quantifies iron use efficiency (IUE) of the model marine ammonia-oxidizing archaea, Nitrosopumilus maritimus, under controlled laboratory conditions across a range of temperatures (23, 27, and 32 degrees Celsius) and iron concentrations (iron-replete, 1250 nM; iron-limited, 250 nM). Measurements include carbon fixation rates derived from 14C-bicarbonate incorporation assays and cellular iron quotas determined by inductively coupled plasma mass spectrometry (ICP-MS), from which IUE was calculated. Experiments were conducted in batch cultures with biological replicates for each treatment to assess the interactive effects of temperature and iron limitation on AOA physiology.";
    String title "[IUE of marine AOA under different temp and FE] - Iron use efficiency (IUE) of the model marine ammonia-oxidizing archaea (AOA), Nitrosopumilus maritimus, under controlled laboratory conditions across a range of temperatures and iron concentrations (Collaborative Research: The impact of ocean warming on bioactive trace metal requirements and use efficiencies of marine nitrifying microorganisms)";
  }
}

 

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tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
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https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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