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Dataset Title:  Mesozooplankton biomass from MOCNESS tows collected during R/V Oceanus cruises
OC415-01, OC415-03, OC404-01, OC404-04 in the Sargasso Sea, 2004-2005 (EDDIES
project)
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Institution:  BCO-DMO   (Dataset ID: bcodmo_dataset_3211)
Information:  Summary ? | License ? | ISO 19115 | Metadata | Background (external link) | Files | Make a graph
 
Variable ?   Optional
Constraint #1 ?
Optional
Constraint #2 ?
   Minimum ?
 
   Maximum ?
 
 Cruise_ID (dimensionless) ?          "OC404-1"    "OC415-3"
 date (unitless) ?          20040615    20050825
 latitude (degrees_north) ?          28.77809    33.3951
  < slider >
 longitude (degrees_east) ?          -69.367    -59.4859
  < slider >
 event_ID (dimensionless) ?          20    347
 cruise_cast_net (dimensionless) ?          4041012    4153289
 time2 (Time, hhmm) ?          "0157"    "1819"
 lat (Latitude, decimal degrees) ?          28.76298    33.4083
 lon (Longitude, decimal degrees) ?          -69.3829    -59.473
 depth_end (Depth, meters) ?          0    602
 depth (m) ?          49.0    716.0
  < slider >
 vol_filt (meter^3) ?          119.2    1334.2
 zoop_bm_5000 (milligrams/meter^3) ?          0.12928    0.65212
 zoop_bm_2000 (milligrams/meter^3) ?          0.12902    0.59082
 zoop_bm_1000 (milligrams/meter^3) ?          0.12968    1.00072
 zoop_bm_500 (milligrams/meter^3) ?          0.12913    0.74762
 zoop_bm_150 (milligrams/meter^3) ?          0.12975    0.59932
 zoop_bm_total (milligrams/meter^3) ?          0.65575    2.88097
 
