Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [MUSiCC OC1504A - Event Log] - Event log from the R/V Oceanus OC1504A, a cruise along the Oregon/California Coastal Upwelling Zone, between 34-44N and 120-124W during 2015 (Linking physiological and molecular aspects of diatom silicification in field populations) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_651685) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Subset
| Files
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Attributes {
s {
cruise {
String bcodmo_name "Cruise Name";
String description "Cruise name associated with OC1504A.";
String long_name "Cruise";
String units "unitless";
}
event {
String bcodmo_name "event";
String description "ID number for the event.";
String long_name "Event";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/EVTAGFL/";
String units "unitless";
}
activity {
String bcodmo_name "activity_and_comments";
String description "Activity performed with the instrument.";
String long_name "Activity";
String units "unitless";
}
date_local {
String bcodmo_name "date_local";
String description "Local date that the event took place; format dd-bbb-yy.";
String long_name "Date Local";
String units "unitless";
}
time_local {
String bcodmo_name "time_local";
String description "Local time that the event took place; format HH:MM.";
String long_name "Time Local";
String units "unitless";
}
time_utc {
String bcodmo_name "time_utc";
String description "Time (UTC) that the event took place; format HH:MM.";
String long_name "Time Utc";
String units "unitless";
}
date_utc {
String bcodmo_name "date";
String description "Date (UTC) that the event took place; format dd-bbb-yy.";
String long_name "Date Utc";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/";
String units "unitless";
}
station {
String bcodmo_name "sta_id";
String description "Alpha-numeric code representing the sampling station.";
String long_name "Station";
String units "unitless";
}
depth_w {
Int16 _FillValue 32767;
Int16 actual_range 55, 1850;
String bcodmo_name "depth_w";
Float64 colorBarMaximum 8000.0;
Float64 colorBarMinimum -8000.0;
String colorBarPalette "TopographyDepth";
String description "Bottom depth";
String long_name "Depth";
String standard_name "depth";
String units "meters";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 _FillValue NaN;
Float64 actual_range 34.551, 44.62575;
String axis "Y";
String bcodmo_name "latitude";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "Latitude in decimal degrees.";
String ioos_category "Location";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 _FillValue NaN;
Float64 actual_range -124.48169, -120.81017;
String axis "X";
String bcodmo_name "longitude";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "Longitude in decimal degrees.";
String ioos_category "Location";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String standard_name "longitude";
String units "degrees_east";
}
samples_collected {
String bcodmo_name "sample_type";
String description "Types of samples collected.";
String long_name "Samples Collected";
String units "unitless";
}
comments {
String bcodmo_name "comment";
String description "Free text comments about the sampling event and post-cruise corrections.";
String long_name "Comments";
String units "unitless";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson";
String acquisition_description
"The log includes a record of all scientific sampling events from the cruise.
In addition to event identification numbers unique for the cruise, the
scientific sampling event log includes date and time (UTC), position (latitude
and longitude), station and samples collected, activity (CTD
cast),\\u00a0bottom depth, and a comment field to record additional
information.\\u00a0";
String awards_0_award_nid "558197";
String awards_0_award_number "OCE-1333929";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1333929";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "David L. Garrison";
String awards_0_program_manager_nid "50534";
String awards_1_award_nid "558203";
String awards_1_award_number "OCE-1334387";
String awards_1_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1334387";
String awards_1_funder_name "NSF Division of Ocean Sciences";
String awards_1_funding_acronym "NSF OCE";
String awards_1_funding_source_nid "355";
String awards_1_program_manager "David L. Garrison";
String awards_1_program_manager_nid "50534";
String cdm_data_type "Other";
String comment
"Event Log from OC1504A (MUSiCC)
K. Thamatrakoln and M. Brzezinski, PIs
Version 13 July 2016";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2016-07-13T14:34:30Z";
String date_modified "2019-06-06T16:17:10Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.651685.1";
Float64 Easternmost_Easting -120.81017;
Float64 geospatial_lat_max 44.62575;
Float64 geospatial_lat_min 34.551;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -120.81017;
Float64 geospatial_lon_min -124.48169;
String geospatial_lon_units "degrees_east";
String history
"2024-12-30T17:13:25Z (local files)
2024-12-30T17:13:25Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_651685.html";
String infoUrl "https://www.bco-dmo.org/dataset/651685";
String institution "BCO-DMO";
