Accessing BCO-DMO data
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| Dataset Title: | [rocky intertidal biomimic] - Environmental data collected from biomimetic and other data loggers located in rocky intertidal zones of global oceans between July 1999 and October 2013 (Environmental signal analysis: Monitoring the impacts of climate change on rocky intertidal ecosystem across a cascade of scales) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_555780) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Files
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Attributes {
s {
biomimic {
String bcodmo_name "unknown";
String description "Type of biomimic or logger.";
String ioos_category "Unknown";
String long_name "Biomimic";
String units "text";
}
country {
String bcodmo_name "site";
String description "Country name.";
String ioos_category "Location";
String long_name "Country";
String units "text";
}
state_province {
String bcodmo_name "site";
String description "State/province name.";
String ioos_category "Location";
String long_name "State Province";
String units "text";
}
site_id {
String bcodmo_name "Site_ID";
String description "6-character site identification code (where the first two characters indicate the country, the next two characters indicate the state/province, and the last two characters represent the site).";
String ioos_category "Identifier";
String long_name "Site Id";
String units "text";
}
site_name {
String bcodmo_name "site";
String description "Name of the site.";
String ioos_category "Unknown";
String long_name "Site Name";
String units "text";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 _FillValue NaN;
Float64 actual_range -43.3506, 53.24351667;
String axis "Y";
String bcodmo_name "latitude";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "Latitude of the site.";
String ioos_category "Location";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 _FillValue NaN;
Float64 actual_range -125.313889, 175.7486;
String axis "X";
String bcodmo_name "longitude";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "Longitude of the site.";
String ioos_category "Location";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String standard_name "longitude";
String units "degrees_east";
}
zone {
String bcodmo_name "site_descrip";
String description "Zone of the beach. Possible values: 0m, 1m, 2m, 5m, 10m, 14m, 20m, 30m, 40m, low, mid high.";
String ioos_category "Unknown";
String long_name "Zone";
String units "text";
}
sub_zone {
String bcodmo_name "site_descrip";
String description "Sub-zone of the beach. Possible values: backreef, lagoon, forereef, low, low mid, mid, high mid, high, terr.";
String ioos_category "Unknown";
String long_name "Sub Zone";
String units "text";
}
wave_exp {
String bcodmo_name "site_descrip";
String description "Wave exposure (exposed or protected).";
String ioos_category "Surface Waves";
String long_name "Wave Exp";
String units "text";
}
microsite_id {
String bcodmo_name "Site_ID";
String description
"Microsite identification number (where the first four characters indicate the type of logger, and the next six characters are the site_id). Logger type codes:
ABAP = Air Pressure (atm)
ABAT = Air Temperature (degrees C)
ABDP = Dew Point (degrees C)
ABGS = Gust Speed (mph)
ABPL = Water Pressure (atm)
ABRA = Precipitation (inches)
ABRH = Relative Humidity (%)
ABSR = Solar Radiation (W/m^2)
ABWD = Wind Direction (degrees)
ABWS = Wind Speed (mph)
ABWT = Water Temperature (degrees C)
BMRB = robobarnacle body temperature (degrees C)
BMRC = robocoral body temperature (degrees C)
BMRM = robomussel body temperature (degrees C)
BMRO = robooyster body temperature (degrees C)
BMRS = roboseastar body temperature (degrees C)
BMRT = robotidepool body temperature (degrees C)";
String ioos_category "Identifier";
String long_name "Microsite Id";
String units "text";
}
organism {
String bcodmo_name "taxon";
String description "Organism related to the biomimic, or the type of logger.";
String ioos_category "Unknown";
String long_name "Organism";
String units "unitless";
}
filedate {
String bcodmo_name "unknown";
String description "4-digit year and month name of the data file.";