Server-side Functions ?
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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Cruise_ID {
    String bcodmo_name "cruise_id";
    String description "cruise designation code";
    String long_name "Cruise ID";
    String units "dimensionless";
  }
  date {
    Int32 _FillValue 2147483647;
    Int32 actual_range 20040615, 20050825;
    String bcodmo_name "date";
    String description "date (UTC) at start of tow in YYYYMMDD format";
    String long_name "Date";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/";
    String units "unitless";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float64 _FillValue NaN;
    Float64 actual_range 28.77809, 33.3951;
    String axis "Y";
    String bcodmo_name "lat_n";
    Float64 colorBarMaximum 90.0;
    Float64 colorBarMinimum -90.0;
    String description "nominal latitiude (same as mid-depth position for the tow)";
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float64 _FillValue NaN;
    Float64 actual_range -69.367, -59.4859;
    String axis "X";
    String bcodmo_name "lon_n";
    Float64 colorBarMaximum 180.0;
    Float64 colorBarMinimum -180.0;
    String description "nominal longitude (same as mid-depth position for the tow)";
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  event_ID {
    Int16 _FillValue 32767;
    Int16 actual_range 20, 347;
    String bcodmo_name "event";
    String description "event identification number; unique within EDDIES project";
    String long_name "Event ID";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/EVTAGFL/";
    String units "dimensionless";
  }
  cruise_cast_net {
    Int32 _FillValue 2147483647;
    Int32 actual_range 4041012, 4153289;
    String bcodmo_name "unknown";
    String description "cruise_cast_net is a sample identifier unique within the EDDIES project";
    String long_name "Cruise Cast Net";
    String units "dimensionless";
  }
  time2 {
    String bcodmo_name "time";
    String description "time (UTC) at start of tow";
    String long_name "Time";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/AHMSAA01/";
    String units "hhmm";
  }
  lat {
    Float32 _FillValue NaN;
    Float32 actual_range 28.76298, 33.4083;
    String bcodmo_name "latitude";
    Float64 colorBarMaximum 90.0;
    Float64 colorBarMinimum -90.0;
    String description "latitude, average during tow (negative denotes South)";
    String long_name "Latitude";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
    String standard_name "latitude";
    String units "decimal degrees";
  }
  lon {
    Float32 _FillValue NaN;
    Float32 actual_range -69.3829, -59.473;
    String bcodmo_name "longitude";
    Float64 colorBarMaximum 180.0;
    Float64 colorBarMinimum -180.0;
    String description "longitude, average during tow (negative denotes West)";
    String long_name "Longitude";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
    String standard_name "longitude";
    String units "decimal degrees";
  }
  depth_end {
    Int16 _FillValue 32767;
    Int16 actual_range 0, 602;
    String bcodmo_name "depth_end";
    Float64 colorBarMaximum 8000.0;
    Float64 colorBarMinimum -8000.0;
    String colorBarPalette "TopographyDepth";
    String description "depth at end of tow";
    String long_name "Depth";
    String standard_name "depth";
    String units "meters";
  }
  depth {
    String _CoordinateAxisType "Height";
    String _CoordinateZisPositive "down";
    Float64 _FillValue NaN;
    Float64 actual_range 49.0, 716.0;
    String axis "Z";
    String bcodmo_name "depth_begin";
    Float64 colorBarMaximum 8000.0;
    Float64 colorBarMinimum -8000.0;
    String colorBarPalette "TopographyDepth";
    String description "depth at beginning of tow";
    String ioos_category "Location";
    String long_name "Depth";
    String positive "down";
    String standard_name "depth";
    String units "m";
  }
  vol_filt {
    Float32 _FillValue NaN;
    Float32 actual_range 119.2, 1334.2;
    String bcodmo_name "vol_filt";
    String description "volume filtered by net";
    String long_name "Vol Filt";
    String units "meter^3";
  }
  zoop_bm_5000 {
    Float32 _FillValue NaN;
    Float32 actual_range 0.12928, 0.65212;
    String bcodmo_name "unknown";
    String description "zooplankton dry weight; gt 5000 microns";
    String long_name "Zoop Bm 5000";
    String units "milligrams/meter^3";
  }
  zoop_bm_2000 {
    Float32 _FillValue NaN;
    Float32 actual_range 0.12902, 0.59082;
    String bcodmo_name "unknown";
    String description "zooplankton dry weight; 2000 to 5000 microns";
    String long_name "Zoop Bm 2000";
    String units "milligrams/meter^3";
  }
  zoop_bm_1000 {
    Float32 _FillValue NaN;
    Float32 actual_range 0.12968, 1.00072;
    String bcodmo_name "unknown";
    String description "zooplankton dry weight; 1000 to 2000 microns";
    String long_name "Zoop Bm 1000";
    String units "milligrams/meter^3";
  }
  zoop_bm_500 {
    Float32 _FillValue NaN;
    Float32 actual_range 0.12913, 0.74762;
    String bcodmo_name "unknown";
    String description "zooplankton dry weight; 500 to 1000 microns";
    String long_name "Zoop Bm 500";
    String units "milligrams/meter^3";
  }
  zoop_bm_150 {
    Float32 _FillValue NaN;
    Float32 actual_range 0.12975, 0.59932;
    String bcodmo_name "unknown";
    String description "zooplankton dry weight; 150 to 500 microns";
    String long_name "Zoop Bm 150";
    String units "milligrams/meter^3";
  }
  zoop_bm_total {
    Float32 _FillValue NaN;
    Float32 actual_range 0.65575, 2.88097;
    String bcodmo_name "unknown";
    String description "zooplankton dry weight; total";
    String long_name "Zoop Bm Total";
    String units "milligrams/meter^3";
  }
 }
  NC_GLOBAL {
    String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson";
    String acquisition_description "\"\"";
    String awards_0_award_nid "54861";
    String awards_0_award_number "OCE-0351576";
    String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0351576";
    String awards_0_funder_name "NSF Division of Ocean Sciences";
    String awards_0_funding_acronym "NSF OCE";
    String awards_0_funding_source_nid "355";
    String awards_0_program_manager "Phillip R. Taylor";
    String awards_0_program_manager_nid "50451";
    String cdm_data_type "Other";
    String comment 
"version  07 July 2011 
   
  PI: Debbie Steinberg  
  of: Virginia Institute of Marine Science (VIMS) 
   
