Data Access Form

Dataset Title:	[Species key] - Species key for individuals surveyed in studies conducted by M. Hixon, C. Benkwitt, and T. Kindinger in the Bahamas (Eleuthera), Bonaire, and the Cayman Islands between 2009 and 2015 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)
Institution:	BCO-DMO (Dataset ID: bcodmo_dataset_655195)
Information:	Summary \| License \| ISO 19115 \| Metadata \| Background \| Files

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Variable	Minimum	Maximum
SPECIES_CODE (unitless)	"ABSA"	"XYSP"
SCIENTIFIC_NAME (unitless)	"Abudefduf saxatilis"	"n/a"
COMMON_NAME (unitless)	"Arrow Blenny"	"Yellowtail snapper"

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  SPECIES_CODE {
    String bcodmo_name "species";
    String description "species code; first two letters of the genus and species";
    String long_name "SPECIES CODE";
    String units "unitless";
  }
  SCIENTIFIC_NAME {
    String bcodmo_name "taxon";
    String description "scientific name of the species surveyed.  The family or Genus sp. is provided in some instances where species name is not known.";
    String long_name "SCIENTIFIC NAME";
    String units "unitless";
  }
  COMMON_NAME {
    String bcodmo_name "common_name";
    String description "common name of the species surveyed";
    String long_name "COMMON NAME";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv";
    String acquisition_description "Species observed during M. Hixon, C. Benkwitt, and T. Kindinger reef surveys.";
    String awards_0_award_nid "561016";
    String awards_0_award_number "OCE-1233027";
    String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1233027";
    String awards_0_funder_name "NSF Division of Ocean Sciences";
    String awards_0_funding_acronym "NSF OCE";
    String awards_0_funding_source_nid "355";
    String awards_0_program_manager "David L. Garrison";
    String awards_0_program_manager_nid "50534";
    String cdm_data_type "Other";
    String comment 
"Species key for project:  
     Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish 
  PI: Mark Hixon 
   data version: 2018-06-07";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_type "institution";
    String creator_url "https://www.bco-dmo.org/";
    String data_source "extract_data_as_tsv version 2.3  19 Dec 2019";
    String date_created "2016-08-22T15:06:01Z";
    String date_modified "2019-05-14T17:19:03Z";
    String defaultDataQuery "&amp;time&lt;now";
    String doi "10.1575/1912/bco-dmo.655195.2";
    String history 
"2024-11-21T12:00:02Z (local files)
2024-11-21T12:00:02Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_655195.html";
    String infoUrl "https://www.bco-dmo.org/dataset/655195";
    String institution "BCO-DMO";
    String keywords "bco, bco-dmo, biological, chemical, code, common, COMMON_NAME, data, dataset, dmo, erddap, management, name, oceanography, office, preliminary, scientific, SCIENTIFIC_NAME, species, SPECIES_CODE";
    String license "https://www.bco-dmo.org/dataset/655195/license";
    String metadata_source "https://www.bco-dmo.org/api/dataset/655195";
    String param_mapping "{'655195': {}}";
    String parameter_source "https://www.bco-dmo.org/mapserver/dataset/655195/parameters";
    String people_0_affiliation "University of Hawaii";
    String people_0_person_name "Mark Hixon";
    String people_0_person_nid "51647";
    String people_0_role "Principal Investigator";
    String people_0_role_type "originator";
    String people_1_affiliation "Oregon State University";
    String people_1_affiliation_acronym "OSU";
    String people_1_person_name "Cassandra E. Benkwitt";
    String people_1_person_nid "51706";
    String people_1_role "Contact";
    String people_1_role_type "related";
    String people_2_affiliation "Oregon State University";
    String people_2_affiliation_acronym "OSU";
    String people_2_person_name "Tye L. Kindinger";
    String people_2_person_nid "51707";
    String people_2_role "Contact";
    String people_2_role_type "related";
    String people_3_affiliation "Woods Hole Oceanographic Institution";
    String people_3_affiliation_acronym "WHOI BCO-DMO";
    String people_3_person_name "Hannah Ake";
    String people_3_person_nid "650173";
    String people_3_role "BCO-DMO Data Manager";
    String people_3_role_type "related";
    String people_4_affiliation "Woods Hole Oceanographic Institution";
    String people_4_affiliation_acronym "WHOI BCO-DMO";
    String people_4_person_name "Amber York";
    String people_4_person_nid "643627";
    String people_4_role "BCO-DMO Data Manager";
    String people_4_role_type "related";
    String project "BiodiversityLossEffects_lionfish";
    String projects_0_acronym "BiodiversityLossEffects_lionfish";
    String projects_0_description 
"The Pacific red lionfish (Pterois volitans), a popular aquarium fish, was introduced to the Atlantic Ocean in the vicinity of Florida in the late 20th century. Voraciously consuming small native coral-reef fishes, including the juveniles of fisheries and ecologically important species, the invader has undergone a population explosion that now ranges from the U.S. southeastern seaboard to the Gulf of Mexico and across the greater Caribbean region. The PI's past research determined that invasive lionfish (1) have escaped their natural enemies in the Pacific (lionfish are much less abundant in their native range); (2) are not yet controlled by Atlantic predators, competitors, or parasites; (3) have strong negative effects on populations of native Atlantic fishes; and (4) locally reduce the diversity (number of species) of native fishes. The lionfish invasion has been recognized as one of the major conservation threats worldwide.
The Bahamas support the highest abundances of invasive lionfish globally. This system thus provides an unprecedented opportunity to understand the direct and indirect effects of a major invader on a diverse community, as well as the underlying causative mechanisms. The PI will focus on five related questions: (1) How does long-term predation by lionfish alter the structure of native reef-fish communities? (2) How does lionfish predation destabilize native prey population dynamics, possibly causing local extinctions? (3) Is there a lionfish-herbivore-seaweed trophic cascade on invaded reefs? (4) How do lionfish modify cleaning mutualisms on invaded reefs? (5) Are lionfish reaching densities where natural population limits are evident?";
    String projects_0_end_date "2016-07";
    String projects_0_geolocation "Three Bahamian sites: 24.8318, -076.3299;  23.8562, -076.2250; 23.7727, -076.1071; Caribbean Netherlands: 12.1599, -068.2820";
    String projects_0_name "Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish";
    String projects_0_project_nid "561017";
    String projects_0_project_website "http://hixon.science.oregonstate.edu/content/highlight-lionfish-invasion";
    String projects_0_start_date "2012-08";
    String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
    String publisher_type "institution";
    String sourceUrl "(local files)";
    String standard_name_vocabulary "CF Standard Name Table v55";
    String summary "This is a key of all species sampled in the project \\Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish.\\\\r\\n\\r\\nSpecies codes in each related dataset are represented as the first two letters of the genus and species. This key includes the scientific and common names for each of those codes.";
    String title "[Species key] - Species key for individuals surveyed in studies conducted by M. Hixon, C. Benkwitt, and T. Kindinger in the Bahamas (Eleuthera), Bonaire, and the Cayman Islands between 2009 and 2015 (Mechanisms and Consequences of Fish Biodiversity Loss on Atlantic Coral Reefs Caused by Invasive Pacific Lionfish)";
    String version "2";
    String xml_source "osprey2erddap.update_xml() v1.3";
  }
}

Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link)

Data Access Protocol (DAP) (external link)

and its selection constraints (external link)

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

(easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
(easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
(not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.