String ioos_category "Unknown";
String long_name "Filedate";
String units "unitless";
}
data_description {
String bcodmo_name "brief_desc";
String description "Type of data (and units) reported from the biomimic or logger. (e.g. Air_Pressure_mbar, Air_Temp_C, DewPt_C, Gust_speed_m/s, Rain_mm, R_Humidity_%, Temp_C)";
String ioos_category "Unknown";
String long_name "Data Description";
String units "unitless";
}
date {
String bcodmo_name "date";
String description "Year, month, and day of when the value was recorded (GMT time) in YYYY-mm-dd format.";
String ioos_category "Time";
String long_name "Date";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/";
String units "unitless";
}
time2 {
String bcodmo_name "time";
String description "Time, in hours and minutes, when the value was recorded (GMT time) in HH:MM format.";
String ioos_category "Time";
String long_name "Time";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/AHMSAA01/";
String units "unitless";
}
value {
String bcodmo_name "unknown";
String description "Value of the data reported; data type and units is dependent on logger type. Refer to 'data_description' for type of data and units.";
String ioos_category "Unknown";
String long_name "Value";
String units "refer to data_description";
}
time {
String _CoordinateAxisType "Time";
Float64 actual_range 9.311148e+8, NaN;
String axis "T";
String bcodmo_name "ISO_DateTime_UTC";
String description "Date and time (UTC) formatted to the ISO 8601 standard in YYYY-mmddTHH:MM:SS.xxZ format.";
String ioos_category "Time";
String long_name "ISO Date Time UTC";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/";
String standard_name "time";
String time_origin "01-JAN-1970 00:00:00";
String units "seconds since 1970-01-01T00:00:00Z";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson,.odvTxt";
String acquisition_description
"Biomimetic loggers (instruments that closely mimic the thermal characteristics
of animals) that can be deployed in the field, have been deployed at multiple
sites along the west coast of North America. Data from these devices is
recorded at regular time intervals.";
String awards_0_award_nid "537379";
String awards_0_award_number "OCE-0926581";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=0926581";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "David L. Garrison";
String awards_0_program_manager_nid "50534";
String cdm_data_type "Other";
String comment
"Displayed by data_object_driven.active. Version: April 13, 2015/V1.02
Site Metadata: \"InfoMicrosite.xls\" file received on 23 March 2015.
Project PI: Brian Helmuth
Contact: Francis Choi
Version Date: 24 March 2015
Modified Date: 28 June 2016 (date field corrected)
Modified Date: 30 Sept 2016 (replaced 3 files with incorrect date format)
<a href=\"http://dmoserv3.bco-dmo.org/jg/serv/BCO-DMO/Monitoring_Rocky_Intertidal_Ecosystems/site_metadata.flat7?biomimic=Air_Pressure,country=USA,state_province=Massachusetts,site_id=USMAWS\" target=\"_blank\">Flat listing starting at level 4</a>.
<a href=\"http://dmoserv3.bco-dmo.org/jg/serv/BCO-DMO/Monitoring_Rocky_Intertidal_Ecosystems/site_metadata.flat7?biomimic=Air_Pressure,country=USA,state_province=Massachusetts,site_id=USMAWS,zone=nd\" target=\"_blank\">Flat listing starting at level 5</a>.
<a href=\"http://dmoserv3.bco-dmo.org/jg/serv/BCO-DMO/Monitoring_Rocky_Intertidal_Ecosystems/site_metadata.flat7?biomimic=Air_Pressure,country=USA,state_province=Massachusetts,site_id=USMAWS,zone=nd,sub_zone=nd\" target=\"_blank\">Flat listing starting at level 6</a>.
<a href=\"http://dmoserv3.bco-dmo.org/jg/serv/BCO-DMO/Monitoring_Rocky_Intertidal_Ecosystems/site_metadata.flat7?biomimic=Air_Pressure,country=USA,state_province=Massachusetts,site_id=USMAWS,zone=nd,sub_zone=nd,wave_exp=nd\" target=\"_blank\">Flat listing starting at level 7</a>.
<a href=\"http://dmoserv3.bco-dmo.org/jg/serv/BCO-DMO/Monitoring_Rocky_Intertidal_Ecosystems/site_metadata.flat7?biomimic=Air_Pressure,country=USA,state_province=Massachusetts,site_id=USMAWS,zone=nd,sub_zone=nd,wave_exp=nd,microsite_id=ABAPUSMAWS1\" target=\"_blank\">Flat listing starting at level 8</a>.