String keywords "activity, bco, bco-dmo, biological, chemical, collected, comments, cruise, data, dataset, date, date_local, date_utc, depth, depth_w, dmo, erddap, event, latitude, local, longitude, management, oceanography, office, preliminary, samples, samples_collected, station, time, time_local, time_utc";
String license "https://www.bco-dmo.org/dataset/651685/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/651685";
Float64 Northernmost_Northing 44.62575;
String param_mapping "{'651685': {'lat': 'master - latitude', 'lon': 'master - longitude'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/651685/parameters";
String people_0_affiliation "Rutgers University";
String people_0_affiliation_acronym "Rutgers IMCS";
String people_0_person_name "Kimberlee Thamatrakoln";
String people_0_person_nid "558200";
String people_0_role "Chief Scientist";
String people_0_role_type "originator";
String people_1_affiliation "University of California-Santa Barbara";
String people_1_affiliation_acronym "UCSB-LifeSci";
String people_1_person_name "Mark A. Brzezinski";
String people_1_person_nid "50663";
String people_1_role "Co-Chief Scientist";
String people_1_role_type "originator";
String people_2_affiliation "Rutgers University";
String people_2_affiliation_acronym "Rutgers IMCS";
String people_2_person_name "Kimberlee Thamatrakoln";
String people_2_person_nid "558200";
String people_2_role "Contact";
String people_2_role_type "related";
String people_3_affiliation "Woods Hole Oceanographic Institution";
String people_3_affiliation_acronym "WHOI BCO-DMO";
String people_3_person_name "Hannah Ake";
String people_3_person_nid "650173";
String people_3_role "BCO-DMO Data Manager";
String people_3_role_type "related";
String project "Diatom Silicification";
String projects_0_acronym "Diatom Silicification";
String projects_0_description
"Description from NSF award abstract:
Diatoms, unicellular, eukaryotic photoautotrophs, are among the most ecologically successful and functionally diverse organisms in the ocean. In addition to contributing one-fifth of total global primary productivity, diatoms are also the largest group of silicifying organisms in the ocean. Thus, diatoms form a critical link between the carbon and silicon (Si) cycles. The goal of this project is to understand the molecular regulation of silicification processes in natural diatom populations to better understand the processes controlling diatom productivity in the sea. Through culture studies and two research cruises, this research will couple classical measurements of silicon uptake and silica production with molecular and biochemical analyses of Silicification-Related Gene (SiRG) and protein expression. The proposed cruise track off the West Coast of the US will target gradients in Si and iron (Fe) concentrations with the following goals: 1) Characterize the expression pattern of SiRGs, 2) Correlate SiRG expression patterns to Si concentrations, silicon uptake kinetics, and silica production rates, 3) Develop a method to normalize uptake kinetics and silica production to SiRG expression levels as a more accurate measure of diatom activity and growth, 4) Characterize the diel periodicity of silica production and SiRG expression.
It is estimated that diatoms process 240 Teramoles of biogenic silica each year and that each molecule of silicon is cycled through a diatom 39 times before being exported to the deep ocean. Decades of oceanographic and field research have provided detailed insight into the dynamics of silicon uptake and silica production in natural populations, but a molecular understanding of the factors that influence silicification processes is required for further understanding the regulation of silicon and carbon fluxes in the ocean. Characterizing the genetic potential for silicification will provide new information on the factors that regulate the distribution of diatoms and influence in situ rates of silicon uptake and silica production. This research is expected to provide significant information about the molecular regulation of silicification in natural populations and the physiological basis of Si limitation in the sea.";
String projects_0_end_date "2016-08";
String projects_0_geolocation "Oregon/California Coastal Upwelling Zone, between 34-44N and 120-124W";
String projects_0_name "Linking physiological and molecular aspects of diatom silicification in field populations";
String projects_0_project_nid "558198";
String projects_0_start_date "2013-09";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
Float64 Southernmost_Northing 34.551;
String standard_name_vocabulary "CF Standard Name Table v55";
String subsetVariables "cruise";
String summary "Event log from the R/V Oceanus OC1504A, a cruise along the Oregon/California Coastal Upwelling Zone, between 34-44N and 120-124W during 2015";
String title "[MUSiCC OC1504A - Event Log] - Event log from the R/V Oceanus OC1504A, a cruise along the Oregon/California Coastal Upwelling Zone, between 34-44N and 120-124W during 2015 (Linking physiological and molecular aspects of diatom silicification in field populations)";
String version "1";
Float64 Westernmost_Easting -124.48169;
String xml_source "osprey2erddap.update_xml() v1.3";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.