Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [nutrients_WB] - Nutrients; silicate, nitrate plus nitrite, and phosphate from R/V Weatherbird II WB0409, WB0413, WB0506, WB0508 in the Sargasso Sea from 2004- 2005 (EDDIES project) (Eddies Dynamics, Mixing, Export, and Species composition) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_3021) |
| Information: | Summary
| License
| ISO 19115
| Metadata
| Background
| Files
| Make a graph
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Attributes {
s {
Cruise_ID {
String bcodmo_name "cruise_id";
String description "cruise ID designation code";
String long_name "Cruise ID";
String units "alphanumeric";
}
sta {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 1, 39;
String bcodmo_name "sta";
String description "station number";
String long_name "Sta";
String units "dimensionless";
}
Nis {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 1, 24;
String bcodmo_name "bottle";
String description "Niskin bottle number";
String long_name "Nis";
String units "dimensionless";
}
Nis_WB {
Int32 _FillValue 2147483647;
Int32 actual_range 904090101, 905083924;
String bcodmo_name "sample";
String description "unique WB sample identification (9&&&&$$@@ where &&&& is cruise number, $$=ctd station number, @@=niskin number";
String long_name "Nis WB";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/ACYC/";
String units "dimensionless";
}
depth {
String _CoordinateAxisType "Height";
String _CoordinateZisPositive "down";
Float64 _FillValue NaN;
Float64 actual_range 2.2, 1200.9;
String axis "Z";
String bcodmo_name "depth";
Float64 colorBarMaximum 8000.0;
Float64 colorBarMinimum -8000.0;
String colorBarPalette "TopographyDepth";
String description "depth";
String ioos_category "Location";
String long_name "Depth";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/DEPH/";
String positive "down";
String standard_name "depth";
String units "m";
}
depth_n {
Int16 _FillValue 32767;
Int16 actual_range 0, 1200;
String bcodmo_name "depth_n";
Float64 colorBarMaximum 8000.0;
Float64 colorBarMinimum -8000.0;
String colorBarPalette "TopographyDepth";
String description "depth, nominal";
String long_name "Depth";
String standard_name "depth";
String units "meters";
}
SiO4_umol_kg {
Float32 _FillValue NaN;
Float32 actual_range 0.5, 16.24;
String bcodmo_name "SiOH_4";
String description "Silicate";
String long_name "Si O4 Umol Kg";
String units "micromoles/kilogram";
}
NO3_NO2_umol_kg {
Float32 _FillValue NaN;
Float32 actual_range 0.0, 26.65;
String bcodmo_name "NO3_NO2";
Float64 colorBarMaximum 50.0;
Float64 colorBarMinimum 0.0;
String description "Nitrate plus Nitrite";
String long_name "Mole Concentration Of Nitrate In Sea Water";
String units "micromoles/kilogram";
}
PO4_umol_kg {
Float32 _FillValue NaN;
Float32 actual_range 0.0, 1.97;
String bcodmo_name "PO4";
String description "Phosphate";
String long_name "Mass Concentration Of Phosphate In Sea Water";
String units "micromoles/kilogram";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv";
String acquisition_description "\"\"";
String cdm_data_type "Other";
String comment
"version 08 October 2007
(previous version 12 January 2007)
PI: Nick Bates (Bermuda Biological Station for Research)
dataset: Nutrients; silicate, nitrate plus nitrite, phospate
from Niskin bottle samples taken on all EDDIES WB cruises";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2010-06-16T20:40:39Z";
String date_modified "2020-01-20T16:42:35Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.3021.1";
Float64 geospatial_vertical_max 1200.9;
Float64 geospatial_vertical_min 2.2;
String geospatial_vertical_positive "down";
String geospatial_vertical_units "m";
String history
"2024-11-19T13:28:20Z (local files)
2024-11-19T13:28:20Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3021.html";
String infoUrl "https://www.bco-dmo.org/dataset/3021";
String institution "BCO-DMO";
String instruments_0_acronym "Niskin bottle";
String instruments_0_dataset_instrument_nid "5443";
String instruments_0_description "A Niskin bottle (a next generation water sampler based on the Nansen bottle) is a cylindrical, non-metallic water collection device with stoppers at both ends. The bottles can be attached individually on a hydrowire or deployed in 12, 24 or 36 bottle Rosette systems mounted on a frame and combined with a CTD. Niskin bottles are used to collect discrete water samples for a range of measurements including pigments, nutrients, plankton, etc.";