  EDDIES Project 
  Zooplankton biomass from MOCNESS net tows";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_type "institution";
    String creator_url "https://www.bco-dmo.org/";
    String data_source "extract_data_as_tsv version 2.3  19 Dec 2019";
    String date_created "2009-09-01T12:06:06Z";
    String date_modified "2016-08-20T03:10:46Z";
    String defaultDataQuery "&amp;time&lt;now";
    String doi "10.1575/1912/4851";
    Float64 Easternmost_Easting -59.4859;
    Float64 geospatial_lat_max 33.3951;
    Float64 geospatial_lat_min 28.77809;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max -59.4859;
    Float64 geospatial_lon_min -69.367;
    String geospatial_lon_units "degrees_east";
    Float64 geospatial_vertical_max 716.0;
    Float64 geospatial_vertical_min 49.0;
    String geospatial_vertical_positive "down";
    String geospatial_vertical_units "m";
    String history 
"2022-08-12T12:07:57Z (local files)
2022-08-12T12:07:57Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_3211.html";
    String infoUrl "https://www.bco-dmo.org/dataset/3211";
    String institution "BCO-DMO";
    String instruments_0_acronym "MOC1";
    String instruments_0_dataset_instrument_nid "5454";
    String instruments_0_description "The Multiple Opening/Closing Net and Environmental Sensing System or MOCNESS is a family of net systems based on the Tucker Trawl principle. The MOCNESS-1 carries nine 1-m2 nets usually of 335 micrometer mesh and is intended for use with the macrozooplankton.  All nets are black to reduce contrast with the background.  A motor/toggle release assembly is mounted on the top portion of the frame and stainless steel cables with swaged fittings are used to attach the net bar to the toggle release.  A stepping motor in a pressure compensated case filled with oil turns the escapement crankshaft of the toggle release which sequentially releases the nets to an open then closed position on command from the surface. -- from the MOCNESS Operations Manual (1999 + 2003).";
    String instruments_0_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L22/current/NETT0097/";
    String instruments_0_instrument_name "MOCNESS1";
    String instruments_0_instrument_nid "437";
    String instruments_0_supplied_name "MOCNESS1";
    String keywords "bco, bco-dmo, biological, cast, chemical, cruise, cruise_cast_net, Cruise_ID, data, dataset, date, depth, depth_begin, depth_end, dmo, erddap, event, event_ID, filt, lat_n, latitude, lon_n, longitude, management, net, oceanography, office, preliminary, time, time2, total, vol, vol_filt, zoop, zoop_bm_1000, zoop_bm_150, zoop_bm_2000, zoop_bm_500, zoop_bm_5000, zoop_bm_total";
    String license "https://www.bco-dmo.org/dataset/3211/license";
    String metadata_source "https://www.bco-dmo.org/api/dataset/3211";
    Float64 Northernmost_Northing 33.3951;
    String param_mapping "{'3211': {'lat_n': 'flag - latitude', 'depth_begin': 'flag - depth', 'lon_n': 'flag - longitude'}}";
    String parameter_source "https://www.bco-dmo.org/mapserver/dataset/3211/parameters";
    String people_0_affiliation "Virginia Institute of Marine Science";
    String people_0_affiliation_acronym "VIMS";
    String people_0_person_name "Deborah  K. Steinberg";
    String people_0_person_nid "50855";
    String people_0_role "Principal Investigator";
    String people_0_role_type "originator";
    String people_1_affiliation "Humboldt State University";
    String people_1_affiliation_acronym "Humboldt";
    String people_1_person_name "Dr Sarah  A. Goldthwait";
    String people_1_person_nid "51348";
    String people_1_role "Scientist";
    String people_1_role_type "originator";
    String people_2_affiliation "Woods Hole Oceanographic Institution";
    String people_2_affiliation_acronym "WHOI BCO-DMO";
    String people_2_person_name "Cynthia  L. Chandler";
    String people_2_person_nid "50637";
    String people_2_role "BCO-DMO Data Manager";
    String people_2_role_type "related";
    String project "EDDIES";
    String projects_0_acronym "EDDIES";
    String projects_0_description 
"The original title of this project from the NSF award is: Collaborative Research: Impacts of Eddies and Mixing on Plankton Community Structure and Biogeochemical Cycling in the Sargasso Sea\".
Prior results have documented eddy-driven transport of nutrients into the euphotic zone and the associated accumulation of chlorophyll. However, several key aspects of mesoscale upwelling events remain unresolved by the extant database, including: (1) phytoplankton physiological response, (2) changes in community structure, (3) impact on export out of the euphotic zone, (4) rates of mixing between the surface mixed layer and the base of the euphotic zone, and (5) implications for biogeochemistry and differential cycling of carbon and associated bioactive elements. This leads to the following hypotheses concerning the complex, non-linear biological regulation of elemental cycling in the ocean:
H1: Eddy-induced upwelling, in combination with diapycnal mixing in the upper ocean, introduces new nutrients into the euphotic zone.
H2: The increase in inorganic nutrients stimulates a physiological response within the phytoplankton community.
H3: Differing physiological responses of the various species bring about a shift in community structure.
H4: Changes in community structure lead to increases in export from, and changes in biogeochemical cycling within, the upper ocean.
Publications
Andrews, J.E., Hartin, C., and Buesseler, K.O.. \"7Be Analyses in Seawater by Low Background Gamma-Spectroscopy.,\" Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.