Program get_file_data.active, Version: June 29, 2016/V1.01
Time_GMT\tAir_Pressure_mbar";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2015-04-13T18:42:29Z";
String date_modified "2016-10-17T19:10:31Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.649882";
Float64 Easternmost_Easting 175.7486;
Float64 geospatial_lat_max 53.24351667;
Float64 geospatial_lat_min -43.3506;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max 175.7486;
Float64 geospatial_lon_min -125.313889;
String geospatial_lon_units "degrees_east";
String history
"2024-11-21T11:41:06Z (local files)
2024-11-21T11:41:06Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_555780.html";
String infoUrl "https://www.bco-dmo.org/dataset/555780";
String institution "BCO-DMO";
String keywords "bco, bco-dmo, biological, biomimic, chemical, country, data, data_description, dataset, date, description, dmo, erddap, exp, filedate, identifier, iso, ISO_DateTime_UTC, latitude, longitude, management, microsite, microsite_id, name, oceanography, office, organism, preliminary, province, site, site_id, site_name, state, state_province, sub, sub_zone, surface, surface waves, time, time2, value, wave, wave_exp, waves, zone";
String license "https://www.bco-dmo.org/dataset/555780/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/555780";
Float64 Northernmost_Northing 53.24351667;
String param_mapping "{'555780': {'latitude': 'flag - latitude', 'longitude': 'flag - longitude', 'ISO_DateTime_UTC': 'master - time'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/555780/parameters";
String people_0_affiliation "Northeastern University";
String people_0_affiliation_acronym "NEU";
String people_0_person_name "Dr Brian Helmuth";
String people_0_person_nid "537382";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "Northeastern University";
String people_1_affiliation_acronym "NEU";
String people_1_person_name "Francis Choi";
String people_1_person_nid "537386";
String people_1_role "Contact";
String people_1_role_type "related";
String people_2_affiliation "Woods Hole Oceanographic Institution";
String people_2_affiliation_acronym "WHOI BCO-DMO";
String people_2_person_name "Robert C. Groman";
String people_2_person_nid "50380";
String people_2_role "BCO-DMO Data Manager";
String people_2_role_type "related";
String people_3_affiliation "Woods Hole Oceanographic Institution";
String people_3_affiliation_acronym "WHOI BCO-DMO";
String people_3_person_name "Shannon Rauch";
String people_3_person_nid "51498";
String people_3_role "BCO-DMO Data Manager";
String people_3_role_type "related";
String project "Environmental signal analysis: Monitoring the impacts of climate change on rocky intertidal ecosystem across a cascade of scales";
String projects_0_acronym "Monitoring Rocky Intertidal Ecosystems";
String projects_0_description
"Project description from NSF award abstract:
The rocky intertidal zone is a model ecosystem for evaluating the impacts of weather, climate, and climate change on natural ecosystems, as animals and plants living in this habitat frequently live very close to their thermal tolerance limits. Moreover, two organisms exposed to identical physical environments can experience radically different conditions at the level of the niche. Environmental signals measured at large spatial and temporal scales must be translated to the level of an organism's niche to hindcast, nowcast, and forecast the effects of climate and weather on the survival, reproduction and ecological interactions of organisms. The investigator has developed models and sensors for several species of intertidal organisms, specifically the mussel Mytilus californianus and the predatory seastar Pisaster ochraceus. Data relevant to mussels has been collected nearly continuously at a series of 9 sites along the west coast of North America since 1999, and these data show that patterns of physiological stress are likely to be far more complex than those predicted based on measurements at the habitat level (i.e. by buoy or satellite). Increases in body temperature have been observed over the last 5 years that are not reflected by onshore or offshore water or air temperature measurements, but instead are the result of complex interactions between multiple environmental parameters. Moreover, preliminary results suggest that predator and prey may experience markedly different patterns of temperature in space and in time. This result has significant implications for where and when we look for evidence of the impacts of climate change. The investigator will continue monitoring intertidal temperatures, currently the only long-terms series of its kind, and will expand the study to include the predatory seastar Pisaster through the use of thermally-matched sensors. He will use these data to test a series of hypotheses relating to patterns of risk of high and low temperature extremes. Data will also serve as an important source of information for physiological, ecological and biogeographic studies conducted by labs throughout the US. The investigator will produce a searchable, publicly-accessible database where individual temperature records can be downloaded by researchers and applied to physiological and ecological studies.";
String projects_0_end_date "2014-08";
String projects_0_geolocation "Global";
String projects_0_name "Environmental signal analysis: Monitoring the impacts of climate change on rocky intertidal ecosystem across a cascade of scales";
String projects_0_project_nid "537380";
String projects_0_project_website "http://www.northeastern.edu/helmuthlab/database/";
String projects_0_start_date "2009-09";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
Float64 Southernmost_Northing -43.3506;
String standard_name_vocabulary "CF Standard Name Table v55";
String summary
"Environmental data (water temp, air temp, etc.) from biomimic devices and
other loggers located in the rocky intertidal zone.";
String time_coverage_start "1999-07-04T19:00:00Z";
String title "[rocky intertidal biomimic] - Environmental data collected from biomimetic and other data loggers located in rocky intertidal zones of global oceans between July 1999 and October 2013 (Environmental signal analysis: Monitoring the impacts of climate change on rocky intertidal ecosystem across a cascade of scales)";
String version "1";
Float64 Westernmost_Easting -125.313889;
String xml_source "osprey2erddap.update_xml() v1.0";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.