String instruments_0_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L22/current/TOOL0412/";
String instruments_0_instrument_name "Niskin bottle";
String instruments_0_instrument_nid "413";
String instruments_0_supplied_name "Niskin bottle";
String keywords "bco, bco-dmo, biological, chemical, chemistry, concentration, cruise, Cruise_ID, data, dataset, depth, depth_n, dmo, earth, Earth Science > Oceans > Ocean Chemistry > Nitrate, Earth Science > Oceans > Ocean Chemistry > Phosphate, erddap, management, mass, mass_concentration_of_phosphate_in_sea_water, mole, mole_concentration_of_nitrate_in_sea_water, n02, nis, Nis_WB, nitrate, no3, NO3_NO2_umol_kg, ocean, oceanography, oceans, office, phosphate, po4, PO4_umol_kg, preliminary, science, sea, seawater, SiO4_umol_kg, sta, umol, water";
String keywords_vocabulary "GCMD Science Keywords";
String license "https://www.bco-dmo.org/dataset/3021/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/3021";
String param_mapping "{'3021': {'depth': 'flag - depth'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/3021/parameters";
String people_0_affiliation "Bermuda Biological Station for Research";
String people_0_affiliation_acronym "BBSR";
String people_0_person_name "Nicholas Bates";
String people_0_person_nid "50655";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "Woods Hole Oceanographic Institution";
String people_1_affiliation_acronym "WHOI";
String people_1_person_name "Ms Olga Kosnyrev";
String people_1_person_nid "51238";
String people_1_role "Data Manager";
String people_1_role_type "related";
String people_2_affiliation "Woods Hole Oceanographic Institution";
String people_2_affiliation_acronym "WHOI BCO-DMO";
String people_2_person_name "Nancy Copley";
String people_2_person_nid "50396";
String people_2_role "BCO-DMO Data Manager";
String people_2_role_type "related";
String project "EDDIES";
String projects_0_acronym "EDDIES";
String projects_0_description
"The original title of this project from the NSF award is: Collaborative Research: Impacts of Eddies and Mixing on Plankton Community Structure and Biogeochemical Cycling in the Sargasso Sea\".
Prior results have documented eddy-driven transport of nutrients into the euphotic zone and the associated accumulation of chlorophyll. However, several key aspects of mesoscale upwelling events remain unresolved by the extant database, including: (1) phytoplankton physiological response, (2) changes in community structure, (3) impact on export out of the euphotic zone, (4) rates of mixing between the surface mixed layer and the base of the euphotic zone, and (5) implications for biogeochemistry and differential cycling of carbon and associated bioactive elements. This leads to the following hypotheses concerning the complex, non-linear biological regulation of elemental cycling in the ocean:
H1: Eddy-induced upwelling, in combination with diapycnal mixing in the upper ocean, introduces new nutrients into the euphotic zone.
H2: The increase in inorganic nutrients stimulates a physiological response within the phytoplankton community.
H3: Differing physiological responses of the various species bring about a shift in community structure.
H4: Changes in community structure lead to increases in export from, and changes in biogeochemical cycling within, the upper ocean.
Publications
Andrews, J.E., Hartin, C., and Buesseler, K.O.. \"7Be Analyses in Seawater by Low Background Gamma-Spectroscopy.,\" Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.
Andrews, J.E., Hartin, C., Buesseler, K.O.. \"7Be Analyses in Seawater by Low Background Gamma-Spectroscopy,\" Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.
Benitez-Nelson, C.R. and McGillicuddy, D.J.. \"Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs.,\" Deep Sea Research II, v.55, 2008, p. 1133.
Benitez-Nelson, C.R. and McGillicuddy, D.J.. \"Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs,\" Deep-Sea Research II, v.55, 2008, p. 1133.
Bibby, T.S., Gorbunov, M.Y., Wyman, K.W., Falkowski, P.G.. \"Photosynthetic community responses to upwelling in mesoscale eddies in the subtropical North Atlantic and Pacific Oceans,\" Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1310.
Buesseler, K.O., Lamborg, C., Cai, P., Escoube, R., Johnson, R., Pike, S., Masque, P., McGillicuddy, D.J., Verdeny, E.. \"Particle Fluxes Associated with Mesoscale Eddies in the Sargasso Sea,\" Deep Sea Research II, v.55, 2008, p. 1426.