Andrews, J.E., Hartin, C., Buesseler, K.O.. \"7Be Analyses in Seawater by Low Background Gamma-Spectroscopy,\" Journal of Radioanalytical and Nuclear Chemistry, v.277, 2008, p. 253.
Benitez-Nelson, C.R. and McGillicuddy, D.J.. \"Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs.,\" Deep Sea Research II, v.55, 2008, p. 1133.
Benitez-Nelson, C.R. and McGillicuddy, D.J.. \"Mesoscale Physical-Biological-Biogeochemical Linkages in the Open Ocean: An Introduction to the Results of the E-Flux and EDDIES Programs,\" Deep-Sea Research II, v.55, 2008, p. 1133.
Bibby, T.S., Gorbunov, M.Y., Wyman, K.W., Falkowski, P.G.. \"Photosynthetic community responses to upwelling in mesoscale eddies in the subtropical North Atlantic and Pacific Oceans,\" Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1310.
Buesseler, K.O., Lamborg, C., Cai, P., Escoube, R., Johnson, R., Pike, S., Masque, P., McGillicuddy, D.J., Verdeny, E.. \"Particle Fluxes Associated with Mesoscale Eddies in the Sargasso Sea,\" Deep Sea Research II, v.55, 2008, p. 1426.
Carlson, C.A., del Giorgio, P., Herdl, G.. \"Microbes and the dissipation of energy and respiration: From cells to ecosystems,\" Oceanography, v.20, 2007, p. 89.
Davis, C.S., and McGillicuddy, D.J.. \"Transatlantic Abundance of the N2-Fixing Colonial Cyanobacterium Trichodesmium,\" Science, v.312, 2006, p. 1517.
Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. \"Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea,\" Deep Sea Research II, v.55, 2008, p. 1334.
Ewart, C.S., Meyers, M.K., Wallner, E., McGillicuddy, D.J., Carlson, C.A.. \"Microbial Dynamics in Cyclonic and Anticyclonic Mode-Water Eddies in the Northwestern Sargasso Sea,\" Deep-Sea Research II, v.55, 2008, p. 1334.
Goldthwait, S.A. and Steinberg, D.K.. \"Elevated biomass of mesozooplankton and enhanced fecal pellet flux in cyclonic and mode-water eddies in the Sargasso Sea,\" Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1360.
Greenan, B.J.W.. \"Shear and Richardson number in a mode-water eddy,\" Deep-Sea Research Part II: Topical Studies in Oceanography, v.55, 2008, p. 1161.
Jenkins, W.J., McGillicuddy, D.J., and Lott III, D.E.. \"The Distributions of, and Relationship Between 3 He and Nitrate in Eddies,\" Deep Sea Research II, v.55, 2008, p. 1389.
Jenkins, W.J., McGillicuddy, D.J., Lott III, D.E.. \"The Distributions of, and Relationship Between 3 He and Nitrate in Eddies,\" Deep-Sea Research II, v.55, 2008, p. 1389.
Ledwell, J.R., McGillicuddy, D.J., and Anderson, L.A.. \"Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy.,\" Deep Sea Research II, v.55, 2008, p. 1139.
Ledwell, J.R., McGillicuddy, D.J., Anderson, L.A.. \"Nutrient Flux into an Intense Deep Chlorophyll Layer in a Mode-water Eddy,\" Deep-Sea Research II, v.55, 2008, p. 1139.
Li, Q.P. and Hansell, D.A.. \"Intercomparison and coupling of MAGIC and LWCC techniques for trace analysis of phosphate in seawater,\" Analytical Chemica Acta, v.611, 2008, p. 68.
Li, Q.P., Hansell, D.A., McGillicuddy, D.J., Bates, N.R., Johnson, R.J.. \"Tracer-based assessment of the origin and biogeochemical transformation of a cyclonic eddy in the Sargasso Sea,\" Journal of Geophysical Research, v.113, 2008, p. 10006.
Li, Q.P., Hansell, D.A., Zhang, J.-Z.. \"Underway monitoring of nanomolar nitrate plus nitrite and phosphate in oligotrophic seawater,\" Limnology and Oceanography: Methods, v.6, 2008, p. 319.
Li, Q.P., Zhang, J.-Z., Millero, F.J., Hansell, D.A.. \"Continuous colorimetric determination of trace ammonium in seawater with a long-path liquid waveguide capillary cell,\" Marine Chemistry, v.96, 2005, p. 73.
McGillicuddy, D.J., et. al.. \"Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms,\" Science, v.316, 2007, p. 1021.
McGillicuddy, D.J., Ledwell, J.R., and Anderson, L.A.. \"Response to Comment on \"Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom\".,\" Science, v.320, 2008.
McGillicuddy, D.J., Ledwell, J.R., Anderson, L.A.. \"Response to Comment on \"Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Bloom\",\" Science, v.320, 2008.
McGillicuddy, et. al.. \"Eddy/Wind Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms.,\" Science, v.316, 2007, p. 1021.
Mourino B., and McGillicuddy, D.J.. \"Mesoscale Variability in the Metabolic Balance of the Sargasso Sea,\" Limnology & Oceanography, v.51, 2006, p. 2675.";
    String projects_0_end_date "2005-09";
    String projects_0_geolocation "Sargasso Sea";
    String projects_0_name "Eddies Dynamics, Mixing, Export, and Species composition";
    String projects_0_project_nid "2048";
    String projects_0_project_website "http://science.whoi.edu/users/olga/eddies/EDDIES_Project.html";
    String projects_0_start_date "2004-06";
    String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
    String publisher_type "institution";
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 28.77809;
    String standard_name_vocabulary "CF Standard Name Table v55";
    String summary 
"Zooplankton biomass estimates were determined from 1 m^2, 150 micron mesh
MOCNESS (Multiple Opening/Closing Net and Environmental Sensing System) tows.
The following discrete depth intervals were sampled on the upcast: 0-50,
50-100, 100-150, 150-200, 200-300, 300-400, 400-500, 500-600, and 600-700 m.
Generally paired tows during the day (9:30-15:00 local time) and night
(21:30-03:00) were performed at each station. A single tow generaly covered
5-15 km.\\u00a0 The nominal position (lat_n and lon_n) for each tow is the
position at the mid depth 200-300m sampling interval.\\u00a0 Table 1 ([pg 1362
PDF](\\\\http://ocb.whoi.edu/EDDIES/PI-
NOTES/Goldthwait_Steinberg_2008_Table1.pdf\\\\)) of Goldthwait and Steinberg
(2008) is a sequential list of all MOCNESS mesozooplankton tows and includes
eddy identification number and location.
 
Each sample was size-fractionated using nested sieves of 0.15 mm, 0.5 mm, 1
mm, 2mm, and 5 mm mesh. Zooplankton in each size class were transferred onto
pre-weighed 0.15 mm nitex mesh filters and rinsed with deionized water.
Samples were then dried for 24 hours at 60 degrees C and weighed.
 
Data were prepared by Sarah Goldthwait of Humboldt State University
([https://fresca.calstate.edu/faculty/98](\\\\https://fresca.calstate.edu/faculty/98\\\\))
 
Publication: Goldthwait, S. and D.K. Steinberg. 2008. Elevated Biomass of
Mesozooplankton and Enhanced Fecal Pellet Flux in Cold-Core and Mode-Water
Eddies in the Sargasso Sea. Deep Sea Research Part II: Topical Studies in
Oceanography 55: pp. 1360-1377. DOI:
[https://dx.doi.org/10.1016/j.dsr2.2008.01.003](\\\\https://dx.doi.org/10.1016/j.dsr2.2008.01.003\\\\)";
    String title "Mesozooplankton biomass from MOCNESS tows collected during R/V Oceanus cruises OC415-01, OC415-03, OC404-01, OC404-04 in the Sargasso Sea, 2004-2005 (EDDIES project)";
    String version "1";
    Float64 Westernmost_Easting -69.367;
    String xml_source "osprey2erddap.update_xml() v1.3";
  }
}

 

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