Carlson, C.A., del Giorgio, P., Herdl, G.. \"Microbes and the dissipation of energy and respiration: From cells to ecosystems,\" Oceanography, v.20, 2007, p. 89.
Davis, C.S., and McGillicuddy, D.J.. \"Transatlantic Abundance of the N2-Fixing Colonial Cyanobacterium Trichodesmium,\" Science, v.312, 2006, p. 1517.
Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. \"Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea,\" Deep Sea Research II, v.55, 2008, p. 1334.
Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. \"Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea,\" Deep-Sea Research II, v.55, 2008, p. 1334.
Goldthwait, S.A. and Steinberg, D.K.. \"Elevated biomass of mesozooplankton and enhanced fecal pellet flux in cyclonic and mode-water eddies in the Sargasso Sea,\" Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1360.
Greenan, B.J.W.. \"Shear and Richardson number in a mode-water eddy,\" Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1161.
Jenkins, W.J., McGillicuddy, D.J., and Lott III, D.E.. \"The Distributions of, and Relationship Between 3 He and Nitrate in Eddies,\" Deep Sea Research II, v.55, 2008, p. 1389.
Jenkins, W.J., McGillicuddy, D.J., Lott III, D.E.. \"The Distributions of, and Relationship Between 3 He and Nitrate in Eddies,\" Deep-Sea Research II, v.55, 2008, p. 1389.
Ledwell, J.R., McGillicuddy, D.J., and Anderson, L.A.. \"Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy.,\" Deep Sea Research II, v.55, 2008, p. 1139.
Ledwell, J.R., McGillicuddy, D.J., Anderson, L.A.. \"Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy,\" Deep-Sea Research II, v.55, 2008, p. 1139.
Li, Q.P. and Hansell, D.A.. \"Intercomparison and coupling of MAGIC and LWCC techniques for trace analysis of phosphate in seawater,\" Analytical Chemica Acta, v.611, 2008, p. 68.
Li, Q.P., Hansell, D.A., McGillicuddy, D.J., Bates, N.R., Johnson, R.J.. \"Tracer-based assessment of the origin and biogeochemical transformation of a cyclonic eddy in the Sargasso Sea,\" Journal of Geophysical Research, v.113, 2008, p. 10006.
Li, Q.P., Hansell, D.A., Zhang, J.-Z.. \"Underway monitoring of nanomolar nitrate plus nitrite and phosphate in oligotrophic seawater,\" Limnology and Oceanography: Methods, v.6, 2008, p. 319.
Li, Q.P., Zhang, J.-Z., Millero, F.J., Hansell, D.A.. \"Continuous colorimetric determination of trace ammonium in seawater with a long-path liquid waveguide capillary cell,\" Marine Chemistry, v.96, 2005, p. 73.
McGillicuddy, D.J., et. al.. \"Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms,\" Science, v.316, 2007, p. 1021.
McGillicuddy, D.J., Ledwell, J.R., and Anderson, L.A.. \"Response to Comment on \"Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom\".,\" Science, v.320, 2008.
McGillicuddy, D.J., Ledwell, J.R., Anderson, L.A.. \"Response to Comment on \"Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom\",\" Science, v.320, 2008.
McGillicuddy, et. al.. \"Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms.,\" Science, v.316, 2007, p. 1021.
Mourino B., and McGillicuddy, D.J.. \"Mesoscale Variability in the Metabolic Balance of the Sargasso Sea,\" Limnology & Oceanography, v.51, 2006, p. 2675.";
String projects_0_end_date "2005-09";
String projects_0_geolocation "Sargasso Sea";
String projects_0_name "Eddies Dynamics, Mixing, Export, and Species composition";
String projects_0_project_nid "2048";
String projects_0_project_website "http://science.whoi.edu/users/olga/eddies/EDDIES_Project.html";
String projects_0_start_date "2004-06";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
String standard_name_vocabulary "CF Standard Name Table v55";
String summary "Nutrients; silicate, nitrate plus nitrite, and phosphate from R/V Weatherbird II WB0409, WB0413, WB0506, WB0508 in the Sargasso Sea from 2004-2005.";
String title "[nutrients_WB] - Nutrients; silicate, nitrate plus nitrite, and phosphate from R/V Weatherbird II WB0409, WB0413, WB0506, WB0508 in the Sargasso Sea from 2004-2005 (EDDIES project) (Eddies Dynamics, Mixing, Export, and Species composition)";
String version "1";
String xml_source "osprey2erddap.update_xml() v1.3";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.